Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48509 * 109.46916 * 274.01672 * 3 2 1 5 5 H 1.48501 * 109.47263 * 34.01338 * 3 2 1 6 6 H 1.48493 * 109.47023 * 154.01480 * 3 2 1 7 7 C 1.38893 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00092 * 24.10493 * 7 2 1 9 9 N 1.37217 * 119.99621 * 204.10226 * 7 2 1 10 10 C 1.34776 * 120.00209 * 227.96299 * 9 7 2 11 11 O 1.21269 * 119.99739 * 183.90792 * 10 9 7 12 12 C 1.50702 * 119.99896 * 3.90077 * 10 9 7 13 13 H 1.08998 * 109.38796 * 315.25599 * 12 10 9 14 14 C 1.52576 * 109.39155 * 195.45079 * 12 10 9 15 15 C 1.52574 * 110.72802 * 169.18025 * 14 12 10 16 16 C 1.53097 * 109.95973 * 70.67358 * 15 14 12 17 17 S 1.81751 * 108.84065 * 296.98116 * 16 15 14 18 18 C 1.53103 * 109.38491 * 75.05638 * 12 10 9 19 19 C 1.39431 * 119.99674 * 47.96543 * 9 7 2 20 20 C 1.39060 * 119.69905 * 33.30894 * 19 9 7 21 21 C 1.38386 * 119.09859 * 179.97438 * 20 19 9 22 22 C 1.38825 * 118.48976 * 359.97438 * 21 20 19 23 23 C 1.38146 * 119.31571 * 0.02562 * 22 21 20 24 24 N 1.31879 * 120.84788 * 359.97438 * 23 22 21 25 25 H 0.97010 * 119.99621 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.22462 * 289.50507 * 14 12 10 27 27 H 1.09002 * 109.22496 * 48.89924 * 14 12 10 28 28 H 1.08993 * 109.39186 * 190.82363 * 15 14 12 29 29 H 1.09004 * 109.39119 * 310.52836 * 15 14 12 30 30 H 1.09002 * 109.57614 * 56.78207 * 16 15 14 31 31 H 1.09001 * 109.58165 * 177.16967 * 16 15 14 32 32 H 1.08999 * 109.57834 * 302.97575 * 18 12 10 33 33 H 1.08999 * 109.57817 * 63.36666 * 18 12 10 34 34 H 1.08003 * 120.45454 * 0.25355 * 20 19 9 35 35 H 1.07999 * 120.75087 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.34240 * 180.02562 * 22 21 20 37 37 H 1.08000 * 119.57470 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4108 2.0954 -1.3967 5 1 1.4908 2.6267 0.7832 6 1 3.5856 1.4170 0.6134 7 6 2.0085 -1.2029 -0.0005 8 1 1.5391 -2.0972 -0.3829 9 7 3.2909 -1.2550 0.4847 10 6 4.2569 -1.8677 -0.2281 11 8 5.3736 -1.9760 0.2320 12 6 3.9490 -2.4183 -1.5967 13 1 3.0010 -2.9555 -1.5658 14 6 5.0598 -3.3750 -2.0195 15 6 4.6573 -4.1510 -3.2700 16 6 4.6426 -3.2166 -4.4827 17 16 3.3805 -1.9352 -4.2211 18 6 3.8469 -1.2642 -2.5976 19 6 3.5947 -0.6740 1.7153 20 6 2.6439 -0.6727 2.7301 21 6 2.9588 -0.0932 3.9466 22 6 4.2190 0.4667 4.1070 23 6 5.1144 0.4296 3.0556 24 7 4.7862 -0.1296 1.9073 25 1 -0.4850 0.8402 0.0004 26 1 5.9651 -2.8044 -2.2270 27 1 5.2561 -4.0775 -1.2095 28 1 5.3717 -4.9559 -3.4420 29 1 3.6633 -4.5754 -3.1282 30 1 5.6205 -2.7485 -4.5949 31 1 4.4035 -3.7869 -5.3803 32 1 3.0872 -0.5575 -2.2639 33 1 4.8101 -0.7596 -2.6726 34 1 1.6744 -1.1219 2.5724 35 1 2.2408 -0.0776 4.7532 36 1 4.4966 0.9264 5.0440 37 1 6.0960 0.8636 3.1759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = -4.667738 kcal Electronic energy + Delta-G solvation = -21879.372173 eV Core-core repulsion = 18747.507670 eV Total energy + Delta-G solvation = -3131.864503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87240 -40.15935 -37.37324 -36.82925 -34.21077 -33.20636 -32.80630 -30.87559 -28.20421 -27.17519 -25.61421 -24.23940 -23.63823 -22.01887 -20.85355 -19.74401 -18.51181 -17.77769 -17.39624 -17.06331 -16.66401 -16.35147 -15.92113 -15.47045 -15.40774 -15.25426 -14.89477 -14.70080 -14.33122 -14.10121 -13.93915 -13.87562 -13.54923 -13.08535 -12.96785 -12.65784 -12.48058 -12.35649 -12.08069 -11.90646 -11.81058 -11.42627 -10.87964 -10.68246 -10.63548 -10.54125 -10.03730 -9.15676 -8.69320 -8.66791 -6.36634 0.25233 0.51090 0.78096 1.11822 1.21448 1.39340 1.50518 1.87430 2.10637 2.32791 2.73897 3.16766 3.61147 3.69864 3.80842 3.89878 4.01803 4.09704 4.14774 4.24286 4.35495 4.40776 4.51365 4.55855 4.57918 4.72532 4.83204 4.94079 4.97686 5.03513 5.12710 5.19188 5.32205 5.37029 5.44445 5.84336 5.98918 6.23669 6.77888 7.05311 7.29985 7.70661 8.43891 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.006770 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.567200 B = 4134.838299 C = 4967.633284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.419 5.419 10 C 0.495 3.505 11 O -0.564 6.564 12 C -0.078 4.078 13 H 0.101 0.899 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.073 4.073 17 S -0.285 6.285 18 C -0.054 4.054 19 C 0.338 3.662 20 C -0.200 4.200 21 C -0.063 4.063 22 C -0.203 4.203 23 C 0.098 3.902 24 N -0.526 5.526 25 H 0.283 0.717 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -3.060 -0.650 7.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.133 4.133 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.477 4.477 8 H 0.112 0.888 9 N -0.135 5.135 10 C 0.285 3.715 11 O -0.443 6.443 12 C -0.101 4.101 13 H 0.119 0.881 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.221 4.221 17 S -0.058 6.058 18 C -0.202 4.202 19 C 0.111 3.889 20 C -0.223 4.223 21 C -0.089 4.089 22 C -0.224 4.224 23 C -0.060 4.060 24 N -0.241 5.241 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.183 0.817 36 H 0.189 0.811 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.627 -2.775 -1.897 7.430 hybrid contribution 0.131 0.874 1.397 1.653 sum 6.758 -1.901 -0.500 7.038 Atomic orbital electron populations 1.69812 1.07031 1.29305 1.43554 1.25541 0.94966 0.99442 0.93363 0.86843 0.82123 0.82509 0.79276 1.19856 1.20378 1.16784 1.18671 0.87429 0.96623 1.44967 0.88795 1.41608 1.09456 1.48969 1.13492 1.21444 0.83356 0.79464 0.87283 1.90572 1.22515 1.59365 1.71844 1.21213 1.02121 0.96688 0.90032 0.88135 1.21354 0.96580 0.97566 0.98842 1.21698 1.03812 0.97893 0.91614 1.23606 0.99160 0.96766 1.02540 1.86887 1.46263 1.48325 1.24347 1.23094 1.04361 0.99301 0.93465 1.19074 0.89907 0.92730 0.87140 1.21833 1.01406 1.05287 0.93776 1.21807 0.97338 0.93637 0.96116 1.22314 0.94275 1.04112 1.01720 1.23056 1.00662 0.94584 0.87710 1.67359 1.19259 1.11184 1.26324 0.90710 0.91846 0.91426 0.87625 0.90583 0.88979 0.85239 0.89074 0.90565 0.85418 0.81737 0.81059 0.80833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.58 13.96 21.65 0.30 -45.28 16 2 C 0.08 3.91 4.76 84.91 0.40 4.31 16 3 Si 0.87 41.50 26.93 68.60 1.85 43.35 16 4 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -12.16 5.02 99.48 0.50 -11.66 16 7 C -0.35 -17.62 6.58 84.01 0.55 -17.07 16 8 H 0.09 4.97 7.25 -2.91 -0.02 4.95 16 9 N -0.42 -20.49 2.21 -464.38 -1.02 -21.51 16 10 C 0.50 23.13 6.71 87.66 0.59 23.72 16 11 O -0.56 -28.53 14.92 -3.00 -0.04 -28.58 16 12 C -0.08 -2.98 1.67 -11.65 -0.02 -3.00 16 13 H 0.10 3.97 6.92 -2.39 -0.02 3.95 16 14 C -0.11 -3.26 4.28 30.31 0.13 -3.13 16 15 C -0.11 -2.53 5.75 30.49 0.18 -2.35 16 16 C -0.07 -1.63 6.45 72.01 0.46 -1.16 16 17 S -0.29 -9.13 22.33 -56.49 -1.26 -10.39 16 18 C -0.05 -2.04 5.62 72.02 0.40 -1.63 16 19 C 0.34 16.05 3.94 132.90 0.52 16.57 16 20 C -0.20 -8.48 8.54 22.50 0.19 -8.29 16 21 C -0.06 -2.07 10.17 22.45 0.23 -1.84 16 22 C -0.20 -6.03 10.11 22.39 0.23 -5.80 16 23 C 0.10 3.52 11.18 84.66 0.95 4.47 16 24 N -0.53 -24.29 7.77 -192.95 -1.50 -25.79 16 25 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 26 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 27 H 0.07 2.17 7.96 -2.39 -0.02 2.15 16 28 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.79 8.06 -2.38 -0.02 1.77 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 4.02 6.75 -2.39 -0.02 4.01 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.13 5.73 7.42 -2.91 -0.02 5.71 16 35 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -64.97 310.59 4.00 -60.98 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.86 Total: 22.42 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.82 Total: 4.80 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.22 Total: -92.58 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.04 Total: -28.58 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.85 Total: 43.35 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.26 Total: -10.39 kcal Total: -64.97 4.00 -60.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.308 kcal (2) G-P(sol) polarization free energy of solvation -64.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds