Wall clock time and date at job start Tue Mar 31 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47731 * 274.99184 * 3 2 1 5 5 H 1.48500 * 109.47236 * 34.99364 * 3 2 1 6 6 H 1.48505 * 109.46880 * 154.98874 * 3 2 1 7 7 C 1.40019 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99903 * 173.64373 * 7 2 1 9 9 C 1.41341 * 120.00335 * 353.64474 * 7 2 1 10 10 C 1.40612 * 119.79163 * 186.38507 * 9 7 2 11 11 C 1.38300 * 119.12809 * 179.97438 * 10 9 7 12 12 C 1.38689 * 118.66993 * 359.75070 * 11 10 9 13 13 C 1.39632 * 119.49661 * 0.47963 * 12 11 10 14 14 N 1.39270 * 119.57270 * 179.79000 * 13 12 11 15 15 C 1.34778 * 120.00210 * 341.09423 * 14 13 12 16 16 O 1.21271 * 119.99690 * 354.40746 * 15 14 13 17 17 C 1.50703 * 120.00067 * 174.40163 * 15 14 13 18 18 H 1.09005 * 109.67725 * 335.32699 * 17 15 14 19 19 C 1.53087 * 109.57721 * 214.99897 * 17 15 14 20 20 C 1.52580 * 109.95735 * 177.16884 * 19 17 15 21 21 C 1.52580 * 110.72536 * 70.67819 * 20 19 17 22 22 C 1.53092 * 109.95388 * 289.32320 * 21 20 19 23 23 S 1.81749 * 108.84237 * 63.02885 * 22 21 20 24 24 N 1.31924 * 120.84809 * 359.50507 * 13 12 11 25 25 H 0.97006 * 120.00497 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43094 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66344 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.25541 * 180.26267 * 12 11 10 29 29 H 0.97002 * 120.00198 * 161.09632 * 14 13 12 30 30 H 1.09007 * 109.38870 * 57.02429 * 19 17 15 31 31 H 1.08996 * 109.39759 * 297.32130 * 19 17 15 32 32 H 1.09008 * 109.22941 * 190.99785 * 20 19 17 33 33 H 1.09000 * 109.22901 * 310.35597 * 20 19 17 34 34 H 1.09000 * 109.39247 * 49.47704 * 21 20 19 35 35 H 1.08999 * 109.39214 * 169.17740 * 21 20 19 36 36 H 1.09007 * 109.57871 * 182.83104 * 22 21 20 37 37 H 1.08996 * 109.58345 * 303.21692 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3833 2.1075 -1.3947 5 1 1.4955 2.6199 0.8029 6 1 3.5876 1.4121 0.5920 7 6 2.0076 -1.2126 -0.0005 8 1 3.0826 -1.2154 -0.1041 9 6 1.3075 -2.4330 0.1344 10 6 2.0215 -3.6369 0.2686 11 6 1.3226 -4.8230 0.4003 12 6 -0.0637 -4.7820 0.4005 13 6 -0.7152 -3.5551 0.2588 14 7 -2.1072 -3.5126 0.2544 15 6 -2.8149 -4.6319 0.0035 16 8 -2.2427 -5.6517 -0.3179 17 6 -4.3171 -4.6161 0.1225 18 1 -4.6228 -3.8246 0.8068 19 6 -4.8040 -5.9678 0.6513 20 6 -6.3176 -5.9379 0.8417 21 6 -7.0311 -5.9145 -0.5068 22 6 -6.8267 -4.5560 -1.1825 23 16 -5.0545 -4.3256 -1.5131 24 7 -0.0291 -2.4352 0.1345 25 1 -0.4851 0.8401 0.0004 26 1 3.1015 -3.6352 0.2688 27 1 1.8459 -5.7620 0.5045 28 1 -0.6350 -5.6924 0.5060 29 1 -2.5675 -2.6774 0.4319 30 1 -4.3231 -6.1770 1.6069 31 1 -4.5444 -6.7502 -0.0618 32 1 -6.6272 -6.8239 1.3962 33 1 -6.5907 -5.0474 1.4078 34 1 -6.6260 -6.7004 -1.1443 35 1 -8.0967 -6.0867 -0.3555 36 1 -7.3800 -4.5281 -2.1213 37 1 -7.1814 -3.7633 -0.5237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:15 Heat of formation + Delta-G solvation = -2.457545 kcal Electronic energy + Delta-G solvation = -20622.239753 eV Core-core repulsion = 17490.471091 eV Total energy + Delta-G solvation = -3131.768662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96656 -37.89078 -36.68951 -34.31991 -33.30177 -31.90475 -30.42463 -29.33218 -27.69724 -25.50910 -23.97397 -21.81596 -21.56463 -20.84669 -19.86703 -17.65872 -17.46793 -16.75169 -16.19032 -15.28513 -15.00776 -14.78352 -14.59198 -14.27110 -14.03188 -13.71545 -13.46884 -13.20013 -12.85678 -12.80093 -12.20165 -11.99172 -11.77760 -11.63227 -11.26931 -11.14620 -11.13213 -10.96342 -10.69276 -10.64728 -10.13384 -9.87310 -9.81452 -9.23440 -8.99501 -8.05766 -7.75080 -7.70237 -7.13214 -6.43122 -4.51532 1.28832 2.29808 2.59882 2.91410 3.09013 3.12146 3.22629 3.42423 3.46751 3.94948 4.39162 4.48936 4.63539 4.69414 4.77160 4.93590 5.01337 5.16371 5.32986 5.40811 5.58505 5.73583 5.74080 5.86349 5.88720 6.10336 6.15315 6.39921 6.74558 6.77315 6.81645 7.13086 7.44674 7.48232 7.82178 7.86604 8.10140 8.26447 8.58529 8.69871 8.94857 10.02714 10.30412 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.003996 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.712880 B = 7005.241872 C = 7909.603562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.435 4.435 8 H 0.086 0.914 9 C 0.279 3.721 10 C -0.287 4.287 11 C -0.049 4.049 12 C -0.313 4.313 13 C 0.356 3.644 14 N -0.637 5.637 15 C 0.533 3.467 16 O -0.504 6.504 17 C -0.076 4.076 18 H 0.106 0.894 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.090 4.090 23 S -0.214 6.214 24 N -0.505 5.505 25 H 0.271 0.729 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.409 0.591 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 -5.696 1.799 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.152 3.848 10 C -0.309 4.309 11 C -0.074 4.074 12 C -0.338 4.338 13 C 0.122 3.878 14 N -0.282 5.282 15 C 0.316 3.684 16 O -0.379 6.379 17 C -0.208 4.208 18 H 0.124 0.876 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.239 4.239 23 S 0.013 5.987 24 N -0.224 5.224 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.148 0.852 29 H 0.244 0.756 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.970 -5.227 0.521 14.925 hybrid contribution -0.038 0.293 1.277 1.311 sum -14.008 -4.934 1.798 14.960 Atomic orbital electron populations 1.70117 1.07243 1.27602 1.29379 1.26037 0.94871 1.01029 0.93397 0.86321 0.80615 0.80906 0.79018 1.19527 1.20138 1.18489 1.19569 0.94668 0.89346 1.43099 0.89630 1.18189 0.86335 0.92084 0.88170 1.21730 0.98826 0.93731 1.16662 1.20802 0.93650 0.96615 0.96319 1.21571 0.94656 0.97840 1.19727 1.18472 0.82655 0.91456 0.95238 1.43164 1.05731 1.11685 1.67577 1.19484 0.87344 0.83805 0.77744 1.90629 1.70199 1.32245 1.44823 1.23333 0.95716 1.03138 0.98613 0.87569 1.21614 0.95248 0.94836 1.02819 1.21544 0.94682 1.02993 0.97346 1.21737 1.01083 0.96481 0.96888 1.23547 0.94876 1.00547 1.04913 1.87405 1.04577 1.92930 1.13825 1.68045 1.08463 1.24600 1.21261 0.91778 0.88159 0.88265 0.85248 0.75558 0.90361 0.89206 0.90617 0.91653 0.90327 0.90821 0.87518 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.88 11.49 55.55 0.64 -18.24 16 2 C 0.07 1.81 5.49 -17.35 -0.10 1.71 16 3 Si 0.91 18.51 29.56 -169.99 -5.03 13.49 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.43 -11.68 9.13 -37.74 -0.34 -12.02 16 8 H 0.09 2.15 7.86 -52.48 -0.41 1.74 16 9 C 0.28 7.75 6.54 -85.00 -0.56 7.19 16 10 C -0.29 -7.27 9.83 -38.66 -0.38 -7.65 16 11 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 12 C -0.31 -7.74 8.83 -38.90 -0.34 -8.09 16 13 C 0.36 8.98 7.51 -154.97 -1.16 7.81 16 14 N -0.64 -13.19 5.41 -11.40 -0.06 -13.25 16 15 C 0.53 9.94 6.69 -10.98 -0.07 9.87 16 16 O -0.50 -10.90 13.14 5.56 0.07 -10.83 16 17 C -0.08 -1.04 2.90 -27.84 -0.08 -1.12 16 18 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 19 C -0.11 -1.22 4.65 -26.90 -0.13 -1.35 16 20 C -0.13 -1.07 5.61 -27.16 -0.15 -1.22 16 21 C -0.12 -0.97 5.75 -26.90 -0.15 -1.12 16 22 C -0.09 -0.81 6.45 37.21 0.24 -0.57 16 23 S -0.21 -2.92 21.68 -107.50 -2.33 -5.25 16 24 N -0.51 -13.96 7.92 -10.26 -0.08 -14.04 16 25 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 26 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 27 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 28 H 0.13 3.13 5.34 -52.50 -0.28 2.85 16 29 H 0.41 7.70 8.82 -40.82 -0.36 7.34 16 30 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.09 1.16 7.86 -51.93 -0.41 0.75 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.35 319.34 -10.42 -41.77 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.81 Total: 9.68 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -3.63 Total: -8.13 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.50 Total: -45.54 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.33 Total: -5.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.35 -10.42 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.310 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds