Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48509 * 109.46916 * 274.01672 * 3 2 1 5 5 H 1.48501 * 109.47263 * 34.01338 * 3 2 1 6 6 H 1.48493 * 109.47023 * 154.01480 * 3 2 1 7 7 C 1.38893 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00092 * 24.10493 * 7 2 1 9 9 N 1.37217 * 119.99621 * 204.10226 * 7 2 1 10 10 C 1.34776 * 120.00209 * 227.96299 * 9 7 2 11 11 O 1.21269 * 119.99739 * 183.90792 * 10 9 7 12 12 C 1.50702 * 119.99896 * 3.90077 * 10 9 7 13 13 H 1.08998 * 109.38796 * 315.25599 * 12 10 9 14 14 C 1.52576 * 109.39155 * 195.45079 * 12 10 9 15 15 C 1.52574 * 110.72802 * 169.18025 * 14 12 10 16 16 C 1.53097 * 109.95973 * 70.67358 * 15 14 12 17 17 S 1.81751 * 108.84065 * 296.98116 * 16 15 14 18 18 C 1.53103 * 109.38491 * 75.05638 * 12 10 9 19 19 C 1.39431 * 119.99674 * 47.96543 * 9 7 2 20 20 C 1.39060 * 119.69905 * 33.30894 * 19 9 7 21 21 C 1.38386 * 119.09859 * 179.97438 * 20 19 9 22 22 C 1.38825 * 118.48976 * 359.97438 * 21 20 19 23 23 C 1.38146 * 119.31571 * 0.02562 * 22 21 20 24 24 N 1.31879 * 120.84788 * 359.97438 * 23 22 21 25 25 H 0.97010 * 119.99621 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.22462 * 289.50507 * 14 12 10 27 27 H 1.09002 * 109.22496 * 48.89924 * 14 12 10 28 28 H 1.08993 * 109.39186 * 190.82363 * 15 14 12 29 29 H 1.09004 * 109.39119 * 310.52836 * 15 14 12 30 30 H 1.09002 * 109.57614 * 56.78207 * 16 15 14 31 31 H 1.09001 * 109.58165 * 177.16967 * 16 15 14 32 32 H 1.08999 * 109.57834 * 302.97575 * 18 12 10 33 33 H 1.08999 * 109.57817 * 63.36666 * 18 12 10 34 34 H 1.08003 * 120.45454 * 0.25355 * 20 19 9 35 35 H 1.07999 * 120.75087 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.34240 * 180.02562 * 22 21 20 37 37 H 1.08000 * 119.57470 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4108 2.0954 -1.3967 5 1 1.4908 2.6267 0.7832 6 1 3.5856 1.4170 0.6134 7 6 2.0085 -1.2029 -0.0005 8 1 1.5391 -2.0972 -0.3829 9 7 3.2909 -1.2550 0.4847 10 6 4.2569 -1.8677 -0.2281 11 8 5.3736 -1.9760 0.2320 12 6 3.9490 -2.4183 -1.5967 13 1 3.0010 -2.9555 -1.5658 14 6 5.0598 -3.3750 -2.0195 15 6 4.6573 -4.1510 -3.2700 16 6 4.6426 -3.2166 -4.4827 17 16 3.3805 -1.9352 -4.2211 18 6 3.8469 -1.2642 -2.5976 19 6 3.5947 -0.6740 1.7153 20 6 2.6439 -0.6727 2.7301 21 6 2.9588 -0.0932 3.9466 22 6 4.2190 0.4667 4.1070 23 6 5.1144 0.4296 3.0556 24 7 4.7862 -0.1296 1.9073 25 1 -0.4850 0.8402 0.0004 26 1 5.9651 -2.8044 -2.2270 27 1 5.2561 -4.0775 -1.2095 28 1 5.3717 -4.9559 -3.4420 29 1 3.6633 -4.5754 -3.1282 30 1 5.6205 -2.7485 -4.5949 31 1 4.4035 -3.7869 -5.3803 32 1 3.0872 -0.5575 -2.2639 33 1 4.8101 -0.7596 -2.6726 34 1 1.6744 -1.1219 2.5724 35 1 2.2408 -0.0776 4.7532 36 1 4.4966 0.9264 5.0440 37 1 6.0960 0.8636 3.1759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = 10.929789 kcal Electronic energy + Delta-G solvation = -21878.695814 eV Core-core repulsion = 18747.507670 eV Total energy + Delta-G solvation = -3131.188144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21522 -38.58209 -35.98470 -35.08096 -32.35339 -31.67828 -31.43797 -29.34161 -26.92518 -25.32117 -24.09761 -22.74050 -22.21866 -20.69242 -19.11018 -18.10627 -16.95686 -16.04575 -15.88844 -15.48062 -15.12965 -14.95986 -14.35885 -14.02628 -13.82081 -13.75058 -13.24714 -13.07029 -12.98646 -12.65174 -12.45247 -12.38165 -12.08885 -11.37375 -11.18837 -11.12028 -11.10964 -10.96312 -10.62610 -10.49807 -10.14579 -9.67833 -9.48526 -9.06149 -9.00202 -8.86386 -8.40822 -7.47420 -7.37197 -6.73462 -4.44750 1.79688 2.01783 2.07113 2.78210 3.03498 3.15460 3.31632 3.56532 3.90132 4.08582 4.48594 4.83978 4.91935 4.98396 5.11694 5.21407 5.33355 5.41343 5.49053 5.58884 5.68990 5.72323 5.83675 5.92376 5.93285 5.97341 6.16887 6.20415 6.24572 6.48443 6.48659 6.59184 6.69649 6.86145 7.08311 7.46596 7.87816 8.04132 8.57419 8.80513 9.05768 9.46364 10.34038 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.006770 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.567200 B = 4134.838299 C = 4967.633284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.095 3.905 3 Si 0.830 3.170 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.233 1.233 7 C -0.367 4.367 8 H 0.112 0.888 9 N -0.408 5.408 10 C 0.504 3.496 11 O -0.536 6.536 12 C -0.085 4.085 13 H 0.109 0.891 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.085 4.085 17 S -0.265 6.265 18 C -0.058 4.058 19 C 0.371 3.629 20 C -0.180 4.180 21 C -0.069 4.069 22 C -0.228 4.228 23 C 0.115 3.885 24 N -0.491 5.491 25 H 0.280 0.720 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -2.898 -1.264 6.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.118 4.118 3 Si 0.653 3.347 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.156 1.156 7 C -0.493 4.493 8 H 0.130 0.870 9 N -0.123 5.123 10 C 0.292 3.708 11 O -0.413 6.413 12 C -0.108 4.108 13 H 0.127 0.873 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.233 4.233 17 S -0.037 6.037 18 C -0.207 4.207 19 C 0.143 3.857 20 C -0.203 4.203 21 C -0.095 4.095 22 C -0.249 4.249 23 C -0.044 4.044 24 N -0.205 5.205 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.393 -2.623 -2.523 6.506 hybrid contribution 0.411 0.840 1.456 1.731 sum 5.804 -1.784 -1.067 6.165 Atomic orbital electron populations 1.69787 1.06420 1.28830 1.41436 1.25335 0.94848 0.98321 0.93266 0.87411 0.83394 0.84002 0.79893 1.19387 1.20448 1.15605 1.18930 0.87287 0.97440 1.45634 0.87046 1.41508 1.09703 1.48436 1.12627 1.20814 0.83795 0.79991 0.86201 1.90617 1.21672 1.58122 1.70924 1.21209 1.01367 0.96243 0.91981 0.87302 1.21377 0.97980 0.98237 0.97361 1.21728 1.02929 0.97637 0.93504 1.23445 1.00218 0.98190 1.01490 1.86851 1.44012 1.46343 1.26541 1.23326 1.05594 0.99828 0.91902 1.18875 0.88856 0.91337 0.86678 1.21792 1.02313 1.03866 0.92375 1.21306 0.96025 0.95445 0.96702 1.21797 0.95713 1.06677 1.00748 1.22355 0.98761 0.95122 0.88165 1.67416 1.19068 1.10116 1.23940 0.90997 0.91446 0.90761 0.91065 0.90492 0.90209 0.88246 0.85926 0.90362 0.83793 0.85635 0.86028 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.42 13.96 55.49 0.77 -20.65 16 2 C 0.09 2.35 4.76 -17.49 -0.08 2.27 16 3 Si 0.83 19.61 26.93 -169.99 -4.58 15.03 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.23 -5.73 5.02 56.52 0.28 -5.45 16 7 C -0.37 -8.84 6.58 -14.90 -0.10 -8.94 16 8 H 0.11 2.79 7.25 -52.49 -0.38 2.41 16 9 N -0.41 -9.60 2.21 -60.71 -0.13 -9.74 16 10 C 0.50 11.36 6.71 -10.98 -0.07 11.28 16 11 O -0.54 -13.20 14.92 5.57 0.08 -13.12 16 12 C -0.09 -1.59 1.67 -91.93 -0.15 -1.74 16 13 H 0.11 2.06 6.92 -51.93 -0.36 1.70 16 14 C -0.11 -1.76 4.28 -27.17 -0.12 -1.87 16 15 C -0.12 -1.50 5.75 -26.90 -0.15 -1.66 16 16 C -0.09 -1.07 6.45 37.21 0.24 -0.83 16 17 S -0.26 -4.31 22.33 -107.50 -2.40 -6.71 16 18 C -0.06 -1.07 5.62 37.21 0.21 -0.86 16 19 C 0.37 8.66 3.94 -154.64 -0.61 8.06 16 20 C -0.18 -3.83 8.54 -39.22 -0.33 -4.16 16 21 C -0.07 -1.22 10.17 -39.31 -0.40 -1.62 16 22 C -0.23 -3.82 10.11 -39.40 -0.40 -4.21 16 23 C 0.12 2.19 11.18 -17.57 -0.20 1.99 16 24 N -0.49 -11.36 7.77 -12.34 -0.10 -11.45 16 25 H 0.28 6.81 8.31 -40.82 -0.34 6.48 16 26 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.12 2.57 6.75 -51.93 -0.35 2.22 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.14 3.14 7.42 -52.48 -0.39 2.75 16 35 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -28.66 310.59 -8.78 -37.44 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.94 Total: 6.81 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.17 Total: -2.30 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.54 Total: -41.84 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.58 Total: 15.03 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.40 Total: -6.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.66 -8.78 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.371 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds