Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00123 * 2 1 4 4 H 1.48502 * 109.46811 * 269.99287 * 3 2 1 5 5 H 1.48491 * 109.47335 * 29.99468 * 3 2 1 6 6 H 1.48497 * 109.47176 * 149.99660 * 3 2 1 7 7 C 1.38896 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00014 * 174.93958 * 7 2 1 9 9 N 1.37215 * 119.99598 * 354.94216 * 7 2 1 10 10 C 1.34774 * 120.00026 * 187.96201 * 9 7 2 11 11 O 1.21271 * 120.00356 * 184.22413 * 10 9 7 12 12 C 1.50703 * 119.99596 * 4.21884 * 10 9 7 13 13 H 1.08997 * 109.57616 * 334.99808 * 12 10 9 14 14 C 1.53100 * 109.57315 * 214.74288 * 12 10 9 15 15 C 1.52565 * 109.96385 * 177.30246 * 14 12 10 16 16 C 1.52582 * 110.84452 * 70.48486 * 15 14 12 17 17 C 1.53102 * 109.95338 * 289.37307 * 16 15 14 18 18 S 1.81744 * 109.57504 * 95.25961 * 12 10 9 19 19 C 1.39427 * 119.99889 * 7.96661 * 9 7 2 20 20 C 1.39062 * 119.70217 * 86.96899 * 19 9 7 21 21 C 1.38375 * 119.10195 * 180.22618 * 20 19 9 22 22 C 1.38828 * 118.49182 * 359.52409 * 21 20 19 23 23 C 1.38150 * 119.31206 * 0.25296 * 22 21 20 24 24 N 1.31888 * 120.84735 * 359.97438 * 23 22 21 25 25 H 0.97006 * 120.00093 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.39084 * 297.31583 * 14 12 10 27 27 H 1.08998 * 109.39346 * 57.02353 * 14 12 10 28 28 H 1.09003 * 109.13413 * 310.15097 * 15 14 12 29 29 H 1.08999 * 109.17567 * 190.84026 * 15 14 12 30 30 H 1.08994 * 109.39402 * 169.22522 * 16 15 14 31 31 H 1.09000 * 109.39099 * 49.51247 * 16 15 14 32 32 H 1.08999 * 109.57289 * 303.21219 * 17 16 15 33 33 H 1.09000 * 109.57515 * 182.82729 * 17 16 15 34 34 H 1.08004 * 120.45055 * 0.02735 * 20 19 9 35 35 H 1.07997 * 120.75567 * 179.80093 * 21 20 19 36 36 H 1.08002 * 120.34924 * 180.22760 * 22 21 20 37 37 H 1.07991 * 119.58017 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0086 -1.2028 0.0005 8 1 3.0854 -1.2047 -0.0820 9 7 1.3265 -2.3888 0.1058 10 6 2.0029 -3.5432 0.2679 11 8 1.4060 -4.5987 0.2841 12 6 3.5012 -3.5222 0.4288 13 1 3.9057 -2.6223 -0.0343 14 6 4.1062 -4.7595 -0.2398 15 6 5.6279 -4.7136 -0.1405 16 6 6.0853 -4.9423 1.2971 17 6 5.7316 -3.7263 2.1575 18 16 3.9241 -3.5404 2.1963 19 6 -0.0664 -2.3996 0.0451 20 6 -0.7017 -2.4785 -1.1895 21 6 -2.0847 -2.4835 -1.2356 22 6 -2.7874 -2.4194 -0.0400 23 6 -2.0909 -2.3476 1.1509 24 7 -0.7721 -2.3399 1.1636 25 1 -0.4850 0.8401 -0.0004 26 1 3.7398 -5.6564 0.2597 27 1 3.8108 -4.7850 -1.2887 28 1 5.9788 -3.7384 -0.4780 29 1 6.0519 -5.4883 -0.7794 30 1 7.1643 -5.0956 1.3136 31 1 5.5893 -5.8260 1.6985 32 1 6.1817 -2.8314 1.7277 33 1 6.1053 -3.8747 3.1707 34 1 -0.1235 -2.5317 -2.1001 35 1 -2.6055 -2.5407 -2.1799 36 1 -3.8674 -2.4252 -0.0409 37 1 -2.6332 -2.2972 2.0834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892469558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -4.535219 kcal Electronic energy + Delta-G solvation = -21629.986821 eV Core-core repulsion = 18498.128064 eV Total energy + Delta-G solvation = -3131.858757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50379 -39.80457 -37.50085 -36.77525 -33.66169 -33.02315 -32.72868 -30.95143 -28.50510 -27.03554 -25.12333 -24.10800 -23.41583 -21.60919 -21.25938 -19.90864 -18.39732 -17.78804 -17.28597 -17.04722 -16.56542 -16.24664 -15.91511 -15.64093 -15.19049 -14.89815 -14.69135 -14.45010 -14.12120 -13.89513 -13.81724 -13.43102 -13.38044 -12.95408 -12.88630 -12.59519 -12.42046 -12.17788 -12.11572 -11.78655 -11.57482 -11.53062 -10.78959 -10.50251 -10.44274 -10.30459 -9.80521 -9.66358 -8.63950 -8.20199 -6.03036 0.44071 0.62176 0.78399 1.39864 1.43633 1.54727 1.62713 2.08125 2.18082 2.59462 3.13801 3.24815 3.72057 3.78658 3.92141 3.99613 4.06870 4.18327 4.20391 4.25008 4.47987 4.51117 4.58846 4.66995 4.73978 4.80052 4.96976 5.05710 5.06297 5.09910 5.15802 5.32561 5.39036 5.42740 5.47929 5.64722 6.04707 6.40838 6.99074 7.33525 7.51741 7.78347 8.65451 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.006795 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.133766 B = 4119.757715 C = 5172.523353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C -0.006 4.006 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.353 4.353 8 H 0.120 0.880 9 N -0.411 5.411 10 C 0.477 3.523 11 O -0.619 6.619 12 C -0.042 4.042 13 H 0.109 0.891 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.072 4.072 18 S -0.294 6.294 19 C 0.434 3.566 20 C -0.174 4.174 21 C -0.069 4.069 22 C -0.195 4.195 23 C 0.097 3.903 24 N -0.525 5.525 25 H 0.270 0.730 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -3.044 -1.930 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.137 0.863 9 N -0.128 5.128 10 C 0.266 3.734 11 O -0.505 6.505 12 C -0.173 4.173 13 H 0.127 0.873 14 C -0.139 4.139 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.220 4.220 18 S -0.068 6.068 19 C 0.209 3.791 20 C -0.196 4.196 21 C -0.095 4.095 22 C -0.215 4.215 23 C -0.061 4.061 24 N -0.238 5.238 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.867 -3.238 -0.233 7.596 hybrid contribution 0.146 1.034 -1.621 1.928 sum 7.012 -2.204 -1.854 7.581 Atomic orbital electron populations 1.69675 1.07039 1.27839 1.47029 1.26173 0.96511 1.02936 0.95254 0.84833 0.78231 0.76141 0.78665 1.19129 1.21299 1.18121 1.20129 0.93290 0.81942 1.52527 0.86254 1.41468 1.02541 1.07262 1.61577 1.19938 0.89510 0.82748 0.81207 1.90521 1.70875 1.31539 1.57609 1.23025 0.94314 1.04111 0.95820 0.87260 1.21587 0.97132 0.95036 1.00192 1.21535 0.92403 1.03871 0.97994 1.21722 1.03258 0.96568 0.93969 1.23662 0.89941 1.02657 1.05742 1.87408 1.12471 1.97084 1.09826 1.17661 0.84224 0.88392 0.88839 1.21698 0.96435 1.04554 0.96947 1.21554 0.92397 0.95702 0.99812 1.22135 1.01941 1.04796 0.92622 1.22729 0.88679 0.95526 0.99191 1.67054 1.09947 1.13875 1.32920 0.91850 0.91893 0.91373 0.90863 0.88584 0.87327 0.91496 0.88659 0.85917 0.87496 0.82533 0.81887 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.14 9.79 21.65 0.21 -46.93 16 2 C -0.01 -0.30 5.45 84.91 0.46 0.16 16 3 Si 1.00 40.32 29.56 68.60 2.03 42.34 16 4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.35 -18.34 9.33 84.01 0.78 -17.55 16 8 H 0.12 5.69 5.56 -2.91 -0.02 5.67 16 9 N -0.41 -22.37 2.74 -464.38 -1.27 -23.64 16 10 C 0.48 24.79 6.62 87.66 0.58 25.37 16 11 O -0.62 -35.63 16.31 -3.00 -0.05 -35.68 16 12 C -0.04 -1.71 2.44 29.88 0.07 -1.64 16 13 H 0.11 4.33 5.73 -2.39 -0.01 4.32 16 14 C -0.10 -3.33 4.66 30.48 0.14 -3.19 16 15 C -0.12 -2.73 5.60 30.31 0.17 -2.56 16 16 C -0.12 -2.36 5.75 30.49 0.18 -2.19 16 17 C -0.07 -1.75 6.45 72.02 0.46 -1.28 16 18 S -0.29 -11.41 21.69 -56.49 -1.23 -12.63 16 19 C 0.43 23.59 2.92 132.90 0.39 23.98 16 20 C -0.17 -8.44 9.31 22.50 0.21 -8.23 16 21 C -0.07 -2.69 10.17 22.44 0.23 -2.46 16 22 C -0.20 -7.20 10.11 22.39 0.23 -6.98 16 23 C 0.10 4.22 11.18 84.66 0.95 5.17 16 24 N -0.53 -28.37 9.85 -192.95 -1.90 -30.27 16 25 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 26 H 0.06 2.32 7.87 -2.38 -0.02 2.31 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 35 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.16 5.84 8.06 -2.92 -0.02 5.82 16 Total: -1.00 -73.34 317.78 3.72 -69.62 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.07 Total: 28.59 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 4.85 Total: 8.61 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -2.96 Total: -100.85 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.05 Total: -35.68 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: -11.41 SS G_CDS: -1.23 Total: -12.63 kcal Total: -73.34 3.72 -69.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.088 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds