Wall clock time and date at job start Tue Mar 31 2020 07:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99923 * 2 1 4 4 C 1.50702 * 109.47110 * 270.00034 * 3 2 1 5 5 C 1.32825 * 124.72272 * 90.00286 * 4 3 2 6 6 C 1.44400 * 113.07203 * 180.28822 * 5 4 3 7 7 C 1.43201 * 123.45140 * 179.72571 * 6 5 4 8 8 N 6.67120 * 84.64036 * 308.62861 * 2 1 3 9 9 C 1.35955 * 113.09789 * 359.50679 * 6 5 4 10 10 S 1.70449 * 110.83078 * 0.47753 * 9 6 5 11 11 C 1.34776 * 120.00006 * 180.02562 * 2 1 3 12 12 O 1.21278 * 120.00227 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00095 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.47392 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47431 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47327 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00027 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00210 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47147 * 89.99610 * 20 18 16 22 22 H 1.48503 * 109.47307 * 209.99933 * 20 18 16 23 23 H 1.48507 * 109.47109 * 329.99950 * 20 18 16 24 24 H 1.08997 * 109.46915 * 89.99905 * 1 2 3 25 25 H 1.08996 * 109.46919 * 209.99904 * 1 2 3 26 26 H 1.09000 * 109.46740 * 330.00452 * 1 2 3 27 27 H 1.09003 * 109.46725 * 150.00389 * 3 2 1 28 28 H 1.08998 * 109.47086 * 29.99778 * 3 2 1 29 29 H 1.08002 * 123.46002 * 0.02562 * 5 4 3 30 30 H 1.08000 * 124.58289 * 180.19639 * 9 6 5 31 31 H 1.08999 * 109.46994 * 300.00615 * 13 11 2 32 32 H 1.09004 * 109.46878 * 59.99955 * 13 11 2 33 33 H 1.09006 * 109.46910 * 299.99936 * 14 13 11 34 34 H 1.08996 * 109.47325 * 59.99623 * 14 13 11 35 35 H 1.08999 * 109.46783 * 300.00170 * 15 14 13 36 36 H 1.09004 * 109.47050 * 59.99486 * 15 14 13 37 37 H 0.96999 * 119.99780 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6293 2.4681 -2.1341 6 6 2.1144 2.7251 -3.4697 7 6 1.4048 3.5176 -4.4284 8 7 0.8419 4.1464 -5.1888 9 6 3.3161 2.1415 -3.7222 10 16 3.8644 1.2705 -2.3635 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6147 -4.9602 -0.0012 16 6 2.5939 -6.1057 -0.0018 17 1 3.6557 -5.9083 -0.0013 18 6 2.1343 -7.4056 -0.0019 19 7 2.9889 -8.4052 -0.0020 20 14 0.2978 -7.7469 -0.0020 21 1 -0.1889 -7.8372 -1.4020 22 1 0.0326 -9.0295 0.6979 23 1 -0.4105 -6.6453 0.6981 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1500 1.1383 0.5138 28 1 1.6084 2.0284 0.5138 29 1 0.6943 2.8539 -1.7555 30 1 3.8489 2.2157 -4.6587 31 1 0.7591 -2.5302 0.8896 32 1 0.7584 -2.5298 -0.8903 33 1 3.0063 -3.5775 -0.8906 34 1 3.0063 -3.5775 0.8894 35 1 0.9877 -5.0182 0.8886 36 1 0.9882 -5.0177 -0.8914 37 1 2.6655 -9.3197 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887965164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:54 Heat of formation + Delta-G solvation = -5.841143 kcal Electronic energy + Delta-G solvation = -19756.170280 eV Core-core repulsion = 16624.254894 eV Total energy + Delta-G solvation = -3131.915386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91891 -39.22088 -37.32642 -36.36472 -36.05907 -34.13752 -32.31727 -30.13219 -28.14555 -26.93470 -25.94779 -24.82025 -22.10006 -21.29047 -20.00499 -19.03193 -18.80652 -17.90279 -17.77786 -17.08199 -16.71891 -16.19331 -15.67743 -15.15507 -15.00522 -14.76496 -14.55244 -14.41743 -14.19857 -14.02246 -13.78054 -13.65070 -13.36805 -13.20843 -13.14577 -12.98909 -12.67597 -12.51853 -12.37739 -11.75269 -11.71372 -11.62318 -11.44526 -11.27153 -10.75807 -10.72373 -9.92729 -9.67040 -9.42449 -8.25140 -6.30320 -0.27620 0.52628 0.86033 0.95945 1.40470 1.43653 1.55614 1.63162 1.73011 2.20427 2.41217 2.44868 3.00503 3.10221 3.74131 3.75733 4.09409 4.18001 4.27758 4.30156 4.40884 4.47778 4.66663 4.77035 4.83934 4.91116 4.96850 5.00132 5.01414 5.08658 5.13002 5.25352 5.57256 5.64262 5.64993 5.71336 6.33216 6.41187 6.42425 6.78824 7.26449 7.34156 8.92475 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002999 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.929942 B = 9334.770080 C = 9349.486964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.182 3.818 4 C -0.221 4.221 5 C -0.074 4.074 6 C -0.074 4.074 7 C 0.301 3.699 8 N -0.468 5.468 9 C -0.192 4.192 10 S 0.226 5.774 11 C 0.510 3.490 12 O -0.573 6.573 13 C -0.131 4.131 14 C -0.079 4.079 15 C -0.009 4.009 16 C -0.537 4.537 17 H 0.020 0.980 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.234 1.234 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.178 0.822 30 H 0.190 0.810 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 26.032 -0.875 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C 0.058 3.942 4 C -0.340 4.340 5 C -0.105 4.105 6 C -0.093 4.093 7 C -0.015 4.015 8 N -0.145 5.145 9 C -0.334 4.334 10 S 0.494 5.506 11 C 0.300 3.700 12 O -0.452 6.452 13 C -0.170 4.170 14 C -0.117 4.117 15 C -0.047 4.047 16 C -0.575 4.575 17 H 0.039 0.961 18 C -0.200 4.200 19 N -0.599 5.599 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.157 1.157 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.155 0.845 29 H 0.195 0.805 30 H 0.207 0.793 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.752 25.961 -1.711 26.879 hybrid contribution -0.915 -0.182 -0.431 1.027 sum -7.667 25.779 -2.142 26.980 Atomic orbital electron populations 1.22147 0.76700 1.05338 1.03172 1.48050 1.08589 1.04619 1.73240 1.20011 0.99194 0.85828 0.89157 1.24912 0.99948 1.06302 1.02793 1.21118 1.01036 0.98407 0.89901 1.16290 0.95583 1.04638 0.92816 1.25212 0.92213 0.91956 0.92147 1.81294 1.10312 1.11975 1.10920 1.25942 0.99390 1.01474 1.06571 1.84204 1.20474 1.44957 1.00924 1.21124 0.87757 0.86486 0.74645 1.90678 1.15848 1.87921 1.50726 1.21744 0.99136 0.90287 1.05880 1.21031 0.97121 0.93282 1.00310 1.19546 0.95500 0.92481 0.97148 1.21569 0.93606 0.91955 1.50398 0.96124 1.26189 1.04079 0.95723 0.93987 1.70110 1.37233 0.99657 1.52874 0.85521 0.78646 0.78307 0.79305 1.19081 1.21378 1.15687 0.91781 0.89859 0.87990 0.90135 0.84509 0.80475 0.79298 0.86711 0.87211 0.94526 0.94367 0.95197 0.95529 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.29 127.77 1.31 1.89 16 2 N -0.61 -9.97 2.86 -851.13 -2.43 -12.40 16 3 C 0.18 2.39 5.91 85.63 0.51 2.89 16 4 C -0.22 -3.10 6.03 24.51 0.15 -2.95 16 5 C -0.07 -0.85 10.20 22.66 0.23 -0.62 16 6 C -0.07 -1.09 5.84 -21.00 -0.12 -1.21 16 7 C 0.30 5.60 15.62 88.33 1.38 6.98 16 8 N -0.47 -11.07 18.54 19.00 0.35 -10.72 16 9 C -0.19 -2.68 10.78 67.29 0.73 -1.96 16 10 S 0.23 3.86 23.00 -56.49 -1.30 2.56 16 11 C 0.51 13.28 7.67 87.66 0.67 13.95 16 12 O -0.57 -19.75 15.56 -3.02 -0.05 -19.79 16 13 C -0.13 -3.46 4.25 29.85 0.13 -3.33 16 14 C -0.08 -3.14 4.44 30.59 0.14 -3.01 16 15 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 16 C -0.54 -31.76 9.66 25.60 0.25 -31.51 16 17 H 0.02 1.37 7.99 -2.91 -0.02 1.35 16 18 C 0.00 -0.24 5.47 84.65 0.46 0.23 16 19 N -0.96 -61.38 13.96 21.45 0.30 -61.08 16 20 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 0.67 6.44 -2.39 -0.02 0.66 16 26 H 0.10 0.27 7.89 -2.39 -0.02 0.25 16 27 H 0.08 1.39 7.42 -2.39 -0.02 1.37 16 28 H 0.14 0.71 7.89 -2.39 -0.02 0.69 16 29 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 30 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.11 2.44 7.40 -2.39 -0.02 2.42 16 32 H 0.11 2.44 8.11 -2.39 -0.02 2.42 16 33 H 0.04 1.59 8.10 -2.38 -0.02 1.57 16 34 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.03 1.27 7.20 -2.39 -0.02 1.26 16 36 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -79.36 339.02 5.73 -73.63 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.02 Total: 1.56 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.95 Total: -18.96 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.78 Total: -84.20 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.30 Total: 2.56 kcal Total: -79.36 5.73 -73.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887965164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.792 kcal (2) G-P(sol) polarization free energy of solvation -79.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds