Wall clock time and date at job start Tue Mar 31 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38110 * 119.61201 * 2 1 4 4 C 1.38715 * 119.22950 * 180.09780 * 3 2 1 5 5 C 1.38634 * 118.63136 * 359.97438 * 4 3 2 6 6 C 1.38691 * 119.06908 * 359.83229 * 5 4 3 7 7 N 1.31800 * 119.60311 * 179.97438 * 2 1 3 8 8 N 1.39764 * 120.58326 * 180.31782 * 6 5 4 9 9 C 1.34775 * 120.52424 * 166.12734 * 8 6 5 10 10 O 1.21270 * 120.00388 * 180.02562 * 9 8 6 11 11 C 1.50703 * 119.99754 * 0.02562 * 9 8 6 12 12 S 1.80999 * 109.47308 * 180.02562 * 11 9 8 13 13 C 1.76192 * 100.00216 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00048 * 0.02562 * 13 12 11 15 15 C 1.38802 * 120.00190 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00286 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 60.00040 * 17 15 13 19 19 H 1.48491 * 109.47356 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47223 * 300.00813 * 17 15 13 21 21 C 1.46888 * 118.95757 * 346.14295 * 8 6 5 22 22 C 1.53433 * 107.91390 * 44.95499 * 21 8 6 23 23 C 1.50458 * 119.13911 * 179.57577 * 5 4 3 24 24 H 1.08999 * 109.47654 * 270.02752 * 1 2 3 25 25 H 1.09007 * 109.46687 * 30.03162 * 1 2 3 26 26 H 1.09009 * 109.47074 * 150.02081 * 1 2 3 27 27 H 1.08003 * 120.38601 * 0.11940 * 3 2 1 28 28 H 1.07991 * 120.68504 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46829 * 300.00177 * 11 9 8 30 30 H 1.09003 * 109.47136 * 60.00179 * 11 9 8 31 31 H 0.97000 * 119.99584 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.78089 * 164.57551 * 21 8 6 33 33 H 1.09002 * 109.78206 * 285.33390 * 21 8 6 34 34 H 1.08995 * 109.58330 * 56.66442 * 22 21 8 35 35 H 1.08997 * 109.57976 * 177.07326 * 22 21 8 36 36 H 1.08999 * 109.30280 * 280.10587 * 23 5 4 37 37 H 1.09002 * 109.30571 * 39.50355 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.2007 0.0000 4 6 3.5766 1.1915 -0.0021 5 6 4.2327 -0.0298 -0.0035 6 6 3.4838 -1.1971 0.0007 7 7 2.1581 -1.1460 0.0005 8 7 4.1126 -2.4453 0.0060 9 6 3.4138 -3.5626 0.2884 10 8 3.9689 -4.6407 0.2909 11 6 1.9423 -3.4721 0.6012 12 16 1.2935 -5.1284 0.9355 13 6 -0.3930 -4.7363 1.2614 14 1 -0.7275 -3.7104 1.2159 15 6 -1.2921 -5.7461 1.5755 16 7 -0.8846 -6.9966 1.6305 17 14 -3.0801 -5.3304 1.9217 18 1 -3.6764 -4.6775 0.7287 19 1 -3.8271 -6.5761 2.2301 20 1 -3.1579 -4.4069 3.0820 21 6 5.5472 -2.5203 -0.3006 22 6 6.2552 -1.4040 0.4782 23 6 5.7371 -0.0532 -0.0155 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5144 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6494 2.1360 0.0019 28 1 4.1339 2.1165 -0.0025 29 1 1.7954 -2.8409 1.4776 30 1 1.4158 -3.0403 -0.2500 31 1 -1.5128 -7.7021 1.8504 32 1 5.9396 -3.4900 0.0057 33 1 5.7036 -2.3804 -1.3703 34 1 6.0424 -1.5090 1.5420 35 1 7.3304 -1.4671 0.3107 36 1 6.0920 0.1186 -1.0317 37 1 6.1150 0.7369 0.6334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876491012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:48 Heat of formation + Delta-G solvation = -11.860305 kcal Electronic energy + Delta-G solvation = -21046.658227 eV Core-core repulsion = 17914.481831 eV Total energy + Delta-G solvation = -3132.176397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35601 -40.37577 -37.90197 -35.54505 -34.58534 -33.17794 -32.10967 -30.89401 -28.97283 -27.69985 -26.02225 -25.06073 -23.51425 -21.94292 -20.78981 -19.87965 -18.38429 -17.86878 -17.22653 -16.88299 -16.78018 -16.54730 -15.96521 -15.49498 -15.37126 -14.98276 -14.70305 -14.51724 -14.33551 -14.22819 -13.84080 -13.51479 -13.44358 -13.19604 -13.02060 -12.87134 -12.62911 -12.43375 -12.11291 -11.89565 -11.77687 -11.35705 -11.17648 -11.12919 -10.63647 -10.43568 -9.89957 -9.07246 -8.68487 -8.33990 -6.13082 0.03943 0.31786 1.17372 1.38174 1.41145 1.43122 1.51693 1.87891 2.27938 2.76344 2.99412 3.01586 3.39321 3.61972 3.68569 3.80515 3.95440 3.99393 4.10664 4.20618 4.35125 4.44346 4.54629 4.63400 4.73173 4.76202 4.79130 4.81904 4.88999 4.99527 5.02549 5.17672 5.22050 5.28900 5.37106 5.41317 5.68556 6.10127 6.20865 6.69659 7.06031 7.11213 8.75666 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005192 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.623384 B = 5392.115449 C = 6783.618931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.135 3.865 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.166 4.166 6 C 0.334 3.666 7 N -0.548 5.548 8 N -0.547 5.547 9 C 0.537 3.463 10 O -0.541 6.541 11 C -0.080 4.080 12 S -0.175 6.175 13 C -0.536 4.536 14 H 0.077 0.923 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 1.000 3.000 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.262 1.262 21 C 0.098 3.902 22 C -0.127 4.127 23 C -0.068 4.068 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.053 0.947 27 H 0.171 0.829 28 H 0.182 0.818 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.271 0.729 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 24.271 -4.341 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.003 4.003 3 C -0.207 4.207 4 C -0.065 4.065 5 C -0.171 4.171 6 C 0.106 3.894 7 N -0.264 5.264 8 N -0.274 5.274 9 C 0.326 3.674 10 O -0.417 6.417 11 C -0.231 4.231 12 S 0.053 5.947 13 C -0.684 4.684 14 H 0.095 0.905 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.023 4.023 22 C -0.165 4.165 23 C -0.105 4.105 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.188 0.812 28 H 0.200 0.800 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.890 21.611 -4.311 25.040 hybrid contribution -1.355 1.121 0.262 1.778 sum 10.535 22.733 -4.049 25.380 Atomic orbital electron populations 1.20822 0.87982 1.03994 1.03546 1.21511 0.97589 0.87805 0.93441 1.22197 0.95364 0.99157 1.03968 1.21830 0.94118 0.97718 0.92799 1.20505 0.98590 0.91343 1.06656 1.18527 0.88660 0.85361 0.96802 1.67427 1.08398 1.31870 1.18734 1.45876 1.11267 1.04175 1.66044 1.20499 0.89023 0.83225 0.74648 1.90662 1.71545 1.28316 1.51162 1.23483 0.93817 1.00303 1.05461 1.85312 1.09823 1.08233 1.91374 1.23021 0.93716 0.96650 1.55033 0.90482 1.26155 1.04766 0.94032 0.94111 1.70196 1.37415 1.00682 1.46557 0.84993 0.75588 0.78001 0.79338 1.18508 1.20054 1.18654 1.22214 0.76179 1.02286 1.01622 1.21911 1.02062 0.93200 0.99317 1.20470 0.87672 0.98202 1.04201 0.90218 0.87192 0.92766 0.81189 0.80038 0.89670 0.86698 0.91995 0.89504 0.89022 0.92371 0.85938 0.88100 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 10.17 71.24 0.72 -1.68 16 2 C 0.13 3.45 6.78 42.53 0.29 3.73 16 3 C -0.19 -3.14 9.74 22.35 0.22 -2.92 16 4 C -0.04 -0.56 9.81 22.48 0.22 -0.34 16 5 C -0.17 -3.29 5.76 -19.74 -0.11 -3.41 16 6 C 0.33 10.06 7.09 132.61 0.94 11.00 16 7 N -0.55 -18.26 5.73 -180.94 -1.04 -19.29 16 8 N -0.55 -18.60 2.96 -635.34 -1.88 -20.48 16 9 C 0.54 24.11 7.68 87.66 0.67 24.78 16 10 O -0.54 -27.58 15.33 -3.00 -0.05 -27.62 16 11 C -0.08 -3.90 4.19 71.24 0.30 -3.61 16 12 S -0.17 -10.63 20.57 -56.49 -1.16 -11.79 16 13 C -0.54 -32.84 9.50 67.96 0.65 -32.20 16 14 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 15 C 0.01 0.82 5.49 84.86 0.47 1.29 16 16 N -0.91 -58.22 13.22 21.65 0.29 -57.93 16 17 Si 1.00 45.37 29.55 68.60 2.03 47.40 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.10 2.40 6.36 86.45 0.55 2.95 16 22 C -0.13 -1.98 6.12 30.70 0.19 -1.79 16 23 C -0.07 -0.82 5.78 29.73 0.17 -0.65 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.11 1.62 8.08 -2.38 -0.02 1.60 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.18 0.98 8.06 -2.92 -0.02 0.95 16 29 H 0.09 4.15 7.51 -2.40 -0.02 4.14 16 30 H 0.12 5.59 6.64 -2.39 -0.02 5.57 16 31 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 32 H 0.09 2.42 7.13 -2.39 -0.02 2.41 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.75 8.13 -2.39 -0.02 0.73 16 Total: -1.00 -84.66 321.72 4.53 -80.13 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.07 Total: 12.44 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.27 Total: -2.85 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -2.63 Total: -97.71 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -10.63 SS G_CDS: -1.16 Total: -11.79 kcal Total: -84.66 4.53 -80.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876491012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.271 kcal (2) G-P(sol) polarization free energy of solvation -84.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds