Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86798 * 119.99803 * 2 1 4 4 H 1.48499 * 109.47090 * 240.00149 * 3 2 1 5 5 H 1.48495 * 109.47559 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46919 * 120.00244 * 3 2 1 7 7 C 1.39002 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00354 * 182.14201 * 7 2 1 9 9 N 1.36897 * 119.99858 * 2.14093 * 7 2 1 10 10 C 1.34779 * 119.99954 * 119.61120 * 9 7 2 11 11 O 1.21724 * 119.99995 * 183.97882 * 10 9 7 12 12 C 1.46566 * 119.99943 * 3.97637 * 10 9 7 13 13 C 1.36773 * 126.17735 * 352.65115 * 12 10 9 14 14 N 1.30948 * 113.91844 * 179.97438 * 13 12 10 15 15 C 1.29368 * 117.46629 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.70063 * 179.73120 * 15 14 13 17 17 C 1.52999 * 109.47061 * 90.02270 * 16 15 14 18 18 C 1.52998 * 117.50399 * 243.62163 * 17 16 15 19 19 C 1.53003 * 117.49961 * 174.99567 * 17 16 15 20 20 S 1.70918 * 110.59972 * 359.97438 * 15 14 13 21 21 C 1.46500 * 119.99932 * 299.60858 * 9 7 2 22 22 C 1.53002 * 117.49948 * 2.59086 * 21 9 7 23 23 C 1.53003 * 117.49887 * 293.96728 * 21 9 7 24 24 H 0.97003 * 119.99741 * 4.99947 * 1 2 3 25 25 H 1.08006 * 123.04142 * 359.97438 * 13 12 10 26 26 H 1.09001 * 109.47415 * 210.02544 * 16 15 14 27 27 H 1.08999 * 109.47280 * 330.02995 * 16 15 14 28 28 H 1.09003 * 115.54606 * 29.33650 * 17 16 15 29 29 H 1.09001 * 117.49466 * 0.02562 * 18 17 16 30 30 H 1.08996 * 117.49650 * 145.01916 * 18 17 16 31 31 H 1.09005 * 117.49892 * 214.98013 * 19 17 16 32 32 H 1.08992 * 117.49514 * 359.97438 * 19 17 16 33 33 H 1.09005 * 115.54816 * 148.30246 * 21 9 7 34 34 H 1.08997 * 117.49524 * 0.02562 * 22 21 9 35 35 H 1.09000 * 117.49518 * 145.02176 * 22 21 9 36 36 H 1.08995 * 117.49880 * 214.98039 * 23 21 9 37 37 H 1.08995 * 117.49754 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0090 -1.2038 -0.0005 8 1 3.0884 -1.2042 0.0344 9 7 1.3252 -2.3889 -0.0454 10 6 1.5207 -3.2414 -1.0708 11 8 0.8605 -4.2610 -1.1490 12 6 2.5283 -2.9406 -2.0919 13 6 3.2371 -1.7767 -2.2085 14 7 4.0784 -1.7657 -3.2120 15 6 4.1377 -2.8247 -3.9525 16 6 5.0404 -2.9859 -5.1484 17 6 6.3781 -3.5789 -4.7014 18 6 7.6295 -2.7181 -4.8859 19 6 7.3944 -3.9299 -5.7900 20 16 3.0454 -4.0133 -3.3907 21 6 0.3810 -2.7306 1.0214 22 6 0.1579 -1.6954 2.1257 23 6 0.9521 -2.9695 2.4206 24 1 -0.4850 0.8369 -0.0732 25 1 3.1141 -0.9421 -1.5340 26 1 4.5706 -3.6531 -5.8711 27 1 5.2103 -2.0128 -5.6092 28 1 6.3362 -4.2253 -3.8247 29 1 7.4996 -1.7291 -5.3255 30 1 8.4111 -2.7979 -4.1304 31 1 8.0214 -4.8069 -5.6292 32 1 7.1097 -3.7388 -6.8246 33 1 -0.4739 -3.3344 0.7169 34 1 0.7134 -0.7600 2.0583 35 1 -0.8440 -1.6179 2.5479 36 1 0.4726 -3.7301 3.0367 37 1 2.0302 -2.8721 2.5475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888556183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = 74.935315 kcal Electronic energy + Delta-G solvation = -20862.644870 eV Core-core repulsion = 17734.232214 eV Total energy + Delta-G solvation = -3128.412656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44378 -38.44299 -37.33905 -36.04883 -33.44835 -31.72980 -30.99727 -27.96859 -25.57735 -23.84808 -22.44715 -21.89933 -21.27084 -20.77885 -20.03153 -19.07951 -17.76747 -16.63682 -16.07957 -15.35382 -15.11959 -14.77841 -14.51183 -14.07668 -13.97395 -13.45180 -13.23901 -12.91467 -12.82636 -12.35479 -12.15643 -11.61503 -11.59487 -11.49546 -11.24957 -11.08226 -10.64419 -10.53761 -10.45925 -10.41620 -10.02754 -9.67985 -9.43492 -9.29166 -8.81644 -8.77578 -8.65629 -8.13929 -7.25779 -6.52471 -4.48936 0.99968 1.83903 2.36749 3.05595 3.11517 3.12830 3.30285 3.72023 3.92208 4.24541 4.38420 4.65331 4.70140 4.75989 4.84889 5.00523 5.13686 5.31653 5.52347 5.57280 5.68095 5.81815 5.95581 5.96412 5.99919 6.02880 6.14451 6.15717 6.18977 6.30652 6.48093 6.83074 7.01936 7.08157 7.19413 7.35630 7.97977 8.13030 8.35616 8.81836 9.25679 9.74288 10.47386 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018681 B = 0.005164 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.468508 B = 5420.887204 C = 6394.680972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.399 5.399 10 C 0.560 3.440 11 O -0.597 6.597 12 C -0.239 4.239 13 C 0.068 3.932 14 N -0.476 5.476 15 C 0.019 3.981 16 C -0.008 4.008 17 C -0.145 4.145 18 C -0.174 4.174 19 C -0.180 4.180 20 S 0.155 5.845 21 C 0.107 3.893 22 C -0.134 4.134 23 C -0.218 4.218 24 H 0.274 0.726 25 H 0.224 0.776 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -2.642 -6.194 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.149 4.149 3 Si 0.724 3.276 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.109 0.891 9 N -0.116 5.116 10 C 0.349 3.651 11 O -0.483 6.483 12 C -0.362 4.362 13 C -0.086 4.086 14 N -0.191 5.191 15 C -0.257 4.257 16 C -0.048 4.048 17 C -0.165 4.165 18 C -0.211 4.211 19 C -0.217 4.217 20 S 0.411 5.589 21 C 0.002 3.998 22 C -0.172 4.172 23 C -0.257 4.257 24 H 0.085 0.915 25 H 0.239 0.761 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.687 -3.580 -6.631 11.500 hybrid contribution 0.159 1.715 0.686 1.854 sum 8.846 -1.865 -5.946 10.820 Atomic orbital electron populations 1.69955 1.06088 1.28539 1.42036 1.25689 0.95477 0.99677 0.94098 0.86425 0.79843 0.81312 0.80049 1.18564 1.20337 1.19123 1.19238 0.91369 0.82383 1.56113 0.89121 1.42401 1.36619 1.16256 1.16310 1.17033 0.82699 0.84671 0.80704 1.90679 1.50969 1.29039 1.77662 1.26005 1.07665 0.98758 1.03768 1.24533 0.89985 0.99269 0.94776 1.66282 1.21435 1.25488 1.05903 1.27085 1.02081 0.94308 1.02189 1.19735 0.91150 1.02249 0.91704 1.22217 0.89914 1.03465 1.00912 1.23017 0.99583 0.95753 1.02699 1.22992 1.02879 0.99678 0.96143 1.83643 1.33174 1.19210 1.22855 1.21227 0.94409 1.01542 0.82605 1.22912 0.99379 0.94401 1.00470 1.23379 1.00024 1.01276 1.01047 0.91510 0.76086 0.89624 0.89072 0.87639 0.88540 0.88934 0.88809 0.88701 0.87787 0.87100 0.90647 0.90304 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.79 11.15 55.50 0.62 -20.18 16 2 C 0.06 1.45 3.83 -17.45 -0.07 1.38 16 3 Si 0.90 18.23 29.07 -169.99 -4.94 13.28 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.36 -8.72 5.29 -15.01 -0.08 -8.79 16 8 H 0.09 2.12 6.27 -52.49 -0.33 1.79 16 9 N -0.40 -9.99 2.70 -109.23 -0.29 -10.29 16 10 C 0.56 14.35 7.60 -12.90 -0.10 14.26 16 11 O -0.60 -16.39 16.75 5.17 0.09 -16.31 16 12 C -0.24 -5.41 6.44 -36.76 -0.24 -5.65 16 13 C 0.07 1.49 9.94 -18.46 -0.18 1.31 16 14 N -0.48 -9.45 10.50 -11.25 -0.12 -9.57 16 15 C 0.02 0.32 6.58 -13.31 -0.09 0.23 16 16 C -0.01 -0.09 6.07 -27.88 -0.17 -0.26 16 17 C -0.15 -1.66 5.72 -90.62 -0.52 -2.18 16 18 C -0.17 -1.77 10.18 -26.73 -0.27 -2.05 16 19 C -0.18 -1.61 10.25 -26.73 -0.27 -1.88 16 20 S 0.16 2.85 23.01 -107.50 -2.47 0.38 16 21 C 0.11 2.53 5.61 -67.93 -0.38 2.15 16 22 C -0.13 -2.86 8.32 -26.73 -0.22 -3.09 16 23 C -0.22 -4.41 10.37 -26.73 -0.28 -4.69 16 24 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 25 H 0.22 5.00 3.78 -52.48 -0.20 4.80 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 28 H 0.11 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.10 0.96 8.03 -51.93 -0.42 0.55 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 2.54 7.76 -51.93 -0.40 2.14 16 34 H 0.11 2.55 5.51 -51.93 -0.29 2.26 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -28.20 323.29 -9.67 -37.87 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.56 Total: 9.20 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.87 Total: -9.26 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.21 Total: -40.03 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.31 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.94 Total: 13.28 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.47 Total: 0.38 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.20 -9.67 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.804 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds