Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47731 * 274.99184 * 3 2 1 5 5 H 1.48500 * 109.47236 * 34.99364 * 3 2 1 6 6 H 1.48505 * 109.46880 * 154.98874 * 3 2 1 7 7 C 1.40019 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99903 * 173.64373 * 7 2 1 9 9 C 1.41341 * 120.00335 * 353.64474 * 7 2 1 10 10 C 1.40612 * 119.79163 * 186.38507 * 9 7 2 11 11 C 1.38300 * 119.12809 * 179.97438 * 10 9 7 12 12 C 1.38689 * 118.66993 * 359.75070 * 11 10 9 13 13 C 1.39632 * 119.49661 * 0.47963 * 12 11 10 14 14 N 1.39270 * 119.57270 * 179.79000 * 13 12 11 15 15 C 1.34778 * 120.00210 * 341.09423 * 14 13 12 16 16 O 1.21271 * 119.99690 * 354.40746 * 15 14 13 17 17 C 1.50703 * 120.00067 * 174.40163 * 15 14 13 18 18 H 1.09005 * 109.67725 * 335.32699 * 17 15 14 19 19 C 1.53087 * 109.57721 * 214.99897 * 17 15 14 20 20 C 1.52580 * 109.95735 * 177.16884 * 19 17 15 21 21 C 1.52580 * 110.72536 * 70.67819 * 20 19 17 22 22 C 1.53092 * 109.95388 * 289.32320 * 21 20 19 23 23 S 1.81749 * 108.84237 * 63.02885 * 22 21 20 24 24 N 1.31924 * 120.84809 * 359.50507 * 13 12 11 25 25 H 0.97006 * 120.00497 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43094 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66344 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.25541 * 180.26267 * 12 11 10 29 29 H 0.97002 * 120.00198 * 161.09632 * 14 13 12 30 30 H 1.09007 * 109.38870 * 57.02429 * 19 17 15 31 31 H 1.08996 * 109.39759 * 297.32130 * 19 17 15 32 32 H 1.09008 * 109.22941 * 190.99785 * 20 19 17 33 33 H 1.09000 * 109.22901 * 310.35597 * 20 19 17 34 34 H 1.09000 * 109.39247 * 49.47704 * 21 20 19 35 35 H 1.08999 * 109.39214 * 169.17740 * 21 20 19 36 36 H 1.09007 * 109.57871 * 182.83104 * 22 21 20 37 37 H 1.08996 * 109.58345 * 303.21692 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3833 2.1075 -1.3947 5 1 1.4955 2.6199 0.8029 6 1 3.5876 1.4121 0.5920 7 6 2.0076 -1.2126 -0.0005 8 1 3.0826 -1.2154 -0.1041 9 6 1.3075 -2.4330 0.1344 10 6 2.0215 -3.6369 0.2686 11 6 1.3226 -4.8230 0.4003 12 6 -0.0637 -4.7820 0.4005 13 6 -0.7152 -3.5551 0.2588 14 7 -2.1072 -3.5126 0.2544 15 6 -2.8149 -4.6319 0.0035 16 8 -2.2427 -5.6517 -0.3179 17 6 -4.3171 -4.6161 0.1225 18 1 -4.6228 -3.8246 0.8068 19 6 -4.8040 -5.9678 0.6513 20 6 -6.3176 -5.9379 0.8417 21 6 -7.0311 -5.9145 -0.5068 22 6 -6.8267 -4.5560 -1.1825 23 16 -5.0545 -4.3256 -1.5131 24 7 -0.0291 -2.4352 0.1345 25 1 -0.4851 0.8401 0.0004 26 1 3.1015 -3.6352 0.2688 27 1 1.8459 -5.7620 0.5045 28 1 -0.6350 -5.6924 0.5060 29 1 -2.5675 -2.6774 0.4319 30 1 -4.3231 -6.1770 1.6069 31 1 -4.5444 -6.7502 -0.0618 32 1 -6.6272 -6.8239 1.3962 33 1 -6.5907 -5.0474 1.4078 34 1 -6.6260 -6.7004 -1.1443 35 1 -8.0967 -6.0867 -0.3555 36 1 -7.3800 -4.5281 -2.1213 37 1 -7.1814 -3.7633 -0.5237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -20.692752 kcal Electronic energy + Delta-G solvation = -20623.030491 eV Core-core repulsion = 17490.471091 eV Total energy + Delta-G solvation = -3132.559400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59353 -39.67498 -37.58158 -36.08453 -35.15800 -32.94120 -32.37324 -31.07452 -28.73227 -27.38936 -25.08738 -23.57527 -23.23582 -21.65062 -21.49998 -19.41957 -19.00496 -17.99282 -17.91367 -16.67761 -16.50960 -16.23079 -16.06374 -15.74223 -15.18410 -15.02215 -14.67635 -14.53564 -14.33699 -14.02404 -13.80753 -13.62832 -12.96659 -12.90562 -12.68675 -12.61914 -12.55095 -12.40013 -11.87046 -11.84988 -11.64923 -11.55300 -11.08145 -10.83799 -10.55330 -10.02300 -9.67993 -9.04989 -8.81143 -8.33418 -6.53363 0.14226 0.79940 1.08319 1.42464 1.42826 1.52082 1.57829 1.87105 1.93271 2.23881 2.85252 3.35433 3.54139 3.82293 3.87956 3.89039 4.05415 4.12980 4.30840 4.40701 4.58819 4.62943 4.70685 4.84623 4.88576 4.91115 4.92481 5.01035 5.09774 5.13854 5.22125 5.35560 5.57728 5.61115 5.88915 6.01436 6.21968 6.41283 6.74534 6.88133 7.07561 8.05963 8.43298 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.003996 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.712880 B = 7005.241872 C = 7909.603562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.093 0.907 9 C 0.244 3.756 10 C -0.305 4.305 11 C -0.048 4.048 12 C -0.327 4.327 13 C 0.345 3.655 14 N -0.638 5.638 15 C 0.532 3.468 16 O -0.537 6.537 17 C -0.059 4.059 18 H 0.129 0.871 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.070 4.070 23 S -0.283 6.283 24 N -0.532 5.532 25 H 0.280 0.720 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.415 0.585 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.962 -5.222 2.424 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.111 0.889 9 C 0.118 3.882 10 C -0.328 4.328 11 C -0.072 4.072 12 C -0.352 4.352 13 C 0.110 3.890 14 N -0.283 5.283 15 C 0.318 3.682 16 O -0.413 6.413 17 C -0.190 4.190 18 H 0.147 0.853 19 C -0.143 4.143 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.218 4.218 23 S -0.057 6.057 24 N -0.252 5.252 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.252 0.748 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.735 -4.777 1.150 16.485 hybrid contribution 0.407 0.057 1.045 1.123 sum -15.328 -4.720 2.195 16.188 Atomic orbital electron populations 1.70196 1.08888 1.29189 1.29266 1.26982 0.95767 1.04486 0.92352 0.85090 0.79138 0.75613 0.79215 1.18948 1.19096 1.17877 1.19969 0.95303 0.90254 1.44166 0.88914 1.18721 0.87073 0.93486 0.88950 1.21919 0.99673 0.93651 1.17526 1.21177 0.93567 0.97628 0.94839 1.21801 0.95322 0.97926 1.20171 1.18868 0.84510 0.91249 0.94415 1.43249 1.04272 1.12872 1.67863 1.20409 0.89431 0.82467 0.75921 1.90589 1.71545 1.33215 1.46001 1.23254 0.91423 1.05356 0.99015 0.85260 1.21642 0.97998 0.92742 1.01922 1.21541 0.91713 1.04591 0.98088 1.21749 1.02783 0.95284 0.96156 1.23702 0.89879 1.01916 1.06283 1.87645 1.10044 1.93237 1.14817 1.68076 1.08807 1.25685 1.22624 0.90933 0.86656 0.84964 0.84854 0.74774 0.90424 0.91175 0.88786 0.90247 0.91424 0.87643 0.85993 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.02 11.49 21.84 0.25 -39.77 16 2 C 0.03 1.33 5.49 85.29 0.47 1.79 16 3 Si 0.99 37.81 29.56 68.60 2.03 39.84 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.47 -25.50 9.13 23.47 0.21 -25.29 16 8 H 0.09 4.73 7.86 -2.91 -0.02 4.71 16 9 C 0.24 13.97 6.54 40.21 0.26 14.23 16 10 C -0.31 -15.77 9.83 22.86 0.22 -15.54 16 11 C -0.05 -2.30 10.15 22.39 0.23 -2.08 16 12 C -0.33 -16.56 8.83 22.71 0.20 -16.36 16 13 C 0.34 17.92 7.51 133.23 1.00 18.92 16 14 N -0.64 -27.11 5.41 -308.38 -1.67 -28.78 16 15 C 0.53 20.21 6.69 87.66 0.59 20.79 16 16 O -0.54 -23.86 13.14 -3.00 -0.04 -23.90 16 17 C -0.06 -1.58 2.90 29.88 0.09 -1.49 16 18 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 19 C -0.10 -2.27 4.65 30.48 0.14 -2.13 16 20 C -0.12 -1.64 5.61 30.32 0.17 -1.47 16 21 C -0.12 -1.49 5.75 30.49 0.18 -1.32 16 22 C -0.07 -1.05 6.45 72.01 0.46 -0.58 16 23 S -0.28 -7.58 21.68 -56.49 -1.22 -8.80 16 24 N -0.53 -30.40 7.92 -186.37 -1.48 -31.88 16 25 H 0.28 13.32 8.29 -92.70 -0.77 12.55 16 26 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 27 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 28 H 0.13 6.59 5.34 -3.14 -0.02 6.57 16 29 H 0.42 16.09 8.82 -92.71 -0.82 15.28 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.07 1.81 7.86 -2.39 -0.02 1.79 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 34 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.65 319.34 2.37 -68.29 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.27 Total: 35.52 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.22 Total: -10.51 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -2.89 Total: -100.43 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.22 Total: -8.80 kcal Total: -70.65 2.37 -68.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.594 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds