Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00408 * 2 1 4 4 H 1.48491 * 109.47658 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47167 * 300.00695 * 3 2 1 6 6 H 1.48506 * 109.46781 * 60.00043 * 3 2 1 7 7 C 1.40030 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00373 * 179.71902 * 7 2 1 9 9 C 1.41342 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.40611 * 119.78761 * 179.72790 * 9 7 2 11 11 C 1.38307 * 119.12976 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66786 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49614 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57225 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99945 * 174.66143 * 14 13 12 16 16 O 1.21272 * 119.99904 * 5.14432 * 15 14 13 17 17 C 1.50702 * 120.00197 * 185.14088 * 15 14 13 18 18 H 1.09006 * 109.57270 * 30.00016 * 17 15 14 19 19 C 1.53100 * 109.57434 * 150.25559 * 17 15 14 20 20 C 1.52587 * 109.95308 * 182.83706 * 19 17 15 21 21 C 1.52581 * 110.72413 * 289.32382 * 20 19 17 22 22 C 1.53098 * 109.95410 * 70.67619 * 21 20 19 23 23 S 1.81745 * 109.57948 * 269.74480 * 17 15 14 24 24 N 1.31927 * 120.85324 * 359.74060 * 13 12 11 25 25 H 0.96996 * 119.99771 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43540 * 359.95312 * 10 9 7 27 27 H 1.07997 * 120.66378 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25099 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00236 * 354.65254 * 14 13 12 30 30 H 1.08997 * 109.38983 * 302.98144 * 19 17 15 31 31 H 1.08993 * 109.39045 * 62.68961 * 19 17 15 32 32 H 1.09000 * 109.22467 * 49.64582 * 20 19 17 33 33 H 1.08996 * 109.22436 * 169.04621 * 20 19 17 34 34 H 1.08997 * 109.38851 * 190.82746 * 21 20 19 35 35 H 1.09006 * 109.39122 * 310.52935 * 21 20 19 36 36 H 1.08999 * 109.57521 * 56.78641 * 22 21 20 37 37 H 1.09014 * 109.57137 * 177.16459 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0051 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0069 11 6 1.3031 -4.8416 -0.0063 12 6 -0.0830 -4.7934 0.0012 13 6 -0.7278 -3.5549 0.0072 14 7 -2.1196 -3.5046 0.0153 15 6 -2.7505 -2.3192 0.1297 16 8 -2.1102 -1.2893 0.1319 17 6 -4.2516 -2.2734 0.2551 18 1 -4.6043 -3.1772 0.7520 19 6 -4.6608 -1.0455 1.0727 20 6 -6.1745 -1.0286 1.2648 21 6 -6.8820 -0.7129 -0.0496 22 6 -6.7544 -1.8986 -1.0097 23 16 -4.9975 -2.1570 -1.3982 24 7 -0.0357 -2.4317 0.0111 25 1 -0.4849 0.8400 0.0004 26 1 3.0884 -3.6560 -0.0125 27 1 1.8213 -5.7891 -0.0115 28 1 -0.6592 -5.7069 0.0014 29 1 -2.6349 -4.3228 -0.0617 30 1 -4.1729 -1.0803 2.0468 31 1 -4.3527 -0.1417 0.5472 32 1 -6.5017 -2.0046 1.6232 33 1 -6.4342 -0.2697 2.0028 34 1 -7.9364 -0.5166 0.1450 35 1 -6.4287 0.1693 -0.5019 36 1 -7.1580 -2.7949 -0.5386 37 1 -7.3043 -1.6867 -1.9268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = 11.780851 kcal Electronic energy + Delta-G solvation = -21143.129628 eV Core-core repulsion = 18011.978389 eV Total energy + Delta-G solvation = -3131.151239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.38832 -37.70141 -36.42746 -34.11583 -32.99651 -31.64095 -30.28860 -29.15028 -27.48994 -25.53016 -23.77598 -21.86064 -21.16603 -20.65385 -19.40903 -17.83582 -16.93167 -16.20592 -16.12254 -15.05568 -14.65800 -14.62089 -14.43099 -14.00339 -13.73689 -13.63507 -13.17271 -13.07198 -12.72302 -12.67593 -11.96148 -11.81534 -11.55179 -11.46372 -11.14901 -10.95842 -10.92830 -10.62765 -10.62070 -10.46673 -9.90605 -9.71962 -9.61790 -9.02211 -8.98625 -7.95758 -7.61503 -7.21762 -6.96086 -6.12979 -4.38540 1.53210 2.47792 2.82492 3.10648 3.19017 3.22490 3.27904 3.72102 3.92063 4.07860 4.55449 4.63931 4.80977 4.87756 4.94118 5.11017 5.20653 5.31362 5.46934 5.55454 5.73206 5.89419 5.91219 6.04620 6.05892 6.13101 6.34769 6.50131 6.68080 6.84183 6.85938 7.24815 7.55627 7.62778 7.82360 8.05767 8.20290 8.46334 8.74569 9.05711 9.21257 10.24972 10.49501 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.005484 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993960 B = 5104.588479 C = 6402.062337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.304 4.304 11 C -0.036 4.036 12 C -0.356 4.356 13 C 0.372 3.628 14 N -0.660 5.660 15 C 0.491 3.509 16 O -0.389 6.389 17 C -0.074 4.074 18 H 0.096 0.904 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.090 4.090 23 S -0.223 6.223 24 N -0.473 5.473 25 H 0.272 0.728 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.400 0.600 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 -2.225 1.349 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.327 4.327 11 C -0.061 4.061 12 C -0.381 4.381 13 C 0.133 3.867 14 N -0.307 5.307 15 C 0.269 3.731 16 O -0.252 6.252 17 C -0.206 4.206 18 H 0.114 0.886 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.238 4.238 23 S 0.003 5.997 24 N -0.193 5.193 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.233 0.767 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.691 -0.493 0.370 13.705 hybrid contribution -0.146 -0.733 1.097 1.327 sum -13.837 -1.226 1.467 13.969 Atomic orbital electron populations 1.70314 1.05781 1.27343 1.24006 1.26174 0.95122 1.00593 0.95223 0.86465 0.80910 0.82251 0.78378 1.18604 1.20040 1.20071 1.19619 0.94092 0.89351 1.42467 0.89906 1.18395 0.87133 0.91996 0.87917 1.21628 0.98563 0.93530 1.19012 1.20558 0.93153 0.96540 0.95801 1.20486 0.94807 0.94924 1.27921 1.18591 0.83103 0.91013 0.93959 1.43341 1.05195 1.09014 1.73200 1.19765 0.87109 0.85409 0.80784 1.91159 1.64241 1.30744 1.39015 1.23460 0.97615 1.02876 0.96635 0.88567 1.21569 0.94928 0.97290 1.00556 1.21542 0.95181 1.02236 0.97515 1.21723 1.01027 0.97988 0.95383 1.23510 0.95482 1.01424 1.03403 1.87308 1.05385 1.95862 1.11172 1.68682 1.07069 1.23205 1.20294 0.91630 0.88550 0.88603 0.89066 0.76656 0.90493 0.89224 0.91973 0.90875 0.91087 0.90352 0.90055 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.27 9.00 55.55 0.50 -17.77 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 3 Si 0.90 19.42 29.56 -169.99 -5.02 14.40 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.42 -11.79 9.14 -37.73 -0.34 -12.13 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 9 C 0.27 7.69 6.55 -84.99 -0.56 7.13 16 10 C -0.30 -7.75 9.83 -38.66 -0.38 -8.13 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.12 9.95 -38.89 -0.39 -8.51 16 13 C 0.37 9.23 7.43 -154.97 -1.15 8.08 16 14 N -0.66 -13.42 5.38 -11.40 -0.06 -13.48 16 15 C 0.49 10.04 6.87 -10.99 -0.08 9.96 16 16 O -0.39 -9.78 12.01 5.56 0.07 -9.71 16 17 C -0.07 -1.10 2.90 -27.83 -0.08 -1.18 16 18 H 0.10 1.21 8.14 -51.92 -0.42 0.78 16 19 C -0.10 -1.44 4.59 -26.89 -0.12 -1.56 16 20 C -0.13 -1.28 5.61 -27.16 -0.15 -1.43 16 21 C -0.12 -1.14 5.76 -26.90 -0.15 -1.30 16 22 C -0.09 -0.89 6.45 37.21 0.24 -0.65 16 23 S -0.22 -3.25 21.70 -107.50 -2.33 -5.58 16 24 N -0.47 -13.44 5.74 -10.25 -0.06 -13.50 16 25 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 26 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 27 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.40 6.45 8.70 -40.82 -0.36 6.10 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.42 7.86 -51.93 -0.41 1.02 16 32 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -32.41 317.29 -10.74 -43.15 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.95 Total: 7.21 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.66 Total: -9.51 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.38 Total: -44.74 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.33 Total: -5.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.41 -10.74 -43.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.934 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds