Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00408 * 2 1 4 4 H 1.48491 * 109.47658 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47167 * 300.00695 * 3 2 1 6 6 H 1.48506 * 109.46781 * 60.00043 * 3 2 1 7 7 C 1.40030 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00373 * 179.71902 * 7 2 1 9 9 C 1.41342 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.40611 * 119.78761 * 179.72790 * 9 7 2 11 11 C 1.38307 * 119.12976 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66786 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49614 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57225 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99945 * 174.66143 * 14 13 12 16 16 O 1.21272 * 119.99904 * 5.14432 * 15 14 13 17 17 C 1.50702 * 120.00197 * 185.14088 * 15 14 13 18 18 H 1.09006 * 109.57270 * 30.00016 * 17 15 14 19 19 C 1.53100 * 109.57434 * 150.25559 * 17 15 14 20 20 C 1.52587 * 109.95308 * 182.83706 * 19 17 15 21 21 C 1.52581 * 110.72413 * 289.32382 * 20 19 17 22 22 C 1.53098 * 109.95410 * 70.67619 * 21 20 19 23 23 S 1.81745 * 109.57948 * 269.74480 * 17 15 14 24 24 N 1.31927 * 120.85324 * 359.74060 * 13 12 11 25 25 H 0.96996 * 119.99771 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43540 * 359.95312 * 10 9 7 27 27 H 1.07997 * 120.66378 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25099 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00236 * 354.65254 * 14 13 12 30 30 H 1.08997 * 109.38983 * 302.98144 * 19 17 15 31 31 H 1.08993 * 109.39045 * 62.68961 * 19 17 15 32 32 H 1.09000 * 109.22467 * 49.64582 * 20 19 17 33 33 H 1.08996 * 109.22436 * 169.04621 * 20 19 17 34 34 H 1.08997 * 109.38851 * 190.82746 * 21 20 19 35 35 H 1.09006 * 109.39122 * 310.52935 * 21 20 19 36 36 H 1.08999 * 109.57521 * 56.78641 * 22 21 20 37 37 H 1.09014 * 109.57137 * 177.16459 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0051 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0069 11 6 1.3031 -4.8416 -0.0063 12 6 -0.0830 -4.7934 0.0012 13 6 -0.7278 -3.5549 0.0072 14 7 -2.1196 -3.5046 0.0153 15 6 -2.7505 -2.3192 0.1297 16 8 -2.1102 -1.2893 0.1319 17 6 -4.2516 -2.2734 0.2551 18 1 -4.6043 -3.1772 0.7520 19 6 -4.6608 -1.0455 1.0727 20 6 -6.1745 -1.0286 1.2648 21 6 -6.8820 -0.7129 -0.0496 22 6 -6.7544 -1.8986 -1.0097 23 16 -4.9975 -2.1570 -1.3982 24 7 -0.0357 -2.4317 0.0111 25 1 -0.4849 0.8400 0.0004 26 1 3.0884 -3.6560 -0.0125 27 1 1.8213 -5.7891 -0.0115 28 1 -0.6592 -5.7069 0.0014 29 1 -2.6349 -4.3228 -0.0617 30 1 -4.1729 -1.0803 2.0468 31 1 -4.3527 -0.1417 0.5472 32 1 -6.5017 -2.0046 1.6232 33 1 -6.4342 -0.2697 2.0028 34 1 -7.9364 -0.5166 0.1450 35 1 -6.4287 0.1693 -0.5019 36 1 -7.1580 -2.7949 -0.5386 37 1 -7.3043 -1.6867 -1.9268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -7.338185 kcal Electronic energy + Delta-G solvation = -21143.958691 eV Core-core repulsion = 18011.978389 eV Total energy + Delta-G solvation = -3131.980303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07617 -39.44804 -37.47231 -35.94719 -34.86998 -32.79036 -32.20327 -30.92250 -28.61550 -27.42312 -24.99886 -23.55772 -22.92515 -21.61396 -21.05358 -19.64671 -18.28809 -17.94365 -17.57637 -16.51689 -16.28490 -16.08023 -15.83274 -15.54247 -15.15543 -14.89699 -14.65768 -14.36090 -14.23847 -13.98254 -13.63617 -13.39038 -12.90462 -12.74250 -12.56819 -12.53812 -12.38452 -12.31909 -11.84651 -11.75941 -11.57198 -11.53647 -10.89125 -10.79797 -10.53716 -9.91467 -9.12329 -8.85361 -8.73328 -8.06486 -6.43077 0.35822 0.95662 1.25616 1.38755 1.50022 1.51851 1.53672 2.19360 2.25546 2.32255 2.99157 3.55759 3.63524 3.86253 3.92015 4.03796 4.13803 4.16073 4.37451 4.43952 4.64530 4.69956 4.74790 4.87160 4.93468 4.94824 5.02043 5.04282 5.10699 5.15380 5.27295 5.36171 5.66847 5.82507 5.91368 6.13395 6.34756 6.68972 6.81381 7.06269 7.59294 8.32271 8.55572 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.005484 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993960 B = 5104.588479 C = 6402.062337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.236 3.764 10 C -0.328 4.328 11 C -0.034 4.034 12 C -0.345 4.345 13 C 0.348 3.652 14 N -0.651 5.651 15 C 0.481 3.519 16 O -0.442 6.442 17 C -0.055 4.055 18 H 0.128 0.872 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.070 4.070 23 S -0.283 6.283 24 N -0.508 5.508 25 H 0.270 0.730 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.131 0.869 29 H 0.419 0.581 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.167 -3.462 1.752 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.214 4.214 3 Si 0.796 3.204 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.351 4.351 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.109 3.891 14 N -0.300 5.300 15 C 0.263 3.737 16 O -0.308 6.308 17 C -0.186 4.186 18 H 0.146 0.854 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.218 4.218 23 S -0.058 6.058 24 N -0.227 5.227 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.257 0.743 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.897 -1.788 0.773 16.016 hybrid contribution 0.426 -0.523 0.948 1.163 sum -15.472 -2.311 1.721 15.738 Atomic orbital electron populations 1.70517 1.07321 1.27919 1.25262 1.27040 0.96007 1.04032 0.94360 0.85275 0.79644 0.77121 0.78390 1.17641 1.19685 1.19468 1.19934 0.94461 0.90429 1.44758 0.89573 1.18899 0.87918 0.93465 0.88676 1.21819 0.99250 0.93810 1.20193 1.21037 0.93477 0.97386 0.93912 1.20972 0.95257 0.95664 1.25161 1.19135 0.84954 0.91226 0.93763 1.43359 1.03805 1.10272 1.72588 1.20721 0.89427 0.84563 0.79029 1.91151 1.66128 1.32390 1.41123 1.23259 0.93324 1.04740 0.97314 0.85434 1.21542 0.98058 0.95424 0.99079 1.21518 0.91744 1.03930 0.98465 1.21727 1.02693 0.96996 0.94533 1.23660 0.90765 1.02748 1.04582 1.87515 1.10505 1.96175 1.11602 1.68651 1.07411 1.25334 1.21333 0.91960 0.87663 0.84422 0.85076 0.74330 0.91726 0.92390 0.89914 0.89538 0.87669 0.92110 0.87605 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.69 9.00 21.84 0.20 -40.49 16 2 C 0.01 0.61 5.50 85.29 0.47 1.08 16 3 Si 0.97 41.59 29.56 68.60 2.03 43.62 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.46 -27.04 9.14 23.47 0.21 -26.82 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 9 C 0.24 13.95 6.55 40.21 0.26 14.22 16 10 C -0.33 -16.92 9.83 22.87 0.22 -16.70 16 11 C -0.03 -1.51 10.15 22.40 0.23 -1.29 16 12 C -0.35 -15.19 9.95 22.72 0.23 -14.96 16 13 C 0.35 17.42 7.43 133.23 0.99 18.41 16 14 N -0.65 -26.44 5.38 -308.38 -1.66 -28.10 16 15 C 0.48 20.18 6.87 87.66 0.60 20.79 16 16 O -0.44 -23.48 12.01 -3.01 -0.04 -23.52 16 17 C -0.05 -1.61 2.90 29.88 0.09 -1.52 16 18 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 19 C -0.10 -2.80 4.59 30.49 0.14 -2.66 16 20 C -0.12 -2.06 5.61 30.32 0.17 -1.89 16 21 C -0.12 -1.87 5.76 30.49 0.18 -1.70 16 22 C -0.07 -1.15 6.45 72.02 0.46 -0.68 16 23 S -0.28 -8.00 21.70 -56.49 -1.23 -9.22 16 24 N -0.51 -29.94 5.74 -186.35 -1.07 -31.01 16 25 H 0.27 14.97 8.29 -92.71 -0.77 14.20 16 26 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 27 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 28 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.42 12.94 8.70 -92.71 -0.81 12.13 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.95 7.86 -2.39 -0.02 1.93 16 32 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.19 8.06 -2.38 -0.02 1.17 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -76.11 317.29 2.77 -73.34 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.28 Total: 29.11 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.25 Total: -13.73 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -2.53 Total: -99.61 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.04 Total: -23.52 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.23 Total: -9.22 kcal Total: -76.11 2.77 -73.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.003 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds