Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99777 * 2 1 4 4 H 1.48501 * 109.47322 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47416 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47015 * 119.99733 * 3 2 1 7 7 C 1.38895 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99640 * 142.27133 * 7 2 1 9 9 N 1.37208 * 119.99779 * 322.26696 * 7 2 1 10 10 C 1.34772 * 120.00319 * 305.49310 * 9 7 2 11 11 O 1.21267 * 120.00046 * 4.56283 * 10 9 7 12 12 C 1.50705 * 120.00082 * 184.56234 * 10 9 7 13 13 C 1.52585 * 109.22433 * 240.40115 * 12 10 9 14 14 C 1.53096 * 109.95273 * 169.00131 * 13 12 10 15 15 S 1.81753 * 108.83807 * 63.02786 * 14 13 12 16 16 C 1.81743 * 102.22100 * 306.73100 * 15 14 13 17 17 C 1.52581 * 109.22509 * 119.16906 * 12 10 9 18 18 C 1.39427 * 119.99984 * 125.49747 * 9 7 2 19 19 C 1.39076 * 119.69444 * 294.84413 * 18 9 7 20 20 C 1.38376 * 119.09668 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49517 * 359.97438 * 20 19 18 22 22 C 1.38152 * 119.31184 * 0.25163 * 21 20 19 23 23 N 1.31888 * 120.84888 * 359.47759 * 22 21 20 24 24 H 0.97001 * 120.00266 * 5.02159 * 1 2 3 25 25 H 1.08994 * 109.22509 * 359.76553 * 12 10 9 26 26 H 1.08995 * 109.39356 * 289.15193 * 13 12 10 27 27 H 1.09000 * 109.38837 * 48.85697 * 13 12 10 28 28 H 1.09001 * 109.57873 * 303.22126 * 14 13 12 29 29 H 1.09001 * 109.57787 * 182.82898 * 14 13 12 30 30 H 1.08991 * 109.57944 * 293.45915 * 16 15 14 31 31 H 1.09009 * 109.57404 * 173.06725 * 16 15 14 32 32 H 1.09004 * 109.39022 * 311.14642 * 17 12 10 33 33 H 1.08999 * 109.39147 * 70.84742 * 17 12 10 34 34 H 1.07995 * 120.44863 * 0.03673 * 19 18 9 35 35 H 1.07999 * 120.75274 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.35070 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.57689 * 179.74840 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0086 -1.2029 0.0005 8 1 2.9192 -1.3008 -0.5717 9 7 1.5378 -2.2665 0.7282 10 6 1.2846 -2.1235 2.0442 11 8 1.3936 -1.0351 2.5679 12 6 0.8661 -3.3161 2.8650 13 6 -0.5150 -3.0571 3.4596 14 6 -1.0740 -4.3478 4.0641 15 16 0.0048 -4.8714 5.4300 16 6 1.6399 -4.9056 4.6374 17 6 1.8934 -3.5521 3.9683 18 6 1.3212 -3.4954 0.1063 19 6 0.3403 -3.6086 -0.8732 20 6 0.1355 -4.8342 -1.4820 21 6 0.9222 -5.9085 -1.0892 22 6 1.8753 -5.7252 -0.1061 23 7 2.0516 -4.5438 0.4530 24 1 -0.4850 0.8368 -0.0735 25 1 0.8206 -4.1956 2.2229 26 1 -0.4376 -2.2972 4.2372 27 1 -1.1858 -2.7042 2.6763 28 1 -1.1017 -5.1262 3.3016 29 1 -2.0805 -4.1681 4.4421 30 1 1.6652 -5.6948 3.8861 31 1 2.4067 -5.0903 5.3898 32 1 2.8949 -3.5429 3.5383 33 1 1.8135 -2.7598 4.7127 34 1 -0.2533 -2.7515 -1.1548 35 1 -0.6186 -4.9521 -2.2460 36 1 0.7875 -6.8787 -1.5442 37 1 2.4868 -6.5590 0.2056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892465237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = 9.769075 kcal Electronic energy + Delta-G solvation = -21983.759386 eV Core-core repulsion = 18852.520909 eV Total energy + Delta-G solvation = -3131.238476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09387 -38.45634 -35.88571 -34.37663 -32.32897 -31.70634 -31.29654 -29.24873 -27.74095 -24.90614 -23.02795 -22.78209 -22.60470 -21.04417 -19.18371 -17.69868 -16.79696 -16.61285 -15.95516 -15.50334 -14.81327 -14.45350 -14.40022 -14.20286 -13.52405 -13.48607 -13.44809 -13.06487 -12.88250 -12.66649 -12.56912 -12.07787 -12.00967 -11.68859 -11.28075 -11.19315 -11.05430 -10.77534 -10.54580 -10.40123 -10.04632 -9.60793 -9.31494 -9.06806 -8.88104 -8.67098 -8.31681 -7.53552 -7.41429 -6.52614 -4.18428 1.67195 1.83589 1.95932 2.68689 3.20793 3.29827 3.41002 3.81561 4.01344 4.36013 4.50736 4.79382 4.95011 4.99559 5.16122 5.21504 5.25427 5.33226 5.47360 5.53555 5.57211 5.66195 5.81121 5.82575 5.87757 5.98723 6.18217 6.22259 6.30491 6.37952 6.53231 6.62596 6.67722 6.76011 7.20049 7.44754 8.13360 8.48881 8.76246 8.84849 9.29883 9.89719 10.52620 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.007502 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.711495 B = 3731.597935 C = 5047.204012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.101 3.899 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.397 5.397 10 C 0.513 3.487 11 O -0.534 6.534 12 C -0.111 4.111 13 C -0.107 4.107 14 C -0.071 4.071 15 S -0.284 6.284 16 C -0.070 4.070 17 C -0.099 4.099 18 C 0.362 3.638 19 C -0.160 4.160 20 C -0.074 4.074 21 C -0.212 4.212 22 C 0.106 3.894 23 N -0.511 5.511 24 H 0.273 0.727 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -11.001 1.694 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.114 4.114 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.500 4.500 8 H 0.101 0.899 9 N -0.116 5.116 10 C 0.301 3.699 11 O -0.410 6.410 12 C -0.133 4.133 13 C -0.147 4.147 14 C -0.220 4.220 15 S -0.059 6.059 16 C -0.218 4.218 17 C -0.138 4.138 18 C 0.137 3.863 19 C -0.182 4.182 20 C -0.100 4.100 21 C -0.233 4.233 22 C -0.052 4.052 23 N -0.225 5.225 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.405 -10.385 3.759 11.134 hybrid contribution -0.038 0.821 -2.229 2.376 sum -1.443 -9.564 1.530 9.792 Atomic orbital electron populations 1.70004 1.07510 1.28885 1.38718 1.25355 0.94294 1.00356 0.91368 0.86303 0.80139 0.80673 0.79167 1.20089 1.21113 1.18999 1.18830 1.07910 0.87955 1.35295 0.89927 1.40940 1.58884 1.05769 1.05993 1.20212 0.78954 0.89022 0.81714 1.90522 1.52615 1.27769 1.70123 1.21250 0.95421 0.99239 0.97421 1.21587 0.95625 0.96199 1.01247 1.23426 1.00153 1.00413 0.97966 1.86574 1.06371 1.90095 1.22844 1.23424 0.95041 1.00946 1.02418 1.21464 0.99455 0.95558 0.97325 1.19211 0.88673 0.86599 0.91854 1.22235 0.98565 0.98510 0.98914 1.21425 0.98075 0.92577 0.97933 1.21858 1.00404 0.99641 1.01406 1.22392 0.95841 0.94021 0.92994 1.67506 1.25250 0.99872 1.29911 0.91742 0.89568 0.89980 0.90576 0.90152 0.87948 0.89842 0.87964 0.90319 0.90238 0.83896 0.85673 0.85879 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.37 13.83 55.49 0.77 -21.60 16 2 C 0.10 2.73 3.98 -17.49 -0.07 2.66 16 3 Si 0.91 21.56 29.68 -169.99 -5.05 16.51 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.38 -10.23 8.62 -14.90 -0.13 -10.36 16 8 H 0.08 2.26 8.04 -52.49 -0.42 1.84 16 9 N -0.40 -10.00 2.60 -60.71 -0.16 -10.16 16 10 C 0.51 12.64 6.10 -10.99 -0.07 12.57 16 11 O -0.53 -14.97 15.87 5.57 0.09 -14.88 16 12 C -0.11 -2.16 1.87 -92.20 -0.17 -2.33 16 13 C -0.11 -1.91 4.95 -26.89 -0.13 -2.04 16 14 C -0.07 -1.03 6.45 37.21 0.24 -0.79 16 15 S -0.28 -4.16 22.33 -107.50 -2.40 -6.57 16 16 C -0.07 -0.99 6.45 37.21 0.24 -0.75 16 17 C -0.10 -1.70 4.95 -26.90 -0.13 -1.84 16 18 C 0.36 7.92 5.01 -154.64 -0.77 7.14 16 19 C -0.16 -3.18 9.80 -39.22 -0.38 -3.57 16 20 C -0.07 -1.15 10.17 -39.31 -0.40 -1.55 16 21 C -0.21 -2.97 10.11 -39.40 -0.40 -3.37 16 22 C 0.11 1.64 11.18 -17.56 -0.20 1.44 16 23 N -0.51 -9.98 8.85 -12.34 -0.11 -10.09 16 24 H 0.27 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.09 1.66 5.33 -51.93 -0.28 1.39 16 26 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 27 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 33 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 34 H 0.14 3.12 8.06 -52.49 -0.42 2.70 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -30.34 322.88 -9.26 -39.60 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.89 Total: 5.10 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.38 Total: -2.79 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.50 Total: -41.85 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.09 Total: -14.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.05 Total: 16.51 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.40 Total: -6.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.34 -9.26 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.368 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds