Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99633 * 2 1 4 4 H 1.48502 * 109.47474 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47416 * 30.00430 * 3 2 1 6 6 H 1.48508 * 109.46890 * 150.00431 * 3 2 1 7 7 C 1.38803 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99474 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00016 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99922 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99749 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99783 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47254 * 324.99447 * 14 13 11 16 16 C 1.50703 * 109.46682 * 204.99680 * 14 13 11 17 17 C 1.38654 * 120.78409 * 139.99839 * 16 14 13 18 18 C 1.38209 * 119.15786 * 180.02562 * 17 16 14 19 19 N 1.31870 * 120.76375 * 0.26353 * 18 17 16 20 20 C 1.31872 * 121.72489 * 359.46946 * 19 18 17 21 21 C 1.38200 * 120.76402 * 0.52682 * 20 19 18 22 22 C 1.53000 * 109.47139 * 84.99789 * 14 13 11 23 23 C 1.52995 * 117.50070 * 8.62094 * 22 14 13 24 24 C 1.52996 * 60.00229 * 252.50986 * 23 22 14 25 25 H 0.97000 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47417 * 59.99317 * 10 9 7 27 27 H 1.09002 * 109.46804 * 299.99828 * 10 9 7 28 28 H 0.96999 * 120.00307 * 359.97438 * 13 11 10 29 29 H 1.07995 * 120.42251 * 0.04566 * 17 16 14 30 30 H 1.08002 * 119.61346 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.61160 * 180.27376 * 20 19 18 32 32 H 1.08003 * 120.41583 * 179.72635 * 21 20 19 33 33 H 1.08998 * 115.54447 * 154.32546 * 22 14 13 34 34 H 1.09005 * 117.49671 * 0.02562 * 23 22 14 35 35 H 1.09000 * 117.50090 * 145.01937 * 23 22 14 36 36 H 1.08995 * 117.49735 * 252.51475 * 24 23 22 37 37 H 1.08997 * 117.51796 * 107.47648 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2323 -0.0021 12 8 6.3441 -2.2960 -0.0035 13 7 6.0458 -4.4945 -0.0016 14 6 7.4910 -4.7354 -0.0033 15 1 7.9870 -3.9655 -0.5941 16 6 7.7738 -6.0888 -0.6029 17 6 8.8533 -6.2771 -1.4523 18 6 9.0811 -7.5325 -1.9837 19 7 8.2831 -8.5420 -1.6953 20 6 7.2504 -8.4007 -0.8875 21 6 6.9603 -7.1750 -0.3187 22 6 8.0166 -4.6940 1.4330 23 6 6.9852 -4.6278 2.5611 24 6 7.8243 -3.3951 2.2185 25 1 -0.4851 0.8400 0.0004 26 1 3.6434 -3.4317 -0.8905 27 1 3.6442 -3.4312 0.8894 28 1 5.4293 -5.2433 -0.0001 29 1 9.5081 -5.4534 -1.6954 30 1 9.9196 -7.6874 -2.6465 31 1 6.6217 -9.2518 -0.6712 32 1 6.1105 -7.0646 0.3386 33 1 8.9280 -5.2630 1.6166 34 1 5.9321 -4.6142 2.2801 35 1 7.2179 -5.1534 3.4872 36 1 8.6090 -3.1099 2.9191 37 1 7.3236 -2.5701 1.7118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890920129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = 6.689907 kcal Electronic energy + Delta-G solvation = -20345.188036 eV Core-core repulsion = 17213.816037 eV Total energy + Delta-G solvation = -3131.371999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76316 -40.60477 -38.23409 -35.46929 -34.67655 -33.60223 -32.13017 -30.97293 -28.10063 -27.73492 -24.53791 -23.57061 -23.17988 -22.25356 -20.97106 -19.96186 -18.45461 -17.94357 -17.48994 -17.11755 -16.97667 -16.60416 -16.29322 -15.87071 -15.67578 -15.15999 -14.90498 -14.74081 -14.49244 -14.43472 -13.77669 -13.55582 -13.34355 -13.07198 -13.02174 -12.64309 -12.56533 -12.34029 -11.87912 -11.48966 -11.17499 -11.10937 -10.93832 -10.61210 -10.53978 -10.47310 -10.12044 -10.07262 -8.99102 -8.51966 -6.22343 0.18882 0.20324 0.98153 1.31239 1.45988 1.51082 1.54764 2.13622 2.24595 2.69633 2.81544 2.86574 2.91916 3.32909 3.61570 3.77470 3.83397 3.89374 4.07593 4.13239 4.16208 4.20807 4.23907 4.39372 4.46478 4.57257 4.69749 4.81393 4.89343 4.95898 5.00617 5.16153 5.24539 5.36523 5.45866 5.70207 5.75478 6.11270 6.37307 6.93323 7.03008 7.13336 8.60557 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.003564 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.336135 B = 7854.971114 C = 8275.434870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.168 6.168 10 C -0.114 4.114 11 C 0.541 3.459 12 O -0.544 6.544 13 N -0.708 5.708 14 C 0.221 3.779 15 H 0.090 0.910 16 C -0.047 4.047 17 C -0.164 4.164 18 C 0.094 3.906 19 N -0.512 5.512 20 C 0.094 3.906 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.199 4.199 25 H 0.277 0.723 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.414 0.586 29 H 0.152 0.848 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.342 -16.489 0.995 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.059 5.941 10 C -0.265 4.265 11 C 0.327 3.673 12 O -0.422 6.422 13 N -0.363 5.363 14 C 0.116 3.884 15 H 0.108 0.892 16 C -0.056 4.056 17 C -0.184 4.184 18 C -0.063 4.063 19 N -0.221 5.221 20 C -0.062 4.062 21 C -0.182 4.182 22 C -0.173 4.173 23 C -0.204 4.204 24 C -0.236 4.236 25 H 0.086 0.914 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.252 0.748 29 H 0.170 0.830 30 H 0.195 0.805 31 H 0.195 0.805 32 H 0.169 0.831 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.607 -15.675 0.619 25.110 hybrid contribution -1.718 0.300 0.337 1.776 sum 17.888 -15.375 0.956 23.607 Atomic orbital electron populations 1.70014 1.07367 1.29031 1.49186 1.25563 0.95244 1.02266 0.92899 0.85875 0.80744 0.79609 0.80193 1.18753 1.18457 1.15870 1.22479 0.90455 0.96629 1.58205 0.92037 1.84665 1.06165 1.05707 1.97567 1.23277 0.95887 0.99963 1.07351 1.19853 0.89325 0.83182 0.74937 1.90654 1.58840 1.43487 1.49187 1.45853 1.07617 1.07173 1.75608 1.19230 0.80676 0.93604 0.94895 0.89243 1.20201 0.95498 0.94403 0.95454 1.22247 0.98510 0.99955 0.97667 1.23151 0.97917 0.88010 0.97176 1.67720 1.05362 1.34696 1.14327 1.23159 0.93792 0.97485 0.91799 1.22135 1.01271 0.93185 1.01634 1.22630 1.01545 1.02049 0.91050 1.22983 0.96905 1.01404 0.99100 1.23288 1.03888 0.92716 1.03724 0.91380 0.87131 0.86840 0.74789 0.83047 0.80509 0.80549 0.83062 0.85708 0.89279 0.87388 0.88246 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.97 21.65 0.30 -55.23 16 2 C 0.05 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 4 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.23 -11.32 6.74 99.48 0.67 -10.65 16 7 C -0.53 -30.35 10.04 67.96 0.68 -29.67 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.18 18.55 -56.49 -1.05 -9.23 16 10 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 11 C 0.54 16.98 6.68 87.66 0.59 17.57 16 12 O -0.54 -21.00 12.89 -3.04 -0.04 -21.04 16 13 N -0.71 -15.27 3.58 -446.08 -1.59 -16.87 16 14 C 0.22 4.32 2.67 44.24 0.12 4.43 16 15 H 0.09 2.09 7.48 -2.39 -0.02 2.07 16 16 C -0.05 -0.75 4.96 -19.67 -0.10 -0.85 16 17 C -0.16 -2.41 9.78 22.36 0.22 -2.19 16 18 C 0.09 1.41 11.18 84.68 0.95 2.36 16 19 N -0.51 -9.27 10.36 -195.84 -2.03 -11.30 16 20 C 0.09 1.39 11.18 84.68 0.95 2.33 16 21 C -0.16 -2.25 9.15 22.36 0.20 -2.05 16 22 C -0.15 -2.88 5.69 -10.79 -0.06 -2.95 16 23 C -0.17 -3.30 9.73 30.59 0.30 -3.00 16 24 C -0.20 -4.80 9.82 30.59 0.30 -4.50 16 25 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 27 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 28 H 0.41 6.69 6.95 -92.71 -0.64 6.04 16 29 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.15 1.50 7.01 -2.91 -0.02 1.48 16 33 H 0.13 1.96 8.11 -2.39 -0.02 1.94 16 34 H 0.09 1.89 6.67 -2.38 -0.02 1.88 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.88 5.02 -2.39 -0.01 2.87 16 Total: -1.00 -72.01 324.90 2.95 -69.06 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.41 Total: 17.31 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.05 Total: -19.02 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.32 Total: -83.40 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.04 Total: -21.04 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.05 Total: -9.23 kcal Total: -72.01 2.95 -69.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890920129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.745 kcal (2) G-P(sol) polarization free energy of solvation -72.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds