Wall clock time and date at job start Tue Mar 31 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48509 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47066 * 299.99612 * 3 2 1 6 6 H 1.48499 * 109.47219 * 60.00188 * 3 2 1 7 7 C 1.38894 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99596 * 191.54973 * 7 2 1 9 9 N 1.37211 * 119.99812 * 11.55289 * 7 2 1 10 10 C 1.34777 * 119.99725 * 209.62156 * 9 7 2 11 11 O 1.21270 * 119.99935 * 185.56950 * 10 9 7 12 12 C 1.50699 * 120.00108 * 5.56381 * 10 9 7 13 13 H 1.09004 * 109.38813 * 38.03674 * 12 10 9 14 14 C 1.52581 * 109.39201 * 157.73948 * 12 10 9 15 15 C 1.52587 * 110.72970 * 190.82489 * 14 12 10 16 16 C 1.53095 * 109.95392 * 289.32912 * 15 14 12 17 17 S 1.81740 * 108.84491 * 63.02271 * 16 15 14 18 18 C 1.53098 * 109.39284 * 278.23674 * 12 10 9 19 19 C 1.39427 * 120.00241 * 29.62028 * 9 7 2 20 20 C 1.39064 * 119.69349 * 84.10173 * 19 9 7 21 21 C 1.38382 * 119.09310 * 179.76753 * 20 19 9 22 22 C 1.38825 * 118.49536 * 0.45098 * 21 20 19 23 23 C 1.38150 * 119.30689 * 359.53148 * 22 21 20 24 24 N 1.31873 * 120.85221 * 0.24326 * 23 22 21 25 25 H 0.97008 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.22610 * 311.14880 * 14 12 10 27 27 H 1.09002 * 109.22693 * 70.50411 * 14 12 10 28 28 H 1.08996 * 109.38947 * 169.17560 * 15 14 12 29 29 H 1.09002 * 109.30363 * 49.42550 * 15 14 12 30 30 H 1.09005 * 109.57695 * 303.21431 * 16 15 14 31 31 H 1.09000 * 109.57213 * 182.83232 * 16 15 14 32 32 H 1.09002 * 109.57548 * 296.63315 * 18 12 10 33 33 H 1.08999 * 109.57349 * 56.89022 * 18 12 10 34 34 H 1.07997 * 120.45463 * 0.02562 * 20 19 9 35 35 H 1.08006 * 120.75370 * 180.23223 * 21 20 19 36 36 H 1.07998 * 120.34586 * 179.80143 * 22 21 20 37 37 H 1.08002 * 119.57032 * 180.23338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0721 -1.2122 0.1878 9 7 1.3433 -2.3792 -0.2369 10 6 1.7864 -3.5269 0.3136 11 8 1.2607 -4.5807 0.0241 12 6 2.9351 -3.5006 1.2887 13 1 2.8516 -2.6177 1.9224 14 6 2.8893 -4.7528 2.1593 15 6 3.8669 -4.6361 3.3250 16 6 5.3060 -4.7285 2.8113 17 16 5.6257 -3.3227 1.7047 18 6 4.2561 -3.4490 0.5166 19 6 0.2090 -2.3873 -1.0476 20 6 0.3500 -2.4646 -2.4289 21 6 -0.7843 -2.4766 -3.2215 22 6 -2.0250 -2.4011 -2.6033 23 6 -2.0906 -2.3266 -1.2254 24 7 -0.9924 -2.3217 -0.4954 25 1 -0.4850 0.8401 -0.0004 26 1 1.8796 -4.8822 2.5491 27 1 3.1537 -5.6203 1.5546 28 1 3.6830 -5.4436 4.0337 29 1 3.7211 -3.6775 3.8229 30 1 5.4393 -5.6617 2.2639 31 1 5.9973 -4.6950 3.6534 32 1 4.3689 -4.3572 -0.0754 33 1 4.2604 -2.5807 -0.1422 34 1 1.3313 -2.5188 -2.8768 35 1 -0.7060 -2.5397 -4.2969 36 1 -2.9297 -2.4049 -3.1932 37 1 -3.0537 -2.2714 -0.7398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:09 Heat of formation + Delta-G solvation = 9.767176 kcal Electronic energy + Delta-G solvation = -21708.231560 eV Core-core repulsion = 18576.993001 eV Total energy + Delta-G solvation = -3131.238559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83063 -38.37004 -35.86378 -34.81945 -31.79463 -31.57630 -31.35015 -29.18068 -26.93472 -25.11931 -23.96145 -22.54675 -22.21929 -20.61527 -19.11026 -17.99895 -16.83580 -15.83047 -15.66135 -15.50997 -14.94966 -14.83206 -14.40533 -14.17897 -13.80334 -13.36608 -13.12609 -13.04004 -12.63790 -12.50390 -12.35201 -12.09681 -11.61661 -11.21531 -11.20004 -11.14143 -11.05126 -10.94253 -10.51217 -10.44175 -10.32387 -9.56578 -9.46711 -8.93629 -8.66469 -8.47884 -8.04501 -7.81894 -7.42617 -6.38585 -4.16902 2.02301 2.08200 2.27661 2.73796 3.07183 3.17929 3.21151 3.63853 3.99303 4.39940 4.80426 4.93017 4.99271 5.04267 5.17133 5.34180 5.47004 5.51595 5.54605 5.64887 5.70508 5.84627 5.89492 5.95758 6.06864 6.08847 6.17562 6.27542 6.43078 6.54426 6.55069 6.69646 6.92148 6.94777 7.30289 7.37246 7.83369 8.27156 8.93902 9.14697 9.28682 9.71740 10.58318 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.006596 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.672557 B = 4243.839212 C = 5371.994264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.046 3.954 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.354 4.354 8 H 0.106 0.894 9 N -0.402 5.402 10 C 0.487 3.513 11 O -0.591 6.591 12 C -0.086 4.086 13 H 0.109 0.891 14 C -0.108 4.108 15 C -0.121 4.121 16 C -0.081 4.081 17 S -0.274 6.274 18 C -0.063 4.063 19 C 0.426 3.574 20 C -0.173 4.173 21 C -0.083 4.083 22 C -0.204 4.204 23 C 0.109 3.891 24 N -0.432 5.432 25 H 0.269 0.731 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -4.135 0.316 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.163 4.163 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.480 4.480 8 H 0.123 0.877 9 N -0.121 5.121 10 C 0.275 3.725 11 O -0.475 6.475 12 C -0.109 4.109 13 H 0.127 0.873 14 C -0.146 4.146 15 C -0.159 4.159 16 C -0.229 4.229 17 S -0.046 6.046 18 C -0.211 4.211 19 C 0.201 3.799 20 C -0.195 4.195 21 C -0.109 4.109 22 C -0.224 4.224 23 C -0.051 4.051 24 N -0.142 5.142 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.479 -3.703 1.136 5.921 hybrid contribution -0.621 0.354 -1.038 1.260 sum 3.858 -3.349 0.098 5.110 Atomic orbital electron populations 1.70021 1.05713 1.27425 1.43897 1.25458 0.95470 0.99996 0.95388 0.86025 0.80052 0.81688 0.78025 1.18795 1.20611 1.20421 1.19584 0.93154 0.82247 1.53034 0.87689 1.41083 1.22105 1.07704 1.41163 1.20195 0.86278 0.83540 0.82466 1.90561 1.61873 1.30916 1.64171 1.21181 0.92184 1.00740 0.96745 0.87323 1.21318 1.00133 0.97304 0.95822 1.21747 0.92686 1.03179 0.98326 1.23428 1.00411 0.98488 1.00554 1.86720 1.39900 1.42225 1.35801 1.23452 0.93025 1.06488 0.98168 1.17888 0.86301 0.89065 0.86680 1.21892 0.99133 1.04121 0.94383 1.21178 0.92400 0.98180 0.99167 1.21850 0.97688 1.06378 0.96503 1.22318 0.96383 0.96031 0.90390 1.67268 0.97982 1.07862 1.41044 0.92019 0.90746 0.91581 0.91038 0.90469 0.90154 0.88277 0.90076 0.86577 0.86089 0.86168 0.86305 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.20 10.60 55.49 0.59 -21.61 16 2 C 0.05 1.15 5.25 -17.49 -0.09 1.06 16 3 Si 0.92 19.41 29.57 -169.99 -5.03 14.38 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.35 -8.71 8.31 -14.90 -0.12 -8.83 16 8 H 0.11 2.41 5.36 -52.49 -0.28 2.13 16 9 N -0.40 -10.08 2.71 -60.71 -0.16 -10.25 16 10 C 0.49 11.57 6.70 -10.99 -0.07 11.50 16 11 O -0.59 -15.46 16.18 5.57 0.09 -15.37 16 12 C -0.09 -1.64 1.56 -91.94 -0.14 -1.79 16 13 H 0.11 2.20 7.27 -51.93 -0.38 1.82 16 14 C -0.11 -1.80 4.29 -27.16 -0.12 -1.92 16 15 C -0.12 -1.59 5.75 -26.89 -0.15 -1.74 16 16 C -0.08 -1.00 6.45 37.21 0.24 -0.76 16 17 S -0.27 -4.20 22.33 -107.50 -2.40 -6.60 16 18 C -0.06 -1.08 5.47 37.21 0.20 -0.88 16 19 C 0.43 10.73 3.75 -154.65 -0.58 10.15 16 20 C -0.17 -3.84 10.03 -39.22 -0.39 -4.23 16 21 C -0.08 -1.55 10.17 -39.31 -0.40 -1.95 16 22 C -0.20 -3.72 10.11 -39.40 -0.40 -4.11 16 23 C 0.11 2.27 11.18 -17.57 -0.20 2.07 16 24 N -0.43 -10.89 8.82 -12.34 -0.11 -11.00 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 27 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.12 2.10 6.30 -51.93 -0.33 1.77 16 34 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 35 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -30.33 316.77 -9.24 -39.56 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.76 Total: 7.55 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.23 Total: -1.44 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.31 Total: -42.87 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.40 Total: -6.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.33 -9.24 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.331 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds