Wall clock time and date at job start Tue Mar 31 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99570 * 2 1 4 4 H 1.48503 * 109.47020 * 269.99592 * 3 2 1 5 5 H 1.48489 * 109.47198 * 29.99875 * 3 2 1 6 6 H 1.48501 * 109.46917 * 150.00152 * 3 2 1 7 7 C 1.38802 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99574 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00177 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47417 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99609 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47007 * 35.00144 * 14 13 11 16 16 C 1.50701 * 109.46589 * 154.99999 * 14 13 11 17 17 C 1.38655 * 120.78688 * 219.99678 * 16 14 13 18 18 C 1.38199 * 119.16350 * 179.97438 * 17 16 14 19 19 N 1.31871 * 120.76379 * 0.02562 * 18 17 16 20 20 C 1.31870 * 121.72518 * 359.94860 * 19 18 17 21 21 C 1.38199 * 120.76682 * 0.05382 * 20 19 18 22 22 C 1.52995 * 109.47065 * 274.99767 * 14 13 11 23 23 C 1.53001 * 117.49947 * 128.62713 * 22 14 13 24 24 C 1.53001 * 117.49997 * 59.99990 * 22 14 13 25 25 H 0.96990 * 120.00626 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47080 * 59.99747 * 10 9 7 27 27 H 1.09005 * 109.47299 * 300.00440 * 10 9 7 28 28 H 0.96999 * 119.99708 * 359.97438 * 13 11 10 29 29 H 1.08004 * 120.41704 * 359.70754 * 17 16 14 30 30 H 1.08003 * 119.62207 * 180.02562 * 18 17 16 31 31 H 1.08006 * 119.61530 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.42056 * 179.97438 * 21 20 19 33 33 H 1.09004 * 115.55229 * 274.33091 * 22 14 13 34 34 H 1.08998 * 117.49666 * 359.97438 * 23 22 14 35 35 H 1.09001 * 117.49743 * 145.02058 * 23 22 14 36 36 H 1.09005 * 117.49944 * 214.97611 * 24 22 14 37 37 H 1.08996 * 117.49935 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9877 -5.3027 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3431 0.0003 14 6 2.3308 -7.7151 0.0003 15 1 1.4153 -7.7602 -0.5895 16 6 3.3609 -8.6370 -0.5998 17 6 2.9833 -9.6669 -1.4479 18 6 3.9560 -10.4921 -1.9798 19 7 5.2290 -10.3089 -1.6885 20 6 5.6244 -9.3398 -0.8864 21 6 4.7086 -8.4754 -0.3172 22 6 2.0337 -8.1484 1.4372 23 6 0.6505 -8.7349 1.7266 24 6 1.0059 -7.3319 2.2232 25 1 -0.4850 0.8399 -0.0004 26 1 3.1247 -3.7313 0.8905 27 1 3.1247 -3.7313 -0.8894 28 1 3.8013 -6.1833 0.0006 29 1 1.9419 -9.8248 -1.6865 30 1 3.6702 -11.2963 -2.6416 31 1 6.6761 -9.2206 -0.6713 32 1 5.0386 -7.6839 0.3393 33 1 2.8798 -8.5579 1.9892 34 1 -0.0480 -8.8115 0.8933 35 1 0.5864 -9.5303 2.4691 36 1 1.1756 -7.2045 3.2924 37 1 0.5411 -6.4862 1.7165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890920128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:10 Heat of formation + Delta-G solvation = 1.381797 kcal Electronic energy + Delta-G solvation = -20161.124889 eV Core-core repulsion = 17029.522714 eV Total energy + Delta-G solvation = -3131.602176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64119 -40.51021 -38.24844 -35.70217 -34.58354 -33.50527 -32.13725 -30.91005 -27.96510 -27.49362 -24.53249 -23.54286 -23.20201 -22.12062 -21.24495 -19.89681 -18.38460 -17.91536 -17.15853 -17.00711 -16.87644 -16.60735 -16.43431 -16.00529 -15.59545 -15.16560 -14.74807 -14.64349 -14.47662 -14.43994 -13.55293 -13.42049 -13.17657 -13.08912 -12.89819 -12.61563 -12.51301 -12.30843 -11.75165 -11.43237 -11.31425 -11.14092 -10.88702 -10.61397 -10.48620 -10.27273 -10.10406 -10.05285 -8.65291 -8.34779 -6.12010 0.17992 0.19865 1.26646 1.42211 1.46566 1.56371 1.58858 2.15903 2.27644 2.84791 2.90714 2.99549 3.31008 3.36256 3.61148 3.79599 3.85299 3.95417 4.09153 4.11887 4.14022 4.22554 4.29030 4.31123 4.50820 4.59584 4.68249 4.79320 4.88748 4.97162 5.00743 5.18720 5.23506 5.33551 5.42047 5.49050 5.74826 6.19718 6.44443 7.02264 7.06927 7.21477 8.74238 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.003413 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.165242 B = 8201.528756 C = 8959.928266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.143 6.143 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.550 6.550 13 N -0.708 5.708 14 C 0.220 3.780 15 H 0.082 0.918 16 C -0.047 4.047 17 C -0.163 4.163 18 C 0.095 3.905 19 N -0.511 5.511 20 C 0.096 3.904 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.199 4.199 25 H 0.271 0.729 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.413 0.587 29 H 0.149 0.851 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 -20.379 0.670 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.084 5.916 10 C -0.283 4.283 11 C 0.327 3.673 12 O -0.427 6.427 13 N -0.362 5.362 14 C 0.115 3.885 15 H 0.100 0.900 16 C -0.055 4.055 17 C -0.183 4.183 18 C -0.061 4.061 19 N -0.220 5.220 20 C -0.061 4.061 21 C -0.186 4.186 22 C -0.176 4.176 23 C -0.195 4.195 24 C -0.236 4.236 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.251 0.749 29 H 0.167 0.833 30 H 0.195 0.805 31 H 0.197 0.803 32 H 0.171 0.829 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.643 -21.179 0.299 23.273 hybrid contribution 1.116 2.026 0.394 2.347 sum 10.760 -19.153 0.693 21.979 Atomic orbital electron populations 1.70170 1.07923 1.28596 1.48029 1.26097 0.95939 1.03239 0.93765 0.84979 0.78249 0.76159 0.78767 1.19376 1.20345 1.18192 1.23217 0.95358 0.92176 1.58822 0.90007 1.85517 1.10134 0.98917 1.97026 1.23377 1.03753 0.94480 1.06641 1.19952 0.86327 0.86329 0.74718 1.90642 1.16971 1.85743 1.49365 1.45845 1.10283 1.04255 1.75803 1.19257 0.95364 0.79335 0.94499 0.89979 1.20206 0.94419 0.95434 0.95475 1.22219 1.02478 0.95911 0.97692 1.23142 0.87626 0.98248 0.97093 1.67726 1.19430 1.20509 1.14354 1.23174 1.01405 0.89722 0.91772 1.22161 0.92679 1.01815 1.01934 1.22601 0.94344 1.05329 0.95372 1.22998 0.96484 0.96356 1.03627 1.23204 1.03879 0.96327 1.00174 0.92006 0.87282 0.87523 0.74925 0.83325 0.80455 0.80331 0.82887 0.86186 0.89066 0.86795 0.88582 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 9 S -0.14 -7.76 20.57 -56.49 -1.16 -8.92 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.54 18.79 7.18 87.66 0.63 19.42 16 12 O -0.55 -23.51 12.89 -3.04 -0.04 -23.55 16 13 N -0.71 -17.03 5.02 -446.10 -2.24 -19.27 16 14 C 0.22 4.79 2.51 44.24 0.11 4.90 16 15 H 0.08 2.15 7.24 -2.39 -0.02 2.13 16 16 C -0.05 -0.82 4.96 -19.67 -0.10 -0.91 16 17 C -0.16 -2.63 9.78 22.36 0.22 -2.41 16 18 C 0.10 1.51 11.18 84.68 0.95 2.46 16 19 N -0.51 -9.48 10.36 -195.84 -2.03 -11.51 16 20 C 0.10 1.44 11.18 84.68 0.95 2.39 16 21 C -0.17 -2.42 9.15 22.36 0.20 -2.22 16 22 C -0.16 -3.26 5.34 -10.79 -0.06 -3.31 16 23 C -0.16 -3.25 10.18 30.60 0.31 -2.94 16 24 C -0.20 -5.25 9.73 30.60 0.30 -4.95 16 25 H 0.27 15.33 8.31 -92.72 -0.77 14.56 16 26 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 27 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.41 7.38 6.95 -92.71 -0.64 6.73 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.15 1.58 7.01 -2.91 -0.02 1.55 16 33 H 0.12 2.09 8.11 -2.38 -0.02 2.07 16 34 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.09 3.10 5.02 -2.39 -0.01 3.09 16 Total: -1.00 -74.66 330.51 2.35 -72.31 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.45 Total: 22.04 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 5.06 Total: -21.14 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -3.98 Total: -85.96 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -74.66 2.35 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890920128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.691 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds