Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99633 * 2 1 4 4 H 1.48502 * 109.47474 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47416 * 30.00430 * 3 2 1 6 6 H 1.48508 * 109.46890 * 150.00431 * 3 2 1 7 7 C 1.38803 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99474 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00016 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99922 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99749 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99783 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47254 * 324.99447 * 14 13 11 16 16 C 1.50703 * 109.46682 * 204.99680 * 14 13 11 17 17 C 1.38654 * 120.78409 * 139.99839 * 16 14 13 18 18 C 1.38209 * 119.15786 * 180.02562 * 17 16 14 19 19 N 1.31870 * 120.76375 * 0.26353 * 18 17 16 20 20 C 1.31872 * 121.72489 * 359.46946 * 19 18 17 21 21 C 1.38200 * 120.76402 * 0.52682 * 20 19 18 22 22 C 1.53000 * 109.47139 * 84.99789 * 14 13 11 23 23 C 1.52995 * 117.50070 * 8.62094 * 22 14 13 24 24 C 1.52996 * 60.00229 * 252.50986 * 23 22 14 25 25 H 0.97000 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47417 * 59.99317 * 10 9 7 27 27 H 1.09002 * 109.46804 * 299.99828 * 10 9 7 28 28 H 0.96999 * 120.00307 * 359.97438 * 13 11 10 29 29 H 1.07995 * 120.42251 * 0.04566 * 17 16 14 30 30 H 1.08002 * 119.61346 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.61160 * 180.27376 * 20 19 18 32 32 H 1.08003 * 120.41583 * 179.72635 * 21 20 19 33 33 H 1.08998 * 115.54447 * 154.32546 * 22 14 13 34 34 H 1.09005 * 117.49671 * 0.02562 * 23 22 14 35 35 H 1.09000 * 117.50090 * 145.01937 * 23 22 14 36 36 H 1.08995 * 117.49735 * 252.51475 * 24 23 22 37 37 H 1.08997 * 117.51796 * 107.47648 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2323 -0.0021 12 8 6.3441 -2.2960 -0.0035 13 7 6.0458 -4.4945 -0.0016 14 6 7.4910 -4.7354 -0.0033 15 1 7.9870 -3.9655 -0.5941 16 6 7.7738 -6.0888 -0.6029 17 6 8.8533 -6.2771 -1.4523 18 6 9.0811 -7.5325 -1.9837 19 7 8.2831 -8.5420 -1.6953 20 6 7.2504 -8.4007 -0.8875 21 6 6.9603 -7.1750 -0.3187 22 6 8.0166 -4.6940 1.4330 23 6 6.9852 -4.6278 2.5611 24 6 7.8243 -3.3951 2.2185 25 1 -0.4851 0.8400 0.0004 26 1 3.6434 -3.4317 -0.8905 27 1 3.6442 -3.4312 0.8894 28 1 5.4293 -5.2433 -0.0001 29 1 9.5081 -5.4534 -1.6954 30 1 9.9196 -7.6874 -2.6465 31 1 6.6217 -9.2518 -0.6712 32 1 6.1105 -7.0646 0.3386 33 1 8.9280 -5.2630 1.6166 34 1 5.9321 -4.6142 2.2801 35 1 7.2179 -5.1534 3.4872 36 1 8.6090 -3.1099 2.9191 37 1 7.3236 -2.5701 1.7118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890920129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = 27.571179 kcal Electronic energy + Delta-G solvation = -20344.282556 eV Core-core repulsion = 17213.816037 eV Total energy + Delta-G solvation = -3130.466519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89380 -39.63560 -37.17455 -34.51065 -32.66323 -32.47027 -31.49745 -29.65937 -27.03196 -25.63482 -23.87001 -22.84308 -22.27748 -21.11019 -19.97052 -18.17660 -17.34178 -16.85015 -16.40730 -16.08496 -15.91868 -15.36472 -15.00767 -14.73793 -14.26199 -13.98697 -13.91041 -13.61679 -13.34603 -12.94715 -12.81778 -12.17877 -12.12108 -11.92279 -11.41915 -11.30710 -11.04016 -10.68757 -10.56368 -10.20509 -9.93925 -9.87054 -9.76412 -9.57809 -9.46693 -9.06901 -9.02050 -8.55659 -6.96363 -6.32327 -4.04635 0.82023 0.88035 2.67211 2.81325 3.19907 3.30430 3.46885 3.49902 3.56169 3.79820 4.12324 4.17272 4.29544 4.49656 4.64639 4.70977 4.79030 4.85333 4.92604 5.03497 5.06781 5.09716 5.26415 5.30612 5.42825 5.52404 5.64658 5.66943 5.69410 5.85305 5.93591 5.96504 6.08931 6.36457 6.37938 6.44019 7.45185 7.65975 7.90597 8.35370 8.38240 9.13644 10.76939 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.003564 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.336135 B = 7854.971114 C = 8275.434870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.126 4.126 11 C 0.534 3.466 12 O -0.511 6.511 13 N -0.730 5.730 14 C 0.217 3.783 15 H 0.104 0.896 16 C -0.038 4.038 17 C -0.162 4.162 18 C 0.100 3.900 19 N -0.488 5.488 20 C 0.101 3.899 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.173 4.173 24 C -0.178 4.178 25 H 0.271 0.729 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.825 -15.163 0.820 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.386 6.386 13 N -0.385 5.385 14 C 0.111 3.889 15 H 0.122 0.878 16 C -0.047 4.047 17 C -0.182 4.182 18 C -0.056 4.056 19 N -0.197 5.197 20 C -0.055 4.055 21 C -0.183 4.183 22 C -0.190 4.190 23 C -0.210 4.210 24 C -0.214 4.214 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.235 0.765 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.091 -14.300 0.444 23.065 hybrid contribution -1.284 0.062 0.406 1.349 sum 16.807 -14.238 0.850 22.044 Atomic orbital electron populations 1.69933 1.05934 1.27818 1.47938 1.24711 0.94444 0.98966 0.93145 0.86740 0.81886 0.83300 0.79946 1.19199 1.19911 1.15911 1.22309 0.88249 0.97543 1.58938 0.89393 1.84772 1.09336 0.99616 1.97429 1.23291 0.93724 1.04742 1.05868 1.20297 0.90680 0.82144 0.74774 1.90645 1.58525 1.42106 1.47278 1.46110 1.06514 1.08376 1.77491 1.19244 0.82078 0.92937 0.94591 0.87781 1.20318 0.94550 0.95207 0.94627 1.22057 0.98549 0.99430 0.98148 1.22773 0.97519 0.88291 0.97043 1.67689 1.04566 1.33848 1.13563 1.22774 0.93879 0.96642 0.92239 1.21967 1.01080 0.93603 1.01694 1.22618 1.01076 1.03659 0.91598 1.22932 0.97375 1.02574 0.98136 1.23391 1.02824 0.92787 1.02438 0.91896 0.88465 0.88419 0.76476 0.84422 0.82588 0.82593 0.84717 0.87518 0.88532 0.89212 0.89272 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.45 27.74 -169.99 -4.71 16.74 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.37 18.55 -107.50 -1.99 -5.36 16 10 C -0.13 -2.30 6.16 36.01 0.22 -2.08 16 11 C 0.53 8.66 6.68 -10.99 -0.07 8.59 16 12 O -0.51 -9.90 12.89 5.55 0.07 -9.83 16 13 N -0.73 -8.56 3.58 -54.93 -0.20 -8.76 16 14 C 0.22 2.32 2.67 -69.08 -0.18 2.14 16 15 H 0.10 1.28 7.48 -51.93 -0.39 0.89 16 16 C -0.04 -0.35 4.96 -104.32 -0.52 -0.87 16 17 C -0.16 -1.37 9.78 -39.44 -0.39 -1.76 16 18 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 19 N -0.49 -4.94 10.36 -13.25 -0.14 -5.07 16 20 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 21 C -0.16 -1.36 9.15 -39.45 -0.36 -1.72 16 22 C -0.17 -1.78 5.69 -90.62 -0.52 -2.30 16 23 C -0.17 -1.90 9.73 -26.74 -0.26 -2.16 16 24 C -0.18 -2.23 9.82 -26.73 -0.26 -2.49 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.10 1.66 8.14 -51.91 -0.42 1.23 16 28 H 0.40 3.76 6.95 -40.82 -0.28 3.48 16 29 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 32 H 0.14 0.90 7.01 -52.48 -0.37 0.53 16 33 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.10 1.13 6.67 -51.93 -0.35 0.78 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.12 1.97 5.02 -51.93 -0.26 1.70 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -33.08 324.90 -8.42 -41.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.60 Total: 4.49 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.52 Total: -13.09 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.44 Total: -39.34 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.08 -8.42 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890920129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds