Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99777 * 2 1 4 4 H 1.48501 * 109.47322 * 239.99911 * 3 2 1 5 5 H 1.48500 * 109.47416 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47015 * 119.99733 * 3 2 1 7 7 C 1.38895 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99640 * 142.27133 * 7 2 1 9 9 N 1.37208 * 119.99779 * 322.26696 * 7 2 1 10 10 C 1.34772 * 120.00319 * 305.49310 * 9 7 2 11 11 O 1.21267 * 120.00046 * 4.56283 * 10 9 7 12 12 C 1.50705 * 120.00082 * 184.56234 * 10 9 7 13 13 C 1.52585 * 109.22433 * 240.40115 * 12 10 9 14 14 C 1.53096 * 109.95273 * 169.00131 * 13 12 10 15 15 S 1.81753 * 108.83807 * 63.02786 * 14 13 12 16 16 C 1.81743 * 102.22100 * 306.73100 * 15 14 13 17 17 C 1.52581 * 109.22509 * 119.16906 * 12 10 9 18 18 C 1.39427 * 119.99984 * 125.49747 * 9 7 2 19 19 C 1.39076 * 119.69444 * 294.84413 * 18 9 7 20 20 C 1.38376 * 119.09668 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49517 * 359.97438 * 20 19 18 22 22 C 1.38152 * 119.31184 * 0.25163 * 21 20 19 23 23 N 1.31888 * 120.84888 * 359.47759 * 22 21 20 24 24 H 0.97001 * 120.00266 * 5.02159 * 1 2 3 25 25 H 1.08994 * 109.22509 * 359.76553 * 12 10 9 26 26 H 1.08995 * 109.39356 * 289.15193 * 13 12 10 27 27 H 1.09000 * 109.38837 * 48.85697 * 13 12 10 28 28 H 1.09001 * 109.57873 * 303.22126 * 14 13 12 29 29 H 1.09001 * 109.57787 * 182.82898 * 14 13 12 30 30 H 1.08991 * 109.57944 * 293.45915 * 16 15 14 31 31 H 1.09009 * 109.57404 * 173.06725 * 16 15 14 32 32 H 1.09004 * 109.39022 * 311.14642 * 17 12 10 33 33 H 1.08999 * 109.39147 * 70.84742 * 17 12 10 34 34 H 1.07995 * 120.44863 * 0.03673 * 19 18 9 35 35 H 1.07999 * 120.75274 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.35070 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.57689 * 179.74840 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0086 -1.2029 0.0005 8 1 2.9192 -1.3008 -0.5717 9 7 1.5378 -2.2665 0.7282 10 6 1.2846 -2.1235 2.0442 11 8 1.3936 -1.0351 2.5679 12 6 0.8661 -3.3161 2.8650 13 6 -0.5150 -3.0571 3.4596 14 6 -1.0740 -4.3478 4.0641 15 16 0.0048 -4.8714 5.4300 16 6 1.6399 -4.9056 4.6374 17 6 1.8934 -3.5521 3.9683 18 6 1.3212 -3.4954 0.1063 19 6 0.3403 -3.6086 -0.8732 20 6 0.1355 -4.8342 -1.4820 21 6 0.9222 -5.9085 -1.0892 22 6 1.8753 -5.7252 -0.1061 23 7 2.0516 -4.5438 0.4530 24 1 -0.4850 0.8368 -0.0735 25 1 0.8206 -4.1956 2.2229 26 1 -0.4376 -2.2972 4.2372 27 1 -1.1858 -2.7042 2.6763 28 1 -1.1017 -5.1262 3.3016 29 1 -2.0805 -4.1681 4.4421 30 1 1.6652 -5.6948 3.8861 31 1 2.4067 -5.0903 5.3898 32 1 2.8949 -3.5429 3.5383 33 1 1.8135 -2.7598 4.7127 34 1 -0.2533 -2.7515 -1.1548 35 1 -0.6186 -4.9521 -2.2460 36 1 0.7875 -6.8787 -1.5442 37 1 2.4868 -6.5590 0.2056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892465237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = -7.489010 kcal Electronic energy + Delta-G solvation = -21984.507752 eV Core-core repulsion = 18852.520909 eV Total energy + Delta-G solvation = -3131.986843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68662 -40.05437 -37.44691 -36.20194 -34.19017 -33.16805 -32.58690 -30.75008 -29.24270 -26.74863 -24.45099 -24.12645 -24.01974 -22.62486 -20.83682 -19.48410 -18.47927 -17.90644 -17.46185 -16.94087 -16.58700 -16.18449 -15.80339 -15.68177 -15.13574 -14.98675 -14.79240 -14.56358 -14.25281 -13.93917 -13.83734 -13.83354 -13.58731 -13.33337 -13.07027 -12.77459 -12.61985 -12.49135 -12.25209 -12.00975 -11.42988 -10.96200 -10.81765 -10.66243 -10.56608 -10.38151 -9.96845 -9.21536 -8.68976 -8.54074 -6.24865 0.28764 0.49825 0.80073 1.27208 1.38285 1.46354 1.51349 1.98569 2.17881 2.72137 2.87186 3.04512 3.41447 3.59129 3.84672 3.91293 3.99015 4.15824 4.17698 4.19600 4.34920 4.39452 4.43291 4.44478 4.59183 4.68690 4.72182 4.81937 4.89808 5.03096 5.07226 5.17249 5.32251 5.36441 5.42715 5.84539 6.14005 6.75246 6.88305 7.19377 7.38511 8.01380 8.51565 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.007502 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.711495 B = 3731.597935 C = 5047.204012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.066 3.934 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.400 4.400 8 H 0.068 0.932 9 N -0.410 5.410 10 C 0.497 3.503 11 O -0.587 6.587 12 C -0.097 4.097 13 C -0.102 4.102 14 C -0.063 4.063 15 S -0.280 6.280 16 C -0.061 4.061 17 C -0.093 4.093 18 C 0.329 3.671 19 C -0.182 4.182 20 C -0.063 4.063 21 C -0.181 4.181 22 C 0.103 3.897 23 N -0.528 5.528 24 H 0.274 0.726 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -14.806 1.205 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.146 4.146 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.525 4.525 8 H 0.085 0.915 9 N -0.128 5.128 10 C 0.287 3.713 11 O -0.468 6.468 12 C -0.119 4.119 13 C -0.141 4.141 14 C -0.211 4.211 15 S -0.054 6.054 16 C -0.209 4.209 17 C -0.133 4.133 18 C 0.105 3.895 19 C -0.205 4.205 20 C -0.089 4.089 21 C -0.201 4.201 22 C -0.056 4.056 23 N -0.242 5.242 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.590 -14.229 3.226 14.676 hybrid contribution 0.046 1.757 -2.161 2.785 sum -1.544 -12.472 1.065 12.612 Atomic orbital electron populations 1.70039 1.08382 1.29282 1.40172 1.25962 0.94896 1.02553 0.91163 0.85586 0.79298 0.78116 0.78825 1.17922 1.19948 1.21225 1.18811 1.08035 0.89989 1.35629 0.91467 1.40996 1.58805 1.06784 1.06242 1.21092 0.78256 0.89969 0.81976 1.90461 1.55196 1.29935 1.71218 1.21179 0.96644 0.96769 0.97315 1.21500 0.94572 0.97907 1.00143 1.23372 1.00980 0.98475 0.98264 1.86614 1.06359 1.89678 1.22785 1.23399 0.95595 0.98757 1.03122 1.21400 0.98195 0.97386 0.96315 1.19105 0.90778 0.86437 0.93144 1.22090 0.98879 0.99675 0.99857 1.21826 0.98570 0.90927 0.97612 1.22428 0.97470 1.00991 0.99183 1.23228 0.96311 0.93387 0.92640 1.67452 1.25307 1.00656 1.30788 0.91671 0.88986 0.91626 0.92673 0.88841 0.85930 0.88491 0.85574 0.91416 0.91732 0.87171 0.82130 0.80620 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.77 13.83 21.65 0.30 -48.47 16 2 C 0.07 3.76 3.98 84.91 0.34 4.10 16 3 Si 0.96 46.14 29.68 68.60 2.04 48.17 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 7 C -0.40 -23.09 8.62 84.01 0.72 -22.37 16 8 H 0.07 3.94 8.04 -2.91 -0.02 3.91 16 9 N -0.41 -21.74 2.60 -464.38 -1.21 -22.95 16 10 C 0.50 25.89 6.10 87.66 0.53 26.42 16 11 O -0.59 -35.22 15.87 -2.99 -0.05 -35.27 16 12 C -0.10 -3.86 1.87 -11.82 -0.02 -3.89 16 13 C -0.10 -3.70 4.95 30.49 0.15 -3.55 16 14 C -0.06 -1.71 6.45 72.01 0.46 -1.25 16 15 S -0.28 -7.55 22.33 -56.49 -1.26 -8.81 16 16 C -0.06 -1.58 6.45 72.01 0.46 -1.11 16 17 C -0.09 -3.24 4.95 30.49 0.15 -3.09 16 18 C 0.33 14.63 5.01 132.91 0.67 15.30 16 19 C -0.18 -7.33 9.80 22.50 0.22 -7.11 16 20 C -0.06 -1.76 10.17 22.44 0.23 -1.53 16 21 C -0.18 -4.05 10.11 22.39 0.23 -3.82 16 22 C 0.10 2.73 11.18 84.66 0.95 3.67 16 23 N -0.53 -19.90 8.85 -192.94 -1.71 -21.61 16 24 H 0.27 14.85 8.32 -92.71 -0.77 14.08 16 25 H 0.09 3.52 5.33 -2.39 -0.01 3.51 16 26 H 0.06 2.58 8.06 -2.39 -0.02 2.56 16 27 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 32 H 0.07 2.47 8.08 -2.38 -0.02 2.45 16 33 H 0.06 2.41 8.06 -2.39 -0.02 2.39 16 34 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 35 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -72.67 322.88 4.27 -68.40 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.07 Total: 18.76 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.09 Total: 1.77 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -2.62 Total: -93.03 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.27 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.04 Total: 48.17 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.26 Total: -8.81 kcal Total: -72.67 4.27 -68.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.912 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds