Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47514 * 239.99578 * 2 1 3 5 5 C 1.50707 * 109.47004 * 59.99874 * 4 2 1 6 6 H 1.08005 * 119.99442 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00142 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99879 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00087 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47471 * 89.99627 * 9 7 5 11 11 H 1.48502 * 109.47394 * 209.99888 * 9 7 5 12 12 H 1.48500 * 109.47190 * 329.99637 * 9 7 5 13 13 C 1.53010 * 109.46877 * 119.99935 * 2 1 3 14 14 N 1.46502 * 109.47034 * 299.99686 * 13 2 1 15 15 C 1.34774 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21610 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.47366 * 119.99902 * 180.02562 * 15 14 13 18 18 C 1.38884 * 123.09438 * 359.97438 * 17 15 14 19 19 C 1.33325 * 115.20427 * 180.02562 * 18 17 15 20 20 S 1.75729 * 110.43954 * 359.97438 * 19 18 17 21 21 C 1.38001 * 123.09599 * 179.97438 * 17 15 14 22 22 C 1.43202 * 125.38083 * 359.97438 * 21 17 15 23 23 N 7.30477 * 102.56598 * 108.38771 * 2 1 3 24 24 H 1.09000 * 109.47480 * 300.00288 * 1 2 3 25 25 H 1.08996 * 109.47045 * 60.00094 * 1 2 3 26 26 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47008 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46990 * 299.99940 * 3 2 1 29 29 H 1.09000 * 109.47541 * 59.99745 * 3 2 1 30 30 H 1.08998 * 109.47701 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47140 * 300.00628 * 4 2 1 32 32 H 0.97003 * 120.00054 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46709 * 179.97438 * 13 2 1 34 34 H 1.08994 * 109.47165 * 60.00113 * 13 2 1 35 35 H 0.96998 * 119.99584 * 0.02562 * 14 13 2 36 36 H 1.08000 * 122.39638 * 0.03737 * 18 17 15 37 37 H 1.07996 * 124.77890 * 180.26881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 1.4333 0.1385 -4.8058 9 14 2.9453 -2.0004 -3.9033 10 1 2.0868 -3.2113 -3.9492 11 1 3.7377 -1.9077 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8776 -0.4907 3.6696 16 8 2.5767 -1.4795 3.7813 17 6 1.3859 0.2037 4.8728 18 6 0.5843 1.3366 4.8201 19 6 0.2304 1.8372 6.0041 20 16 0.9117 0.8737 7.3062 21 6 1.6797 -0.2118 6.1556 22 6 2.4827 -1.3476 6.4958 23 7 3.1192 -2.2491 6.7658 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 1.6676 -0.1929 -5.6868 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.2699 1.7801 3.8870 37 1 -0.3915 2.7091 6.1432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908213085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = 16.470559 kcal Electronic energy + Delta-G solvation = -20349.597176 eV Core-core repulsion = 17218.649298 eV Total energy + Delta-G solvation = -3130.947878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29376 -37.98513 -36.97934 -36.47047 -33.76227 -32.13598 -30.54915 -28.06365 -27.22810 -26.61262 -25.12437 -22.63963 -21.72561 -20.84616 -19.54143 -18.11861 -17.06656 -16.67144 -16.29561 -15.50841 -15.46086 -14.69602 -14.37126 -14.13208 -13.88464 -13.69898 -13.64772 -13.44343 -13.12054 -12.77990 -12.75917 -12.34571 -12.30348 -12.25724 -11.59018 -11.29120 -11.17803 -11.03930 -10.65361 -10.54119 -10.15317 -10.01752 -9.77222 -9.53539 -9.35575 -9.19578 -9.03014 -8.87059 -8.55641 -6.06596 -4.04078 -0.22213 0.63549 1.21479 1.55203 2.66234 2.86674 3.20464 3.30489 3.32290 3.38785 3.42797 3.72824 4.36724 4.43952 4.66928 4.76120 5.25535 5.25893 5.37235 5.46731 5.47175 5.56079 5.61883 6.04119 6.05290 6.12547 6.25243 6.37339 6.54632 6.60257 6.84072 6.97428 7.00689 7.16467 7.28506 7.33036 7.49859 7.76039 8.15769 8.49907 8.97063 9.56207 11.06044 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029198 B = 0.003340 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.727850 B = 8380.420810 C = 9142.790462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.707 5.707 15 C 0.560 3.440 16 O -0.530 6.530 17 C -0.084 4.084 18 C -0.118 4.118 19 C -0.197 4.197 20 S 0.219 5.781 21 C -0.089 4.089 22 C 0.278 3.722 23 N -0.379 5.379 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.401 0.599 36 H 0.157 0.843 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 6.833 23.035 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.359 5.359 15 C 0.344 3.656 16 O -0.407 6.407 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.334 4.334 20 S 0.485 5.515 21 C -0.212 4.212 22 C -0.038 4.038 23 N -0.057 5.057 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.175 0.825 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.398 4.844 24.922 25.615 hybrid contribution 0.049 -0.108 -2.069 2.073 sum -3.349 4.736 22.853 23.578 Atomic orbital electron populations 1.21787 0.94703 1.01383 1.00801 1.20706 0.95890 0.95962 0.93816 1.21782 1.00570 0.95498 1.00798 1.19594 0.96343 0.95524 0.92546 1.21067 1.31909 1.13377 0.88589 0.90358 1.24990 0.95672 0.96728 0.95990 1.69898 1.45904 1.40548 0.97899 0.86869 0.81352 0.83922 0.77693 1.20360 1.21489 1.18988 1.21731 0.99164 0.96161 0.82735 1.46012 1.52682 1.31850 1.05364 1.17622 0.80962 0.84178 0.82849 1.90852 1.37630 1.25711 1.86526 1.19598 1.00919 0.97505 0.92521 1.20050 0.99152 0.95597 0.99873 1.25875 1.06762 1.05489 0.95318 1.84327 1.42866 1.17608 1.06677 1.20410 1.05719 0.98411 0.96616 1.23903 0.93556 0.92237 0.94141 1.81218 1.07987 1.08982 1.07513 0.95025 0.90762 0.93309 0.93307 0.90756 0.95028 0.96312 0.96761 0.92771 0.91452 0.91462 0.76289 0.82523 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 2 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.09 8.05 37.15 0.30 -1.79 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.36 8.20 -34.44 -0.28 -13.64 16 6 H 0.08 2.15 5.92 -52.48 -0.31 1.84 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 13 C 0.12 1.99 4.56 -4.04 -0.02 1.97 16 14 N -0.71 -9.13 4.93 -61.40 -0.30 -9.44 16 15 C 0.56 7.89 7.79 -12.55 -0.10 7.79 16 16 O -0.53 -9.73 15.19 5.27 0.08 -9.65 16 17 C -0.08 -0.87 5.86 -106.03 -0.62 -1.49 16 18 C -0.12 -0.79 9.61 -41.06 -0.39 -1.18 16 19 C -0.20 -0.92 11.16 29.02 0.32 -0.59 16 20 S 0.22 1.29 23.27 -107.50 -2.50 -1.21 16 21 C -0.09 -0.93 6.36 -37.74 -0.24 -1.17 16 22 C 0.28 3.81 13.95 -22.47 -0.31 3.49 16 23 N -0.38 -6.04 18.54 41.84 0.78 -5.27 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 25 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.07 4.58 -40.82 -0.19 3.88 16 36 H 0.16 0.74 6.88 -52.49 -0.36 0.38 16 37 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -33.04 324.85 -6.57 -39.61 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.31 Total: -1.59 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.31 Total: -7.93 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.25 Total: -40.77 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.04 -6.57 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908213085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.084 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds