Wall clock time and date at job start Tue Mar 31 2020 07:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99923 * 2 1 4 4 C 1.50702 * 109.47110 * 270.00034 * 3 2 1 5 5 C 1.32825 * 124.72272 * 90.00286 * 4 3 2 6 6 C 1.44400 * 113.07203 * 180.28822 * 5 4 3 7 7 C 1.43201 * 123.45140 * 179.72571 * 6 5 4 8 8 N 6.67120 * 84.64036 * 308.62861 * 2 1 3 9 9 C 1.35955 * 113.09789 * 359.50679 * 6 5 4 10 10 S 1.70449 * 110.83078 * 0.47753 * 9 6 5 11 11 C 1.34776 * 120.00006 * 180.02562 * 2 1 3 12 12 O 1.21278 * 120.00227 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00095 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.47392 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47431 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47327 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00027 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00210 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47147 * 89.99610 * 20 18 16 22 22 H 1.48503 * 109.47307 * 209.99933 * 20 18 16 23 23 H 1.48507 * 109.47109 * 329.99950 * 20 18 16 24 24 H 1.08997 * 109.46915 * 89.99905 * 1 2 3 25 25 H 1.08996 * 109.46919 * 209.99904 * 1 2 3 26 26 H 1.09000 * 109.46740 * 330.00452 * 1 2 3 27 27 H 1.09003 * 109.46725 * 150.00389 * 3 2 1 28 28 H 1.08998 * 109.47086 * 29.99778 * 3 2 1 29 29 H 1.08002 * 123.46002 * 0.02562 * 5 4 3 30 30 H 1.08000 * 124.58289 * 180.19639 * 9 6 5 31 31 H 1.08999 * 109.46994 * 300.00615 * 13 11 2 32 32 H 1.09004 * 109.46878 * 59.99955 * 13 11 2 33 33 H 1.09006 * 109.46910 * 299.99936 * 14 13 11 34 34 H 1.08996 * 109.47325 * 59.99623 * 14 13 11 35 35 H 1.08999 * 109.46783 * 300.00170 * 15 14 13 36 36 H 1.09004 * 109.47050 * 59.99486 * 15 14 13 37 37 H 0.96999 * 119.99780 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6293 2.4681 -2.1341 6 6 2.1144 2.7251 -3.4697 7 6 1.4048 3.5176 -4.4284 8 7 0.8419 4.1464 -5.1888 9 6 3.3161 2.1415 -3.7222 10 16 3.8644 1.2705 -2.3635 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6147 -4.9602 -0.0012 16 6 2.5939 -6.1057 -0.0018 17 1 3.6557 -5.9083 -0.0013 18 6 2.1343 -7.4056 -0.0019 19 7 2.9889 -8.4052 -0.0020 20 14 0.2978 -7.7469 -0.0020 21 1 -0.1889 -7.8372 -1.4020 22 1 0.0326 -9.0295 0.6979 23 1 -0.4105 -6.6453 0.6981 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1500 1.1383 0.5138 28 1 1.6084 2.0284 0.5138 29 1 0.6943 2.8539 -1.7555 30 1 3.8489 2.2157 -4.6587 31 1 0.7591 -2.5302 0.8896 32 1 0.7584 -2.5298 -0.8903 33 1 3.0063 -3.5775 -0.8906 34 1 3.0063 -3.5775 0.8894 35 1 0.9877 -5.0182 0.8886 36 1 0.9882 -5.0177 -0.8914 37 1 2.6655 -9.3197 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887965164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:55 Heat of formation + Delta-G solvation = 15.421433 kcal Electronic energy + Delta-G solvation = -19755.248266 eV Core-core repulsion = 16624.254894 eV Total energy + Delta-G solvation = -3130.993372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98308 -38.50664 -36.48162 -35.50299 -34.38005 -32.27287 -31.43250 -28.61108 -27.50223 -26.00664 -25.10058 -23.35362 -20.88996 -20.08959 -19.04856 -18.37490 -17.21129 -16.85664 -16.69530 -16.16537 -15.76401 -14.72374 -14.39612 -14.19832 -14.09305 -13.85174 -13.46938 -13.28466 -13.15590 -12.96610 -12.80303 -12.64548 -12.50026 -12.34613 -12.10002 -11.83163 -11.63298 -11.06439 -10.96323 -10.79681 -10.03649 -9.87607 -9.71354 -9.59703 -9.24585 -9.12845 -8.91559 -8.72394 -8.51800 -6.01513 -3.99323 0.36793 1.16767 1.50106 1.59129 2.40768 2.72589 2.96957 3.18612 3.30819 3.38122 3.40402 3.73010 4.35328 4.46253 4.54970 4.66042 4.90287 4.97728 5.02483 5.19716 5.25132 5.31941 5.48374 5.49469 5.52134 5.57190 5.61264 5.83900 6.06208 6.27067 6.54120 6.66975 6.90600 7.19243 7.22979 7.37018 7.44306 7.81783 8.22502 8.58273 9.05279 9.60600 11.12174 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002999 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.929942 B = 9334.770080 C = 9349.486964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.184 3.816 4 C -0.216 4.216 5 C -0.090 4.090 6 C -0.062 4.062 7 C 0.278 3.722 8 N -0.425 5.425 9 C -0.207 4.207 10 S 0.266 5.734 11 C 0.514 3.486 12 O -0.527 6.527 13 C -0.140 4.140 14 C -0.087 4.087 15 C -0.014 4.014 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.064 3.936 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 24.215 -1.280 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C 0.060 3.940 4 C -0.335 4.335 5 C -0.121 4.121 6 C -0.081 4.081 7 C -0.039 4.039 8 N -0.102 5.102 9 C -0.349 4.349 10 S 0.534 5.466 11 C 0.304 3.696 12 O -0.402 6.402 13 C -0.180 4.180 14 C -0.125 4.125 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.168 0.832 30 H 0.192 0.808 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.052 24.087 -2.120 24.372 hybrid contribution -2.194 0.366 -0.306 2.245 sum -5.246 24.453 -2.426 25.127 Atomic orbital electron populations 1.21837 0.79143 1.03453 1.02090 1.48069 1.07130 1.05346 1.75230 1.19815 0.99235 0.85867 0.89111 1.24945 1.00344 1.05560 1.02692 1.20910 1.00607 0.99692 0.90906 1.16174 0.95317 1.04182 0.92445 1.25085 0.93155 0.92830 0.92812 1.81268 1.08838 1.10412 1.09646 1.25786 0.99747 1.02843 1.06504 1.83913 1.18872 1.44171 0.99604 1.21265 0.88360 0.85409 0.74561 1.90683 1.14016 1.87226 1.48285 1.21911 1.00410 0.92085 1.03569 1.21276 0.96576 0.92135 1.02541 1.19602 0.96335 0.93163 0.96056 1.21155 0.94636 0.89412 1.50445 0.90923 1.25054 0.97611 0.96272 0.94710 1.69923 1.34141 0.98964 1.51329 0.86768 0.86328 0.77667 0.78418 1.20360 1.21467 1.19042 0.92549 0.90277 0.91146 0.88387 0.88494 0.83170 0.80841 0.89315 0.89375 0.92073 0.92045 0.96715 0.97147 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.29 59.85 0.62 1.13 16 2 N -0.62 -6.03 2.86 -182.95 -0.52 -6.55 16 3 C 0.18 1.46 5.91 -5.19 -0.03 1.43 16 4 C -0.22 -1.77 6.03 -36.17 -0.22 -1.99 16 5 C -0.09 -0.66 10.20 -39.02 -0.40 -1.06 16 6 C -0.06 -0.52 5.84 -106.37 -0.62 -1.15 16 7 C 0.28 2.83 15.62 -22.47 -0.35 2.48 16 8 N -0.43 -5.27 18.54 41.84 0.78 -4.50 16 9 C -0.21 -1.59 10.78 29.91 0.32 -1.27 16 10 S 0.27 2.34 23.00 -107.50 -2.47 -0.14 16 11 C 0.51 7.06 7.67 -10.99 -0.08 6.98 16 12 O -0.53 -8.94 15.56 5.56 0.09 -8.85 16 13 C -0.14 -2.01 4.25 -27.89 -0.12 -2.13 16 14 C -0.09 -1.72 4.44 -26.73 -0.12 -1.84 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 16 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 20 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 26 H 0.07 0.30 7.89 -51.93 -0.41 -0.11 16 27 H 0.10 0.90 7.42 -51.93 -0.39 0.51 16 28 H 0.10 0.48 7.89 -51.93 -0.41 0.07 16 29 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 32 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 33 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 36 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -34.37 339.02 -7.27 -41.64 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.81 Total: -4.94 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.55 Total: -11.26 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.03 Total: -38.33 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.37 -7.27 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887965164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.063 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds