Wall clock time and date at job start Tue Mar 31 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86798 * 119.99803 * 2 1 4 4 H 1.48499 * 109.47090 * 240.00149 * 3 2 1 5 5 H 1.48495 * 109.47559 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46919 * 120.00244 * 3 2 1 7 7 C 1.39002 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00354 * 182.14201 * 7 2 1 9 9 N 1.36897 * 119.99858 * 2.14093 * 7 2 1 10 10 C 1.34779 * 119.99954 * 119.61120 * 9 7 2 11 11 O 1.21724 * 119.99995 * 183.97882 * 10 9 7 12 12 C 1.46566 * 119.99943 * 3.97637 * 10 9 7 13 13 C 1.36773 * 126.17735 * 352.65115 * 12 10 9 14 14 N 1.30948 * 113.91844 * 179.97438 * 13 12 10 15 15 C 1.29368 * 117.46629 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.70063 * 179.73120 * 15 14 13 17 17 C 1.52999 * 109.47061 * 90.02270 * 16 15 14 18 18 C 1.52998 * 117.50399 * 243.62163 * 17 16 15 19 19 C 1.53003 * 117.49961 * 174.99567 * 17 16 15 20 20 S 1.70918 * 110.59972 * 359.97438 * 15 14 13 21 21 C 1.46500 * 119.99932 * 299.60858 * 9 7 2 22 22 C 1.53002 * 117.49948 * 2.59086 * 21 9 7 23 23 C 1.53003 * 117.49887 * 293.96728 * 21 9 7 24 24 H 0.97003 * 119.99741 * 4.99947 * 1 2 3 25 25 H 1.08006 * 123.04142 * 359.97438 * 13 12 10 26 26 H 1.09001 * 109.47415 * 210.02544 * 16 15 14 27 27 H 1.08999 * 109.47280 * 330.02995 * 16 15 14 28 28 H 1.09003 * 115.54606 * 29.33650 * 17 16 15 29 29 H 1.09001 * 117.49466 * 0.02562 * 18 17 16 30 30 H 1.08996 * 117.49650 * 145.01916 * 18 17 16 31 31 H 1.09005 * 117.49892 * 214.98013 * 19 17 16 32 32 H 1.08992 * 117.49514 * 359.97438 * 19 17 16 33 33 H 1.09005 * 115.54816 * 148.30246 * 21 9 7 34 34 H 1.08997 * 117.49524 * 0.02562 * 22 21 9 35 35 H 1.09000 * 117.49518 * 145.02176 * 22 21 9 36 36 H 1.08995 * 117.49880 * 214.98039 * 23 21 9 37 37 H 1.08995 * 117.49754 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0090 -1.2038 -0.0005 8 1 3.0884 -1.2042 0.0344 9 7 1.3252 -2.3889 -0.0454 10 6 1.5207 -3.2414 -1.0708 11 8 0.8605 -4.2610 -1.1490 12 6 2.5283 -2.9406 -2.0919 13 6 3.2371 -1.7767 -2.2085 14 7 4.0784 -1.7657 -3.2120 15 6 4.1377 -2.8247 -3.9525 16 6 5.0404 -2.9859 -5.1484 17 6 6.3781 -3.5789 -4.7014 18 6 7.6295 -2.7181 -4.8859 19 6 7.3944 -3.9299 -5.7900 20 16 3.0454 -4.0133 -3.3907 21 6 0.3810 -2.7306 1.0214 22 6 0.1579 -1.6954 2.1257 23 6 0.9521 -2.9695 2.4206 24 1 -0.4850 0.8369 -0.0732 25 1 3.1141 -0.9421 -1.5340 26 1 4.5706 -3.6531 -5.8711 27 1 5.2103 -2.0128 -5.6092 28 1 6.3362 -4.2253 -3.8247 29 1 7.4996 -1.7291 -5.3255 30 1 8.4111 -2.7979 -4.1304 31 1 8.0214 -4.8069 -5.6292 32 1 7.1097 -3.7388 -6.8246 33 1 -0.4739 -3.3344 0.7169 34 1 0.7134 -0.7600 2.0583 35 1 -0.8440 -1.6179 2.5479 36 1 0.4726 -3.7301 3.0367 37 1 2.0302 -2.8721 2.5475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:36 Heat of formation + Delta-G solvation = 59.815144 kcal Electronic energy + Delta-G solvation = -20863.300530 eV Core-core repulsion = 17734.232214 eV Total energy + Delta-G solvation = -3129.068316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13271 -40.07490 -38.28906 -37.90540 -35.24147 -33.51554 -32.39173 -29.44163 -27.42844 -25.31674 -23.63993 -23.15667 -22.95915 -21.92188 -21.61974 -20.75097 -19.42880 -18.31038 -17.55182 -17.13504 -16.46194 -16.19242 -16.00375 -15.61698 -15.47024 -15.03124 -14.82228 -14.43003 -14.24417 -13.91321 -13.53180 -13.40600 -12.89954 -12.83329 -12.47464 -12.30451 -12.27615 -12.17423 -12.08564 -11.45552 -11.34024 -11.16839 -11.00792 -10.83571 -10.57550 -10.41972 -10.33723 -9.70922 -9.11994 -8.34851 -6.37007 -0.56514 0.32089 0.82588 1.43836 1.45106 1.52254 1.66496 2.21640 2.41374 2.85015 2.87640 2.93491 3.22980 3.37210 3.87718 4.03558 4.06226 4.17654 4.23669 4.26511 4.36546 4.45327 4.54123 4.68126 4.77250 4.78972 4.85696 4.87112 5.05904 5.09782 5.29506 5.30726 5.31415 5.33792 5.43229 5.59545 6.11889 6.27225 6.78889 6.96485 7.36111 7.87198 8.66073 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018681 B = 0.005164 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.468508 B = 5420.887204 C = 6394.680972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.032 3.968 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.406 5.406 10 C 0.544 3.456 11 O -0.632 6.632 12 C -0.289 4.289 13 C 0.077 3.923 14 N -0.499 5.499 15 C 0.048 3.952 16 C -0.008 4.008 17 C -0.166 4.166 18 C -0.181 4.181 19 C -0.154 4.154 20 S 0.188 5.812 21 C 0.069 3.931 22 C -0.123 4.123 23 C -0.190 4.190 24 H 0.275 0.725 25 H 0.212 0.788 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.129 -2.394 -7.367 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.110 0.890 9 N -0.121 5.121 10 C 0.334 3.666 11 O -0.522 6.522 12 C -0.413 4.413 13 C -0.078 4.078 14 N -0.213 5.213 15 C -0.227 4.227 16 C -0.049 4.049 17 C -0.186 4.186 18 C -0.218 4.218 19 C -0.191 4.191 20 S 0.445 5.555 21 C -0.036 4.036 22 C -0.160 4.160 23 C -0.228 4.228 24 H 0.085 0.915 25 H 0.227 0.773 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.670 -3.332 -7.783 13.621 hybrid contribution -0.384 1.577 0.957 1.884 sum 10.287 -1.756 -6.827 12.470 Atomic orbital electron populations 1.70058 1.07407 1.29244 1.43050 1.26298 0.95952 1.02091 0.93270 0.85513 0.78658 0.77526 0.80188 1.18514 1.20301 1.18172 1.19395 0.91488 0.82426 1.56365 0.88951 1.42620 1.36464 1.16505 1.16554 1.17506 0.83232 0.84465 0.81395 1.90618 1.52543 1.30334 1.78708 1.25852 1.08915 1.00857 1.05628 1.24331 0.89862 0.98614 0.94980 1.66349 1.21859 1.26756 1.06380 1.27990 1.00368 0.92627 1.01711 1.20027 0.91027 1.03773 0.90054 1.22126 0.89777 1.04569 1.02117 1.23110 0.98793 0.96468 1.03384 1.23098 1.00596 0.99236 0.96174 1.83428 1.32799 1.18457 1.20864 1.21347 0.94890 1.03528 0.83805 1.22821 1.00175 0.93855 0.99169 1.23393 0.99993 1.01073 0.98351 0.91478 0.77262 0.86937 0.87900 0.88921 0.88257 0.88855 0.87615 0.86982 0.89709 0.88608 0.89166 0.87401 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.84 11.15 21.67 0.24 -43.60 16 2 C 0.03 1.52 3.83 84.94 0.33 1.85 16 3 Si 0.96 37.38 29.07 68.60 1.99 39.37 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.37 -18.09 5.29 84.09 0.44 -17.64 16 8 H 0.09 4.42 6.27 -2.91 -0.02 4.40 16 9 N -0.41 -20.98 2.70 -617.71 -1.66 -22.64 16 10 C 0.54 28.95 7.60 86.41 0.66 29.61 16 11 O -0.63 -36.23 16.75 -4.43 -0.07 -36.31 16 12 C -0.29 -13.42 6.44 24.10 0.16 -13.26 16 13 C 0.08 3.41 9.94 84.48 0.84 4.25 16 14 N -0.50 -19.36 10.50 -189.51 -1.99 -21.35 16 15 C 0.05 1.56 6.58 88.47 0.58 2.14 16 16 C -0.01 -0.18 6.07 29.85 0.18 0.00 16 17 C -0.17 -3.33 5.72 -10.79 -0.06 -3.39 16 18 C -0.18 -3.19 10.18 30.59 0.31 -2.88 16 19 C -0.15 -2.17 10.25 30.60 0.31 -1.86 16 20 S 0.19 6.77 23.01 -56.49 -1.30 5.47 16 21 C 0.07 3.35 5.61 44.99 0.25 3.61 16 22 C -0.12 -5.25 8.32 30.60 0.25 -4.99 16 23 C -0.19 -7.56 10.37 30.60 0.32 -7.24 16 24 H 0.28 13.25 8.32 -92.71 -0.77 12.47 16 25 H 0.21 9.63 3.78 -2.91 -0.01 9.62 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.10 2.12 7.87 -2.39 -0.02 2.10 16 28 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.10 1.70 8.03 -2.39 -0.02 1.68 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 4.35 7.76 -2.38 -0.02 4.33 16 34 H 0.10 4.42 5.51 -2.39 -0.01 4.41 16 35 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 37 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -62.47 323.29 2.88 -59.60 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 1.10 Total: 29.27 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.57 Total: -9.81 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.41 Total: -87.60 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.31 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.99 Total: 39.37 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.30 Total: 5.47 kcal Total: -62.47 2.88 -59.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.413 kcal (2) G-P(sol) polarization free energy of solvation -62.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds