Wall clock time and date at job start Tue Mar 31 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48509 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47066 * 299.99612 * 3 2 1 6 6 H 1.48499 * 109.47219 * 60.00188 * 3 2 1 7 7 C 1.38894 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99596 * 191.54973 * 7 2 1 9 9 N 1.37211 * 119.99812 * 11.55289 * 7 2 1 10 10 C 1.34777 * 119.99725 * 209.62156 * 9 7 2 11 11 O 1.21270 * 119.99935 * 185.56950 * 10 9 7 12 12 C 1.50699 * 120.00108 * 5.56381 * 10 9 7 13 13 H 1.09004 * 109.38813 * 38.03674 * 12 10 9 14 14 C 1.52581 * 109.39201 * 157.73948 * 12 10 9 15 15 C 1.52587 * 110.72970 * 190.82489 * 14 12 10 16 16 C 1.53095 * 109.95392 * 289.32912 * 15 14 12 17 17 S 1.81740 * 108.84491 * 63.02271 * 16 15 14 18 18 C 1.53098 * 109.39284 * 278.23674 * 12 10 9 19 19 C 1.39427 * 120.00241 * 29.62028 * 9 7 2 20 20 C 1.39064 * 119.69349 * 84.10173 * 19 9 7 21 21 C 1.38382 * 119.09310 * 179.76753 * 20 19 9 22 22 C 1.38825 * 118.49536 * 0.45098 * 21 20 19 23 23 C 1.38150 * 119.30689 * 359.53148 * 22 21 20 24 24 N 1.31873 * 120.85221 * 0.24326 * 23 22 21 25 25 H 0.97008 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.22610 * 311.14880 * 14 12 10 27 27 H 1.09002 * 109.22693 * 70.50411 * 14 12 10 28 28 H 1.08996 * 109.38947 * 169.17560 * 15 14 12 29 29 H 1.09002 * 109.30363 * 49.42550 * 15 14 12 30 30 H 1.09005 * 109.57695 * 303.21431 * 16 15 14 31 31 H 1.09000 * 109.57213 * 182.83232 * 16 15 14 32 32 H 1.09002 * 109.57548 * 296.63315 * 18 12 10 33 33 H 1.08999 * 109.57349 * 56.89022 * 18 12 10 34 34 H 1.07997 * 120.45463 * 0.02562 * 20 19 9 35 35 H 1.08006 * 120.75370 * 180.23223 * 21 20 19 36 36 H 1.07998 * 120.34586 * 179.80143 * 22 21 20 37 37 H 1.08002 * 119.57032 * 180.23338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0721 -1.2122 0.1878 9 7 1.3433 -2.3792 -0.2369 10 6 1.7864 -3.5269 0.3136 11 8 1.2607 -4.5807 0.0241 12 6 2.9351 -3.5006 1.2887 13 1 2.8516 -2.6177 1.9224 14 6 2.8893 -4.7528 2.1593 15 6 3.8669 -4.6361 3.3250 16 6 5.3060 -4.7285 2.8113 17 16 5.6257 -3.3227 1.7047 18 6 4.2561 -3.4490 0.5166 19 6 0.2090 -2.3873 -1.0476 20 6 0.3500 -2.4646 -2.4289 21 6 -0.7843 -2.4766 -3.2215 22 6 -2.0250 -2.4011 -2.6033 23 6 -2.0906 -2.3266 -1.2254 24 7 -0.9924 -2.3217 -0.4954 25 1 -0.4850 0.8401 -0.0004 26 1 1.8796 -4.8822 2.5491 27 1 3.1537 -5.6203 1.5546 28 1 3.6830 -5.4436 4.0337 29 1 3.7211 -3.6775 3.8229 30 1 5.4393 -5.6617 2.2639 31 1 5.9973 -4.6950 3.6534 32 1 4.3689 -4.3572 -0.0754 33 1 4.2604 -2.5807 -0.1422 34 1 1.3313 -2.5188 -2.8768 35 1 -0.7060 -2.5397 -4.2969 36 1 -2.9297 -2.4049 -3.1932 37 1 -3.0537 -2.2714 -0.7398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:09 Heat of formation + Delta-G solvation = -7.105545 kcal Electronic energy + Delta-G solvation = -21708.963216 eV Core-core repulsion = 18576.993001 eV Total energy + Delta-G solvation = -3131.970215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55605 -40.01618 -37.29103 -36.64792 -33.67243 -33.10177 -32.78846 -30.79018 -28.21114 -27.00510 -25.50140 -24.15532 -23.64479 -22.02450 -20.87948 -19.67170 -18.39691 -17.38627 -17.27754 -17.17627 -16.54804 -16.30541 -16.07602 -15.43801 -15.39673 -14.93936 -14.71592 -14.29839 -14.17996 -13.95980 -13.79325 -13.67486 -13.31923 -12.93558 -12.80828 -12.60392 -12.43584 -12.37594 -12.11007 -11.84604 -11.82800 -11.33797 -10.79776 -10.56718 -10.40076 -10.24860 -9.72470 -9.58826 -8.65606 -8.25544 -6.09714 0.45220 0.70648 0.79931 1.35074 1.42973 1.52986 1.55434 1.87057 2.24192 2.72162 3.05028 3.23128 3.70623 3.78203 3.84894 3.98668 4.01725 4.14471 4.18941 4.28524 4.43266 4.49169 4.50719 4.59091 4.66978 4.74595 4.82883 4.97132 4.98221 5.04127 5.13706 5.33248 5.34549 5.38586 5.42351 5.75163 6.05624 6.42549 7.04236 7.39261 7.53187 7.88492 8.70197 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.006596 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.672557 B = 4243.839212 C = 5371.994264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.002 3.998 3 Si 0.981 3.019 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.361 4.361 8 H 0.115 0.885 9 N -0.413 5.413 10 C 0.474 3.526 11 O -0.625 6.625 12 C -0.076 4.076 13 H 0.094 0.906 14 C -0.103 4.103 15 C -0.112 4.112 16 C -0.072 4.072 17 S -0.280 6.280 18 C -0.057 4.057 19 C 0.387 3.613 20 C -0.198 4.198 21 C -0.076 4.076 22 C -0.188 4.188 23 C 0.088 3.912 24 N -0.478 5.478 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -4.232 0.088 6.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.204 4.204 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.487 4.487 8 H 0.132 0.868 9 N -0.130 5.130 10 C 0.263 3.737 11 O -0.512 6.512 12 C -0.099 4.099 13 H 0.112 0.888 14 C -0.141 4.141 15 C -0.151 4.151 16 C -0.220 4.220 17 S -0.053 6.053 18 C -0.206 4.206 19 C 0.162 3.838 20 C -0.220 4.220 21 C -0.102 4.102 22 C -0.208 4.208 23 C -0.071 4.071 24 N -0.189 5.189 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.308 -3.797 0.905 6.589 hybrid contribution -0.973 0.312 -0.987 1.421 sum 4.335 -3.486 -0.082 5.563 Atomic orbital electron populations 1.70208 1.07093 1.27605 1.45196 1.26276 0.96164 1.02902 0.95063 0.85044 0.79415 0.77567 0.77529 1.17508 1.20739 1.20618 1.19918 0.93662 0.82505 1.52602 0.86797 1.41362 1.22323 1.08007 1.41340 1.21008 0.87103 0.82909 0.82638 1.90505 1.63281 1.31877 1.65543 1.21139 0.91574 1.01367 0.95843 0.88795 1.21301 1.00307 0.95839 0.96698 1.21697 0.92100 1.04225 0.97070 1.23570 1.00299 0.97369 1.00739 1.86733 1.38156 1.44356 1.36014 1.23234 0.92941 1.05920 0.98507 1.18249 0.86438 0.91215 0.87867 1.22097 1.00702 1.05342 0.93858 1.21707 0.91403 0.96006 1.01127 1.22328 0.99377 1.03402 0.95681 1.22912 0.96268 0.95849 0.92089 1.67160 0.99048 1.09634 1.43023 0.92558 0.92779 0.91749 0.87987 0.90839 0.88842 0.85241 0.89932 0.88026 0.85989 0.81746 0.81429 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.26 10.60 21.65 0.23 -47.03 16 2 C 0.00 0.08 5.25 84.91 0.45 0.52 16 3 Si 0.98 40.32 29.57 68.60 2.03 42.35 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.36 -18.30 8.31 84.01 0.70 -17.61 16 8 H 0.11 5.38 5.36 -2.91 -0.02 5.37 16 9 N -0.41 -21.58 2.71 -464.39 -1.26 -22.84 16 10 C 0.47 23.57 6.70 87.66 0.59 24.15 16 11 O -0.63 -34.27 16.18 -3.00 -0.05 -34.32 16 12 C -0.08 -3.02 1.56 -11.65 -0.02 -3.03 16 13 H 0.09 3.94 7.27 -2.38 -0.02 3.93 16 14 C -0.10 -3.46 4.29 30.32 0.13 -3.33 16 15 C -0.11 -2.72 5.75 30.49 0.18 -2.54 16 16 C -0.07 -1.57 6.45 72.01 0.46 -1.10 16 17 S -0.28 -8.16 22.33 -56.49 -1.26 -9.42 16 18 C -0.06 -1.99 5.47 72.01 0.39 -1.60 16 19 C 0.39 20.13 3.75 132.91 0.50 20.63 16 20 C -0.20 -8.91 10.03 22.50 0.23 -8.68 16 21 C -0.08 -2.72 10.17 22.44 0.23 -2.49 16 22 C -0.19 -6.42 10.11 22.39 0.23 -6.19 16 23 C 0.09 3.65 11.18 84.67 0.95 4.60 16 24 N -0.48 -24.84 8.82 -192.96 -1.70 -26.54 16 25 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 26 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 27 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.10 3.78 6.30 -2.39 -0.02 3.76 16 34 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 35 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.16 5.63 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -69.33 316.77 4.06 -65.27 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 1.07 Total: 29.21 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.00 Total: 3.33 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -2.73 Total: -96.41 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.26 Total: -9.42 kcal Total: -69.33 4.06 -65.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.166 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds