Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48498 * 109.47047 * 240.00322 * 3 2 1 5 5 H 1.48503 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46882 * 119.99644 * 3 2 1 7 7 C 1.40023 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00566 * 180.02562 * 7 2 1 9 9 C 1.41340 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.40618 * 119.78782 * 180.02562 * 9 7 2 11 11 C 1.38309 * 119.12463 * 180.02562 * 10 9 7 12 12 C 1.38689 * 118.67231 * 0.02562 * 11 10 9 13 13 C 1.39633 * 119.49825 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57336 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99418 * 185.35709 * 14 13 12 16 16 O 1.21267 * 120.00596 * 354.87174 * 15 14 13 17 17 C 1.50706 * 119.99515 * 174.86665 * 15 14 13 18 18 H 1.08993 * 109.38955 * 300.20500 * 17 15 14 19 19 C 1.52577 * 109.30736 * 180.44576 * 17 15 14 20 20 C 1.52585 * 110.72545 * 169.22709 * 19 17 15 21 21 C 1.53102 * 109.95320 * 70.67473 * 20 19 17 22 22 S 1.81747 * 108.84379 * 296.97562 * 21 20 19 23 23 C 1.53096 * 109.38825 * 60.00300 * 17 15 14 24 24 N 1.31926 * 120.84969 * 0.26425 * 13 12 11 25 25 H 0.96994 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.43815 * 0.04800 * 10 9 7 27 27 H 1.08007 * 120.65799 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.25087 * 180.02562 * 12 11 10 29 29 H 0.96996 * 120.00218 * 5.36243 * 14 13 12 30 30 H 1.09003 * 109.22446 * 48.91098 * 19 17 15 31 31 H 1.08994 * 109.22896 * 289.55127 * 19 17 15 32 32 H 1.08998 * 109.39119 * 310.52812 * 20 19 17 33 33 H 1.09000 * 109.39177 * 190.82747 * 20 19 17 34 34 H 1.09000 * 109.57358 * 56.78935 * 21 20 19 35 35 H 1.08998 * 109.57425 * 177.16730 * 21 20 19 36 36 H 1.09006 * 109.57651 * 63.26376 * 23 17 15 37 37 H 1.08998 * 109.57881 * 302.88048 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6519 -0.0005 11 6 1.3032 -4.8416 -0.0011 12 6 -0.0829 -4.7934 -0.0022 13 6 -0.7278 -3.5549 -0.0021 14 7 -2.1196 -3.5048 -0.0037 15 6 -2.7509 -2.3190 -0.1127 16 8 -2.1107 -1.2891 -0.1157 17 6 -4.2527 -2.2730 -0.2309 18 1 -4.5627 -2.8232 -1.1193 19 6 -4.7050 -0.8208 -0.3509 20 6 -6.1793 -0.7446 -0.7368 21 6 -7.0511 -1.1927 0.4393 22 16 -6.6865 -2.9342 0.8101 23 6 -4.8800 -2.9150 1.0092 24 7 -0.0357 -2.4318 -0.0063 25 1 -0.4850 0.8400 -0.0004 26 1 3.0885 -3.6561 0.0002 27 1 1.8215 -5.7891 -0.0007 28 1 -0.6590 -5.7069 -0.0022 29 1 -2.6345 -4.3231 0.0736 30 1 -4.1081 -0.3207 -1.1136 31 1 -4.5579 -0.3188 0.6054 32 1 -6.3636 -1.3946 -1.5921 33 1 -6.4310 0.2819 -1.0034 34 1 -6.8297 -0.5792 1.3126 35 1 -8.1033 -1.0883 0.1745 36 1 -4.6162 -2.3351 1.8938 37 1 -4.5137 -3.9359 1.1170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = -8.559977 kcal Electronic energy + Delta-G solvation = -21219.580196 eV Core-core repulsion = 18087.546913 eV Total energy + Delta-G solvation = -3132.033284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19625 -39.57909 -37.18753 -35.92166 -34.88278 -32.88347 -32.19641 -30.73506 -28.19706 -27.51125 -25.38793 -23.66255 -23.09557 -21.91420 -20.62908 -19.60074 -18.31159 -17.88951 -17.04409 -16.55525 -16.43508 -16.27027 -15.72131 -15.43646 -15.22321 -14.98962 -14.63140 -14.46176 -13.99101 -13.96138 -13.65223 -13.56634 -12.88333 -12.74679 -12.58719 -12.51510 -12.38933 -12.31997 -11.97040 -11.81590 -11.78085 -11.49144 -10.87557 -10.84563 -10.44385 -9.90208 -9.09983 -8.82950 -8.68415 -8.06109 -6.42744 0.74695 0.91655 1.24307 1.38855 1.47381 1.49998 1.53190 2.11595 2.25593 2.33266 2.98308 3.62520 3.65166 3.73497 3.90438 4.05103 4.10417 4.21859 4.35863 4.40440 4.52351 4.62683 4.73570 4.79747 4.86760 4.89711 4.95357 5.04323 5.06928 5.15015 5.28181 5.31797 5.67712 5.84592 5.92352 6.14426 6.36311 6.72995 6.83063 7.07462 7.67205 8.33629 8.55674 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.005127 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.795747 B = 5459.498123 C = 6904.558003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.013 3.987 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.330 4.330 11 C -0.035 4.035 12 C -0.347 4.347 13 C 0.348 3.652 14 N -0.655 5.655 15 C 0.469 3.531 16 O -0.454 6.454 17 C -0.087 4.087 18 H 0.119 0.881 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.078 4.078 22 S -0.270 6.270 23 C -0.066 4.066 24 N -0.507 5.507 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.418 0.582 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 -2.731 -0.196 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.213 4.213 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.353 4.353 11 C -0.059 4.059 12 C -0.372 4.372 13 C 0.109 3.891 14 N -0.304 5.304 15 C 0.251 3.749 16 O -0.321 6.321 17 C -0.111 4.111 18 H 0.137 0.863 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.226 4.226 22 S -0.043 6.043 23 C -0.214 4.214 24 N -0.226 5.226 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.256 0.744 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.185 -1.843 -0.113 15.297 hybrid contribution 1.786 0.384 0.052 1.827 sum -13.400 -1.459 -0.062 13.479 Atomic orbital electron populations 1.70505 1.07197 1.28020 1.25173 1.27001 0.96035 1.03871 0.94376 0.85408 0.78709 0.76606 0.79842 1.18534 1.19783 1.18545 1.19875 0.94441 0.90526 1.44965 0.89723 1.18875 0.88035 0.93335 0.88633 1.21812 0.99192 0.93888 1.20408 1.21034 0.93612 0.97306 0.93942 1.20987 0.95194 0.95816 1.25198 1.19167 0.85289 0.91056 0.93548 1.43444 1.03522 1.10544 1.72856 1.21532 0.90772 0.84172 0.78436 1.91146 1.66775 1.32497 1.41640 1.21493 0.89590 0.99627 1.00362 0.86348 1.21287 0.97005 0.93834 1.02408 1.21686 0.91917 1.03627 0.97714 1.23577 1.04491 0.92939 1.01560 1.86822 1.07550 1.16322 1.93585 1.23329 0.93738 1.05405 0.98963 1.68665 1.07255 1.25346 1.21357 0.91898 0.87846 0.84618 0.85103 0.74394 0.92066 0.92698 0.89854 0.88936 0.89625 0.85591 0.90391 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.46 9.00 21.84 0.20 -39.27 16 2 C 0.01 0.69 5.50 85.29 0.47 1.16 16 3 Si 0.97 40.66 29.56 68.60 2.03 42.68 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.47 -26.74 9.14 23.47 0.21 -26.53 16 8 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.24 13.74 6.55 40.21 0.26 14.01 16 10 C -0.33 -16.80 9.83 22.87 0.22 -16.58 16 11 C -0.03 -1.52 10.15 22.39 0.23 -1.29 16 12 C -0.35 -14.81 9.95 22.71 0.23 -14.58 16 13 C 0.35 16.78 7.43 133.23 0.99 17.77 16 14 N -0.65 -24.71 5.30 -308.38 -1.63 -26.34 16 15 C 0.47 18.21 7.10 87.66 0.62 18.83 16 16 O -0.45 -22.83 11.54 -2.99 -0.03 -22.86 16 17 C -0.09 -2.33 2.38 -11.65 -0.03 -2.36 16 18 H 0.12 2.75 8.06 -2.39 -0.02 2.73 16 19 C -0.11 -2.81 4.37 30.32 0.13 -2.68 16 20 C -0.11 -1.98 5.75 30.49 0.18 -1.80 16 21 C -0.08 -1.27 6.45 72.02 0.46 -0.81 16 22 S -0.27 -5.48 22.33 -56.49 -1.26 -6.74 16 23 C -0.07 -1.50 5.65 72.01 0.41 -1.09 16 24 N -0.51 -29.04 5.74 -186.35 -1.07 -30.11 16 25 H 0.27 14.56 8.29 -92.71 -0.77 13.80 16 26 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 27 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 29 H 0.42 11.64 7.93 -92.71 -0.74 10.90 16 30 H 0.06 1.91 7.70 -2.39 -0.02 1.90 16 31 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.12 2.37 7.38 -2.39 -0.02 2.35 16 Total: -1.00 -71.99 315.12 2.97 -69.02 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.35 Total: 29.57 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.39 Total: -15.96 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -2.51 Total: -95.72 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.03 Total: -22.86 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.26 Total: -6.74 kcal Total: -71.99 2.97 -69.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.462 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds