Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86794 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47234 * 274.98960 * 3 2 1 5 5 H 1.48501 * 109.47263 * 34.99025 * 3 2 1 6 6 H 1.48503 * 109.47403 * 154.98800 * 3 2 1 7 7 C 1.40028 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99582 * 173.65112 * 7 2 1 9 9 C 1.41331 * 120.00383 * 353.65233 * 7 2 1 10 10 C 1.40610 * 119.79137 * 186.34518 * 9 7 2 11 11 C 1.38307 * 119.13299 * 179.97438 * 10 9 7 12 12 C 1.38702 * 118.66538 * 359.74472 * 11 10 9 13 13 C 1.39637 * 119.49538 * 0.52130 * 12 11 10 14 14 N 1.39271 * 119.56994 * 179.74680 * 13 12 11 15 15 C 1.34768 * 120.00483 * 341.09277 * 14 13 12 16 16 O 1.21281 * 119.99911 * 354.39909 * 15 14 13 17 17 C 1.50698 * 120.00494 * 174.40550 * 15 14 13 18 18 C 1.52579 * 109.23164 * 180.02562 * 17 15 14 19 19 C 1.53092 * 109.95872 * 190.99231 * 18 17 15 20 20 S 1.81745 * 108.84072 * 296.97513 * 19 18 17 21 21 C 1.81743 * 102.22272 * 53.26378 * 20 19 18 22 22 C 1.52585 * 109.22013 * 301.23611 * 17 15 14 23 23 N 1.31929 * 120.85213 * 359.46528 * 13 12 11 24 24 H 0.96995 * 119.99855 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43448 * 359.97301 * 10 9 7 26 26 H 1.07998 * 120.66753 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25172 * 180.24190 * 12 11 10 28 28 H 0.97005 * 119.99248 * 161.09593 * 14 13 12 29 29 H 1.08997 * 109.18867 * 60.61261 * 17 15 14 30 30 H 1.09005 * 109.38615 * 311.14386 * 18 17 15 31 31 H 1.08999 * 109.39064 * 70.84222 * 18 17 15 32 32 H 1.09007 * 109.57474 * 56.78116 * 19 18 17 33 33 H 1.09003 * 109.57487 * 177.16345 * 19 18 17 34 34 H 1.09003 * 109.57785 * 186.92417 * 21 20 19 35 35 H 1.09009 * 109.57600 * 66.53927 * 21 20 19 36 36 H 1.09002 * 109.38993 * 289.14818 * 22 17 15 37 37 H 1.08994 * 109.39048 * 48.95229 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4956 2.6199 0.8029 6 1 3.5877 1.4121 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2155 -0.1040 9 6 1.3074 -2.4330 0.1342 10 6 2.0214 -3.6370 0.2676 11 6 1.3225 -4.8232 0.3991 12 6 -0.0639 -4.7820 0.4002 13 6 -0.7154 -3.5551 0.2585 14 7 -2.1074 -3.5125 0.2540 15 6 -2.8151 -4.6317 0.0030 16 8 -2.2429 -5.6515 -0.3186 17 6 -4.3173 -4.6159 0.1218 18 6 -4.8625 -6.0010 -0.2134 19 6 -6.3846 -5.9406 -0.3660 20 16 -7.1149 -5.4509 1.2246 21 6 -6.2068 -3.9248 1.6114 22 6 -4.7047 -4.2127 1.5416 23 7 -0.0292 -2.4351 0.1343 24 1 -0.4850 0.8400 0.0004 25 1 3.1014 -3.6355 0.2672 26 1 1.8458 -5.7622 0.5035 27 1 -0.6352 -5.6925 0.5053 28 1 -2.5676 -2.6772 0.4316 29 1 -4.7247 -3.8895 -0.5813 30 1 -4.4187 -6.3485 -1.1464 31 1 -4.6064 -6.6943 0.5877 32 1 -6.6463 -5.2076 -1.1292 33 1 -6.7619 -6.9217 -0.6546 34 1 -6.4680 -3.5887 2.6148 35 1 -6.4650 -3.1525 0.8867 36 1 -4.4589 -5.0233 2.2277 37 1 -4.1527 -3.3172 1.8268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -22.246297 kcal Electronic energy + Delta-G solvation = -20775.189295 eV Core-core repulsion = 17642.562528 eV Total energy + Delta-G solvation = -3132.626767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70869 -39.77030 -37.38222 -36.08507 -35.12295 -32.56913 -32.31396 -31.26978 -28.98081 -27.34674 -24.34451 -23.92427 -23.52890 -22.29256 -21.00809 -19.36358 -18.85968 -17.96218 -17.77781 -16.81144 -16.53652 -16.21076 -15.81674 -15.60066 -15.32963 -14.81595 -14.68949 -14.49131 -14.09965 -13.88005 -13.85287 -13.69835 -13.42320 -12.93711 -12.87304 -12.64932 -12.58132 -12.45205 -12.08538 -11.86218 -11.60552 -11.43362 -11.06334 -10.73841 -10.52421 -10.00587 -9.67189 -9.01734 -8.67299 -8.33654 -6.52712 0.68733 0.82858 1.07029 1.42868 1.50106 1.56827 1.58458 1.71606 2.00697 2.23869 2.85214 3.37689 3.57854 3.67393 3.88896 3.92671 4.09111 4.22890 4.31102 4.34581 4.46433 4.57545 4.62011 4.76475 4.84159 4.85824 4.89598 4.92339 4.96308 5.05950 5.18857 5.23232 5.59612 5.64179 5.90825 6.04369 6.24183 6.47420 6.75674 6.91245 7.16891 8.07165 8.43027 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.003813 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.130047 B = 7341.625823 C = 8277.768669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.308 4.308 11 C -0.049 4.049 12 C -0.328 4.328 13 C 0.346 3.654 14 N -0.641 5.641 15 C 0.517 3.483 16 O -0.551 6.551 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.066 4.066 20 S -0.304 6.304 21 C -0.066 4.066 22 C -0.112 4.112 23 N -0.532 5.532 24 H 0.280 0.720 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.416 0.584 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.259 -3.117 1.421 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.119 3.881 10 C -0.330 4.330 11 C -0.073 4.073 12 C -0.353 4.353 13 C 0.111 3.889 14 N -0.286 5.286 15 C 0.306 3.694 16 O -0.428 6.428 17 C -0.119 4.119 18 C -0.138 4.138 19 C -0.214 4.214 20 S -0.078 6.078 21 C -0.214 4.214 22 C -0.151 4.151 23 N -0.251 5.251 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.253 0.747 29 H 0.140 0.860 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.354 -3.446 1.708 14.861 hybrid contribution 1.802 0.714 -0.570 2.021 sum -12.552 -2.732 1.138 12.896 Atomic orbital electron populations 1.70177 1.08766 1.29158 1.29301 1.26932 0.95788 1.04312 0.92363 0.85115 0.79129 0.75760 0.79220 1.18918 1.19074 1.18100 1.19951 0.95250 0.90324 1.44260 0.89129 1.18693 0.87219 0.93338 0.88897 1.21899 0.99580 0.93739 1.17831 1.21177 0.93750 0.97514 0.94905 1.21821 0.95186 0.98121 1.20166 1.18905 0.84942 0.91005 0.94085 1.43285 1.03874 1.13320 1.68167 1.21315 0.90917 0.81979 0.75213 1.90590 1.72192 1.33312 1.46699 1.21325 0.88421 1.01398 1.00768 1.21482 0.94037 0.94733 1.03590 1.23460 0.95869 1.06550 0.95533 1.87038 1.55481 1.34620 1.30693 1.23462 0.94632 0.96087 1.07215 1.21709 0.96019 1.03200 0.94187 1.68099 1.08657 1.25697 1.22693 0.90905 0.86927 0.85259 0.84903 0.74692 0.86037 0.90295 0.91108 0.88126 0.86236 0.86071 0.87822 0.90734 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.49 11.49 21.84 0.25 -38.24 16 2 C 0.03 1.39 5.49 85.29 0.47 1.86 16 3 Si 0.99 36.83 29.56 68.60 2.03 38.86 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.47 -25.02 9.13 23.47 0.21 -24.81 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.24 13.68 6.54 40.20 0.26 13.94 16 10 C -0.31 -15.64 9.83 22.87 0.22 -15.41 16 11 C -0.05 -2.32 10.15 22.40 0.23 -2.09 16 12 C -0.33 -16.08 8.83 22.72 0.20 -15.88 16 13 C 0.35 17.13 7.51 133.23 1.00 18.13 16 14 N -0.64 -24.80 5.14 -308.38 -1.58 -26.39 16 15 C 0.52 17.57 6.98 87.66 0.61 18.19 16 16 O -0.55 -22.65 12.56 -3.03 -0.04 -22.68 16 17 C -0.10 -2.18 2.26 -11.82 -0.03 -2.21 16 18 C -0.10 -2.08 4.50 30.49 0.14 -1.94 16 19 C -0.07 -1.06 6.45 72.01 0.46 -0.59 16 20 S -0.30 -5.63 22.33 -56.49 -1.26 -6.89 16 21 C -0.07 -1.01 6.46 72.02 0.46 -0.54 16 22 C -0.11 -2.15 5.02 30.49 0.15 -2.00 16 23 N -0.53 -29.22 7.92 -186.36 -1.48 -30.69 16 24 H 0.28 12.78 8.29 -92.71 -0.77 12.01 16 25 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 26 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 27 H 0.13 6.39 5.33 -3.14 -0.02 6.37 16 28 H 0.42 14.24 8.24 -92.70 -0.76 13.48 16 29 H 0.12 2.21 8.08 -2.39 -0.02 2.19 16 30 H 0.08 1.83 7.69 -2.38 -0.02 1.81 16 31 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 32 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.09 1.66 7.29 -2.39 -0.02 1.64 16 Total: -1.00 -66.87 317.06 2.65 -64.22 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.33 Total: 35.18 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.40 Total: -13.36 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -2.81 Total: -95.32 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.04 Total: -22.68 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.26 Total: -6.89 kcal Total: -66.87 2.65 -64.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.970 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds