Wall clock time and date at job start Tue Mar 31 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38110 * 119.61201 * 2 1 4 4 C 1.38715 * 119.22950 * 180.09780 * 3 2 1 5 5 C 1.38634 * 118.63136 * 359.97438 * 4 3 2 6 6 C 1.38691 * 119.06908 * 359.83229 * 5 4 3 7 7 N 1.31800 * 119.60311 * 179.97438 * 2 1 3 8 8 N 1.39764 * 120.58326 * 180.31782 * 6 5 4 9 9 C 1.34775 * 120.52424 * 166.12734 * 8 6 5 10 10 O 1.21270 * 120.00388 * 180.02562 * 9 8 6 11 11 C 1.50703 * 119.99754 * 0.02562 * 9 8 6 12 12 S 1.80999 * 109.47308 * 180.02562 * 11 9 8 13 13 C 1.76192 * 100.00216 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00048 * 0.02562 * 13 12 11 15 15 C 1.38802 * 120.00190 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00286 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 60.00040 * 17 15 13 19 19 H 1.48491 * 109.47356 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47223 * 300.00813 * 17 15 13 21 21 C 1.46888 * 118.95757 * 346.14295 * 8 6 5 22 22 C 1.53433 * 107.91390 * 44.95499 * 21 8 6 23 23 C 1.50458 * 119.13911 * 179.57577 * 5 4 3 24 24 H 1.08999 * 109.47654 * 270.02752 * 1 2 3 25 25 H 1.09007 * 109.46687 * 30.03162 * 1 2 3 26 26 H 1.09009 * 109.47074 * 150.02081 * 1 2 3 27 27 H 1.08003 * 120.38601 * 0.11940 * 3 2 1 28 28 H 1.07991 * 120.68504 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46829 * 300.00177 * 11 9 8 30 30 H 1.09003 * 109.47136 * 60.00179 * 11 9 8 31 31 H 0.97000 * 119.99584 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.78089 * 164.57551 * 21 8 6 33 33 H 1.09002 * 109.78206 * 285.33390 * 21 8 6 34 34 H 1.08995 * 109.58330 * 56.66442 * 22 21 8 35 35 H 1.08997 * 109.57976 * 177.07326 * 22 21 8 36 36 H 1.08999 * 109.30280 * 280.10587 * 23 5 4 37 37 H 1.09002 * 109.30571 * 39.50355 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.2007 0.0000 4 6 3.5766 1.1915 -0.0021 5 6 4.2327 -0.0298 -0.0035 6 6 3.4838 -1.1971 0.0007 7 7 2.1581 -1.1460 0.0005 8 7 4.1126 -2.4453 0.0060 9 6 3.4138 -3.5626 0.2884 10 8 3.9689 -4.6407 0.2909 11 6 1.9423 -3.4721 0.6012 12 16 1.2935 -5.1284 0.9355 13 6 -0.3930 -4.7363 1.2614 14 1 -0.7275 -3.7104 1.2159 15 6 -1.2921 -5.7461 1.5755 16 7 -0.8846 -6.9966 1.6305 17 14 -3.0801 -5.3304 1.9217 18 1 -3.6764 -4.6775 0.7287 19 1 -3.8271 -6.5761 2.2301 20 1 -3.1579 -4.4069 3.0820 21 6 5.5472 -2.5203 -0.3006 22 6 6.2552 -1.4040 0.4782 23 6 5.7371 -0.0532 -0.0155 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5144 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6494 2.1360 0.0019 28 1 4.1339 2.1165 -0.0025 29 1 1.7954 -2.8409 1.4776 30 1 1.4158 -3.0403 -0.2500 31 1 -1.5128 -7.7021 1.8504 32 1 5.9396 -3.4900 0.0057 33 1 5.7036 -2.3804 -1.3703 34 1 6.0424 -1.5090 1.5420 35 1 7.3304 -1.4671 0.3107 36 1 6.0920 0.1186 -1.0317 37 1 6.1150 0.7369 0.6334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876491012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:49 Heat of formation + Delta-G solvation = 10.051769 kcal Electronic energy + Delta-G solvation = -21045.708049 eV Core-core repulsion = 17914.481831 eV Total energy + Delta-G solvation = -3131.226218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25406 -39.02548 -36.78501 -34.45427 -32.33166 -32.25460 -31.12053 -29.26704 -27.99991 -25.48510 -24.90024 -24.06838 -22.58057 -20.82034 -19.72718 -17.86905 -16.95305 -16.60043 -16.08061 -15.62092 -15.42046 -14.71837 -14.47411 -14.38114 -14.09596 -13.77274 -13.50270 -13.36715 -13.29900 -12.82478 -12.63397 -12.42885 -12.10595 -11.83586 -11.58721 -11.29130 -11.12059 -10.97169 -10.94853 -10.71323 -10.32322 -9.85858 -9.53433 -9.47348 -9.18891 -8.95365 -8.04975 -7.96067 -6.38013 -6.11566 -3.80515 1.02284 1.20956 2.61759 2.96192 3.28711 3.28881 3.33864 3.66778 3.75798 4.20293 4.31053 4.47951 4.54340 4.64380 4.73890 4.81123 5.00839 5.12314 5.23336 5.32451 5.38342 5.43187 5.48363 5.57586 5.62512 5.65851 5.70812 5.83710 5.89250 5.91396 6.10199 6.12250 6.25237 6.35260 6.60598 6.69750 7.39317 7.70290 7.93678 8.41707 8.46866 9.33455 10.96185 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005192 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.623384 B = 5392.115449 C = 6783.618931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.166 3.834 3 C -0.206 4.206 4 C -0.045 4.045 5 C -0.177 4.177 6 C 0.380 3.620 7 N -0.503 5.503 8 N -0.552 5.552 9 C 0.540 3.460 10 O -0.499 6.499 11 C -0.119 4.119 12 S -0.091 6.091 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.870 5.870 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 C 0.107 3.893 22 C -0.136 4.136 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.267 0.733 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 19.759 -4.090 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.027 3.973 3 C -0.228 4.228 4 C -0.071 4.071 5 C -0.182 4.182 6 C 0.151 3.849 7 N -0.218 5.218 8 N -0.279 5.279 9 C 0.330 3.670 10 O -0.371 6.371 11 C -0.269 4.269 12 S 0.136 5.864 13 C -0.670 4.670 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.506 5.506 17 Si 0.743 3.257 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.200 1.200 21 C -0.015 4.015 22 C -0.174 4.174 23 C -0.108 4.108 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.373 17.023 -4.046 20.868 hybrid contribution -1.286 2.332 0.235 2.674 sum 10.087 19.355 -3.811 22.156 Atomic orbital electron populations 1.20794 0.88375 1.03778 1.03668 1.21170 0.96981 0.87333 0.91857 1.21774 0.94624 0.99130 1.07222 1.21273 0.94223 0.96872 0.94701 1.20045 0.96755 0.92244 1.09206 1.18183 0.88347 0.85049 0.93357 1.67740 1.07081 1.29412 1.17570 1.45974 1.09979 1.04825 1.67159 1.20900 0.89635 0.82219 0.74208 1.90695 1.71116 1.26582 1.48673 1.23754 0.92074 1.05244 1.05853 1.85223 1.08211 1.02058 1.90933 1.22747 0.93735 0.96134 1.54370 0.90934 1.24983 0.99201 0.94478 0.95019 1.70029 1.35365 0.99359 1.45829 0.86255 0.82801 0.77782 0.78833 1.19954 1.20933 1.20029 1.21874 0.78342 1.01405 0.99926 1.21900 1.00500 0.94035 1.00968 1.20316 0.90176 0.98170 1.02129 0.89917 0.90659 0.89787 0.84838 0.84706 0.89245 0.86562 0.92340 0.87707 0.90743 0.90779 0.89458 0.90460 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.17 36.01 0.37 -0.90 16 2 C 0.17 2.21 6.78 -82.65 -0.56 1.65 16 3 C -0.21 -2.15 9.74 -39.45 -0.38 -2.53 16 4 C -0.04 -0.43 9.81 -39.26 -0.39 -0.82 16 5 C -0.18 -2.05 5.76 -104.43 -0.60 -2.65 16 6 C 0.38 5.82 7.09 -154.20 -1.09 4.72 16 7 N -0.50 -8.24 5.73 -8.54 -0.05 -8.29 16 8 N -0.55 -9.15 2.96 -114.75 -0.34 -9.49 16 9 C 0.54 11.40 7.68 -10.98 -0.08 11.31 16 10 O -0.50 -11.83 15.33 5.57 0.09 -11.75 16 11 C -0.12 -2.73 4.19 36.01 0.15 -2.58 16 12 S -0.09 -2.60 20.57 -107.50 -2.21 -4.82 16 13 C -0.52 -15.33 9.50 30.94 0.29 -15.04 16 14 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.87 13.22 55.49 0.73 -26.13 16 17 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.11 1.33 6.36 -3.61 -0.02 1.31 16 22 C -0.14 -1.25 6.12 -26.57 -0.16 -1.41 16 23 C -0.07 -0.59 5.78 -28.07 -0.16 -0.75 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 27 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 29 H 0.09 2.04 7.51 -51.92 -0.39 1.65 16 30 H 0.12 2.63 6.64 -51.92 -0.34 2.29 16 31 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 32 H 0.10 1.40 7.13 -51.93 -0.37 1.03 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -35.58 321.72 -9.57 -45.15 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.87 Total: -0.67 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.74 Total: -5.68 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.35 Total: -43.91 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.21 Total: -4.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.58 -9.57 -45.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876491012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.206 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds