Wall clock time and date at job start Tue Mar 31 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00484 * 2 1 4 4 H 1.48504 * 109.47243 * 240.00130 * 3 2 1 5 5 H 1.48500 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47234 * 120.00148 * 3 2 1 7 7 C 1.37887 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99885 * 0.27938 * 7 2 1 10 10 H 1.08994 * 109.50082 * 59.72534 * 9 7 2 11 11 C 1.53045 * 109.49509 * 179.78861 * 9 7 2 12 12 C 1.53037 * 109.53942 * 181.31318 * 11 9 7 13 13 C 1.53189 * 109.31227 * 298.63672 * 12 11 9 14 14 N 1.46931 * 108.77818 * 54.63091 * 13 12 11 15 15 C 1.34773 * 120.62888 * 126.43285 * 14 13 12 16 16 O 1.21613 * 119.99753 * 175.79433 * 15 14 13 17 17 C 1.47388 * 120.00305 * 355.79772 * 15 14 13 18 18 C 1.39975 * 120.61418 * 54.43340 * 17 15 14 19 19 C 1.38331 * 118.37438 * 180.02562 * 18 17 15 20 20 C 1.38405 * 119.52235 * 0.02562 * 19 18 17 21 21 N 1.31821 * 121.22884 * 0.02562 * 20 19 18 22 22 C 1.32503 * 121.76569 * 359.65178 * 21 20 19 23 23 S 1.76206 * 119.83385 * 180.31708 * 22 21 20 24 24 C 1.46936 * 118.76370 * 306.41377 * 14 13 12 25 25 H 0.97001 * 119.99273 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.45857 * 301.33511 * 11 9 7 27 27 H 1.09002 * 109.45664 * 61.29164 * 11 9 7 28 28 H 1.09006 * 109.49456 * 58.58648 * 12 11 9 29 29 H 1.08997 * 109.49858 * 178.64776 * 12 11 9 30 30 H 1.08997 * 109.58992 * 174.42034 * 13 12 11 31 31 H 1.08997 * 109.58524 * 294.84607 * 13 12 11 32 32 H 1.07999 * 120.80815 * 359.97438 * 18 17 15 33 33 H 1.07994 * 120.23489 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.38275 * 179.97438 * 20 19 18 35 35 H 1.40999 * 99.99696 * 270.31807 * 23 22 21 36 36 H 1.08994 * 109.56284 * 293.78556 * 24 14 13 37 37 H 1.09001 * 109.60847 * 173.35507 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 -0.0052 10 1 0.6241 -2.5535 -0.8953 11 6 2.2448 -3.6630 -0.0087 12 6 1.4808 -4.9884 -0.0476 13 6 0.6043 -5.1049 1.2033 14 7 -0.2543 -3.9158 1.2916 15 6 -1.5907 -4.0413 1.4127 16 8 -2.2832 -3.0528 1.5617 17 6 -2.2129 -5.3766 1.3646 18 6 -1.7868 -6.3931 2.2274 19 6 -2.4026 -7.6288 2.1422 20 6 -3.4121 -7.8253 1.2160 21 7 -3.7992 -6.8559 0.4109 22 6 -3.2483 -5.6516 0.4540 23 16 -3.8110 -4.3906 -0.6405 24 6 0.3712 -2.5871 1.2458 25 1 -0.4849 0.8401 0.0004 26 1 2.8880 -3.5886 -0.8856 27 1 2.8551 -3.6219 0.8935 28 1 0.8514 -5.0196 -0.9371 29 1 2.1895 -5.8162 -0.0743 30 1 -0.0155 -5.9988 1.1333 31 1 1.2372 -5.1651 2.0886 32 1 -0.9960 -6.2170 2.9416 33 1 -2.0972 -8.4346 2.7931 34 1 -3.8910 -8.7912 1.1511 35 1 -2.9533 -4.6171 -1.7365 36 1 0.9848 -2.4417 2.1349 37 1 -0.4020 -1.8200 1.2035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855260215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:25 Heat of formation + Delta-G solvation = -10.325776 kcal Electronic energy + Delta-G solvation = -21495.414015 eV Core-core repulsion = 18363.304161 eV Total energy + Delta-G solvation = -3132.109854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77957 -40.24673 -38.30672 -35.42509 -34.03890 -33.23334 -32.51267 -31.46110 -27.28235 -26.75084 -24.95772 -24.77458 -23.45879 -21.73098 -20.26206 -19.33692 -18.71741 -18.02421 -17.80151 -17.08379 -16.97128 -16.54844 -15.81180 -15.57021 -15.29509 -15.05613 -14.74816 -14.56055 -14.37711 -14.28809 -13.76737 -13.53734 -13.37765 -12.85410 -12.74665 -12.33795 -12.30264 -12.26781 -11.93128 -11.68107 -11.22685 -11.04419 -10.99596 -10.82318 -10.57523 -10.48672 -10.18358 -9.48748 -9.14774 -8.10242 -6.27869 -0.57006 -0.05450 0.38741 1.40049 1.41447 1.42422 1.51110 1.65373 2.11557 2.42488 2.59375 3.17304 3.30254 3.57701 3.73005 3.86849 3.98644 4.09486 4.13958 4.28630 4.41529 4.56122 4.69080 4.74878 4.82173 4.84738 4.95814 5.05456 5.20724 5.22516 5.33474 5.44859 5.53423 5.60756 5.88303 5.99225 6.31966 6.55203 6.62247 6.84542 7.23640 7.42673 8.92816 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.005027 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.329196 B = 5568.234391 C = 6235.332989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.019 1.019 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.097 3.903 14 N -0.602 5.602 15 C 0.543 3.457 16 O -0.555 6.555 17 C -0.136 4.136 18 C -0.055 4.055 19 C -0.120 4.120 20 C 0.107 3.893 21 N -0.469 5.469 22 C 0.126 3.874 23 S -0.134 6.134 24 C 0.128 3.872 25 H 0.260 0.740 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.173 0.827 33 H 0.202 0.798 34 H 0.209 0.791 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -20.891 5.427 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.020 3.980 10 H -0.001 1.001 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.024 4.024 14 N -0.334 5.334 15 C 0.329 3.671 16 O -0.433 6.433 17 C -0.145 4.145 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.055 4.055 21 N -0.180 5.180 22 C -0.122 4.122 23 S 0.023 5.977 24 C 0.006 3.994 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.219 0.781 34 H 0.225 0.775 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.150 -19.628 4.454 20.241 hybrid contribution 1.539 1.003 -0.002 1.837 sum -0.611 -18.625 4.453 19.160 Atomic orbital electron populations 1.70081 1.07400 1.27367 1.50309 1.25883 0.95511 1.02859 0.94558 0.85642 0.78280 0.78855 0.79088 1.19477 1.21607 1.19004 1.21465 0.93278 0.91383 1.51465 0.91890 1.18891 0.93042 0.93894 0.92168 1.00094 1.21518 0.97645 0.93906 1.01179 1.21916 0.98946 0.98603 0.97047 1.22214 0.93571 0.87054 0.99587 1.48447 1.05323 1.09125 1.70463 1.18422 0.82499 0.88614 0.77532 1.90826 1.62616 1.40159 1.49705 1.21225 0.97828 0.95278 1.00203 1.22218 0.98664 0.91480 0.95836 1.22794 0.94826 0.97784 0.98516 1.23931 0.93693 0.98375 0.89472 1.68248 1.25937 0.99246 1.24530 1.22242 0.95634 0.95399 0.98913 1.87513 1.52155 1.39832 1.18207 1.21747 0.97191 0.82311 0.98113 0.93106 0.93145 0.91785 0.94260 0.87548 0.88147 0.88658 0.80998 0.78072 0.77480 0.92805 0.93833 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 11.40 21.45 0.24 -55.59 16 2 C 0.01 0.66 5.31 84.66 0.45 1.11 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -29.40 8.56 25.60 0.22 -29.18 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 10 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 11 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 12 C -0.13 -3.66 6.08 30.67 0.19 -3.48 16 13 C 0.10 2.61 5.58 86.36 0.48 3.10 16 14 N -0.60 -23.63 2.97 -822.81 -2.45 -26.07 16 15 C 0.54 22.41 6.57 86.65 0.57 22.98 16 16 O -0.55 -28.82 15.49 -4.07 -0.06 -28.88 16 17 C -0.14 -4.23 4.90 -19.87 -0.10 -4.33 16 18 C -0.05 -1.03 7.57 22.71 0.17 -0.86 16 19 C -0.12 -1.35 10.09 22.33 0.23 -1.12 16 20 C 0.11 1.64 11.16 84.73 0.95 2.58 16 21 N -0.47 -12.44 10.33 -190.86 -1.97 -14.41 16 22 C 0.13 4.13 7.08 85.17 0.60 4.73 16 23 S -0.13 -5.09 24.26 -56.49 -1.37 -6.46 16 24 C 0.13 6.31 5.39 86.36 0.47 6.77 16 25 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.10 2.11 4.74 -2.39 -0.01 2.10 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.17 2.36 7.44 -2.91 -0.02 2.34 16 33 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 34 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.11 3.84 9.55 73.80 0.70 4.54 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 4.64 5.16 -2.39 -0.01 4.62 16 Total: -1.00 -79.02 317.01 2.58 -76.44 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.80 Total: 8.23 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.35 Total: 0.47 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -4.17 Total: -96.07 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.88 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.37 Total: -6.46 kcal Total: -79.02 2.58 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.114 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds