Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86794 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47234 * 274.98960 * 3 2 1 5 5 H 1.48501 * 109.47263 * 34.99025 * 3 2 1 6 6 H 1.48503 * 109.47403 * 154.98800 * 3 2 1 7 7 C 1.40028 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99582 * 173.65112 * 7 2 1 9 9 C 1.41331 * 120.00383 * 353.65233 * 7 2 1 10 10 C 1.40610 * 119.79137 * 186.34518 * 9 7 2 11 11 C 1.38307 * 119.13299 * 179.97438 * 10 9 7 12 12 C 1.38702 * 118.66538 * 359.74472 * 11 10 9 13 13 C 1.39637 * 119.49538 * 0.52130 * 12 11 10 14 14 N 1.39271 * 119.56994 * 179.74680 * 13 12 11 15 15 C 1.34768 * 120.00483 * 341.09277 * 14 13 12 16 16 O 1.21281 * 119.99911 * 354.39909 * 15 14 13 17 17 C 1.50698 * 120.00494 * 174.40550 * 15 14 13 18 18 C 1.52579 * 109.23164 * 180.02562 * 17 15 14 19 19 C 1.53092 * 109.95872 * 190.99231 * 18 17 15 20 20 S 1.81745 * 108.84072 * 296.97513 * 19 18 17 21 21 C 1.81743 * 102.22272 * 53.26378 * 20 19 18 22 22 C 1.52585 * 109.22013 * 301.23611 * 17 15 14 23 23 N 1.31929 * 120.85213 * 359.46528 * 13 12 11 24 24 H 0.96995 * 119.99855 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43448 * 359.97301 * 10 9 7 26 26 H 1.07998 * 120.66753 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25172 * 180.24190 * 12 11 10 28 28 H 0.97005 * 119.99248 * 161.09593 * 14 13 12 29 29 H 1.08997 * 109.18867 * 60.61261 * 17 15 14 30 30 H 1.09005 * 109.38615 * 311.14386 * 18 17 15 31 31 H 1.08999 * 109.39064 * 70.84222 * 18 17 15 32 32 H 1.09007 * 109.57474 * 56.78116 * 19 18 17 33 33 H 1.09003 * 109.57487 * 177.16345 * 19 18 17 34 34 H 1.09003 * 109.57785 * 186.92417 * 21 20 19 35 35 H 1.09009 * 109.57600 * 66.53927 * 21 20 19 36 36 H 1.09002 * 109.38993 * 289.14818 * 22 17 15 37 37 H 1.08994 * 109.39048 * 48.95229 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4956 2.6199 0.8029 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2155 -0.1040 9 6 1.3074 -2.4330 0.1342 10 6 2.0214 -3.6370 0.2676 11 6 1.3225 -4.8232 0.3991 12 6 -0.0639 -4.7820 0.4002 13 6 -0.7154 -3.5551 0.2585 14 7 -2.1074 -3.5125 0.2540 15 6 -2.8151 -4.6317 0.0030 16 8 -2.2429 -5.6515 -0.3186 17 6 -4.3173 -4.6159 0.1218 18 6 -4.8625 -6.0010 -0.2134 19 6 -6.3846 -5.9406 -0.3660 20 16 -7.1149 -5.4509 1.2246 21 6 -6.2068 -3.9248 1.6114 22 6 -4.7047 -4.2127 1.5416 23 7 -0.0292 -2.4351 0.1343 24 1 -0.4850 0.8400 0.0004 25 1 3.1014 -3.6355 0.2672 26 1 1.8458 -5.7622 0.5035 27 1 -0.6352 -5.6925 0.5053 28 1 -2.5676 -2.6772 0.4316 29 1 -4.7247 -3.8895 -0.5813 30 1 -4.4187 -6.3485 -1.1464 31 1 -4.6064 -6.6943 0.5877 32 1 -6.6463 -5.2076 -1.1292 33 1 -6.7619 -6.9217 -0.6546 34 1 -6.4680 -3.5887 2.6148 35 1 -6.4650 -3.1525 0.8867 36 1 -4.4589 -5.0233 2.2277 37 1 -4.1527 -3.3172 1.8268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -5.242530 kcal Electronic energy + Delta-G solvation = -20774.451956 eV Core-core repulsion = 17642.562528 eV Total energy + Delta-G solvation = -3131.889428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22830 -38.04076 -36.25485 -34.40339 -33.31936 -31.69257 -30.45207 -29.55704 -27.83344 -25.49273 -23.27753 -22.72691 -21.65358 -20.89561 -19.61353 -17.58259 -17.42331 -16.99617 -16.16070 -15.26358 -14.92086 -14.75550 -14.50272 -14.38607 -13.96823 -13.64391 -13.37237 -13.08870 -13.00727 -12.84488 -12.43998 -12.25367 -11.99918 -11.64143 -11.31328 -11.23359 -11.08595 -10.85647 -10.72188 -10.58289 -10.16738 -9.95947 -9.84088 -9.26324 -8.98764 -8.09278 -7.87847 -7.74416 -7.16225 -6.47784 -4.55504 1.57363 2.32706 2.40670 2.85027 3.05656 3.08841 3.17992 3.30846 3.43828 3.91154 4.43910 4.51124 4.58813 4.73104 4.73993 4.96971 5.06319 5.21331 5.28133 5.40630 5.47137 5.68959 5.76216 5.85203 5.94855 6.09045 6.13043 6.37106 6.72027 6.75007 6.79250 7.09031 7.42195 7.45659 7.79996 7.84061 8.07557 8.23648 8.58292 8.66403 8.91526 9.98774 10.25840 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.003813 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.130047 B = 7341.625823 C = 8277.768669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.435 4.435 8 H 0.085 0.915 9 C 0.279 3.721 10 C -0.287 4.287 11 C -0.050 4.050 12 C -0.313 4.313 13 C 0.355 3.645 14 N -0.644 5.644 15 C 0.518 3.482 16 O -0.518 6.518 17 C -0.111 4.111 18 C -0.103 4.103 19 C -0.078 4.078 20 S -0.276 6.276 21 C -0.077 4.077 22 C -0.116 4.116 23 N -0.507 5.507 24 H 0.271 0.729 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.407 0.593 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 -4.140 1.457 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.152 3.848 10 C -0.310 4.310 11 C -0.074 4.074 12 C -0.338 4.338 13 C 0.121 3.879 14 N -0.288 5.288 15 C 0.303 3.697 16 O -0.393 6.393 17 C -0.133 4.133 18 C -0.142 4.142 19 C -0.226 4.226 20 S -0.050 6.050 21 C -0.225 4.225 22 C -0.156 4.156 23 N -0.225 5.225 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.148 0.852 28 H 0.242 0.758 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.262 -4.447 1.738 14.096 hybrid contribution 1.518 1.121 -0.576 1.973 sum -11.744 -3.326 1.162 12.261 Atomic orbital electron populations 1.70116 1.07264 1.27546 1.29614 1.26034 0.94875 1.01034 0.93325 0.86320 0.80661 0.80864 0.79016 1.19539 1.20120 1.18460 1.19571 0.94682 0.89357 1.43100 0.89645 1.18186 0.86386 0.92063 0.88154 1.21730 0.98830 0.93732 1.16705 1.20818 0.93710 0.96608 0.96302 1.21593 0.94616 0.97918 1.19635 1.18514 0.82897 0.91381 0.95153 1.43222 1.05613 1.12006 1.67970 1.20326 0.88941 0.83358 0.77042 1.90621 1.70940 1.32302 1.45449 1.21300 0.92901 1.00064 0.99054 1.21534 0.92436 0.95704 1.04566 1.23490 0.97979 1.05248 0.95886 1.86874 1.55052 1.33426 1.29629 1.23458 0.96590 0.96588 1.05849 1.21751 0.94574 1.03533 0.95694 1.68061 1.08461 1.24632 1.21381 0.91839 0.88187 0.88300 0.85217 0.75783 0.88389 0.89392 0.89832 0.89727 0.87462 0.87352 0.89478 0.89701 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.47 11.49 55.55 0.64 -17.83 16 2 C 0.07 1.78 5.49 -17.34 -0.10 1.69 16 3 Si 0.91 18.18 29.56 -169.99 -5.03 13.15 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.44 -11.50 9.13 -37.74 -0.34 -11.84 16 8 H 0.09 2.12 7.85 -52.49 -0.41 1.70 16 9 C 0.28 7.60 6.54 -85.00 -0.56 7.05 16 10 C -0.29 -7.17 9.83 -38.66 -0.38 -7.55 16 11 C -0.05 -1.17 10.15 -39.38 -0.40 -1.57 16 12 C -0.31 -7.56 8.83 -38.89 -0.34 -7.91 16 13 C 0.35 8.64 7.51 -154.97 -1.16 7.48 16 14 N -0.64 -12.43 5.14 -11.40 -0.06 -12.49 16 15 C 0.52 8.88 6.98 -10.99 -0.08 8.80 16 16 O -0.52 -10.57 12.56 5.56 0.07 -10.50 16 17 C -0.11 -1.33 2.26 -92.20 -0.21 -1.54 16 18 C -0.10 -1.15 4.50 -26.90 -0.12 -1.27 16 19 C -0.08 -0.71 6.45 37.20 0.24 -0.47 16 20 S -0.28 -2.84 22.33 -107.50 -2.40 -5.24 16 21 C -0.08 -0.68 6.46 37.21 0.24 -0.44 16 22 C -0.12 -1.22 5.02 -26.89 -0.14 -1.35 16 23 N -0.51 -13.62 7.92 -10.26 -0.08 -13.71 16 24 H 0.27 6.23 8.29 -40.82 -0.34 5.89 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.13 3.08 5.33 -52.50 -0.28 2.80 16 28 H 0.41 7.01 8.24 -40.82 -0.34 6.68 16 29 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 31 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 37 H 0.08 0.88 7.29 -51.93 -0.38 0.50 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -30.50 317.06 -10.16 -40.66 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.73 Total: 10.12 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.34 Total: -8.93 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.50 Total: -44.03 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.40 Total: -5.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.50 -10.16 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.415 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds