Wall clock time and date at job start Tue Mar 31 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.09003 * 110.85452 * 301.20456 * 13 11 10 15 15 C 1.54738 * 110.97247 * 64.99994 * 13 11 10 16 16 C 1.51679 * 102.54882 * 142.33857 * 15 13 11 17 17 C 1.47651 * 125.86563 * 164.64514 * 16 15 13 18 18 C 1.39634 * 120.13552 * 180.02562 * 17 16 15 19 19 C 1.37941 * 119.89835 * 179.97438 * 18 17 16 20 20 C 1.38344 * 120.18035 * 0.02562 * 19 18 17 21 21 C 1.38549 * 120.27129 * 359.97438 * 20 19 18 22 22 F 1.35105 * 119.95134 * 179.97438 * 21 20 19 23 23 C 1.38209 * 120.10216 * 359.74774 * 21 20 19 24 24 N 1.29083 * 108.27354 * 344.60710 * 16 15 13 25 25 O 1.41400 * 112.86786 * 359.68069 * 24 16 15 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 30 30 H 1.09000 * 110.78988 * 260.60234 * 15 13 11 31 31 H 1.09003 * 110.79234 * 23.87716 * 15 13 11 32 32 H 1.08004 * 120.05413 * 359.97438 * 18 17 16 33 33 H 1.08002 * 119.91202 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.86615 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.09108 * 180.25331 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 1 3.3866 -5.9812 -0.8696 15 6 3.5571 -6.0524 1.3112 16 6 3.6859 -7.5372 1.5929 17 6 4.6349 -8.1594 2.5375 18 6 4.6512 -9.5458 2.7037 19 6 5.5402 -10.1219 3.5871 20 6 6.4152 -9.3300 4.3090 21 6 6.4053 -7.9538 4.1497 22 9 7.2623 -7.1865 4.8584 23 6 5.5233 -7.3649 3.2635 24 7 2.8227 -8.1635 0.8656 25 8 2.0462 -7.2951 0.0641 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 3.1568 -3.4353 0.0009 30 1 4.5376 -5.6009 1.1597 31 1 3.0207 -5.5481 2.1150 32 1 3.9687 -10.1660 2.1415 33 1 5.5527 -11.1941 3.7162 34 1 7.1094 -9.7865 4.9990 35 1 5.5185 -6.2924 3.1365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916161057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:35 Heat of formation + Delta-G solvation = -41.401487 kcal Electronic energy + Delta-G solvation = -21779.281236 eV Core-core repulsion = 18079.610662 eV Total energy + Delta-G solvation = -3699.670574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.29671 -40.77029 -39.33912 -38.33347 -34.64776 -33.90247 -32.70681 -31.50405 -30.89277 -30.37788 -27.02462 -24.68707 -24.24194 -22.96226 -22.47236 -20.53782 -20.04141 -18.12845 -17.80663 -16.89224 -16.69477 -16.62969 -16.24572 -16.00580 -15.46689 -15.30279 -14.71367 -14.34441 -14.07026 -13.80693 -13.66537 -13.48441 -13.32684 -12.99330 -12.49203 -12.43738 -12.33592 -12.25584 -11.80203 -11.73738 -11.13542 -10.99329 -10.84202 -10.38310 -10.21200 -9.45813 -9.32087 -8.96336 -8.87059 -8.80673 -8.18961 -6.59494 -4.34591 0.14283 0.68578 1.78236 2.55798 2.91761 3.16334 3.32877 3.34513 3.45689 3.53921 3.71343 3.85511 4.15040 4.30085 4.39171 4.40362 4.46842 4.61503 4.70359 4.81176 4.99238 5.11661 5.19568 5.25067 5.36807 5.42876 5.54429 5.62768 5.80042 5.84784 6.31354 6.84202 7.00720 7.08935 7.11285 7.50401 8.15160 8.25293 8.59915 8.70643 9.39180 10.80587 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.003228 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.681516 B = 8673.088535 C =10014.923895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.626 4.626 8 H 0.058 0.942 9 C 0.240 3.760 10 N -0.699 5.699 11 C 0.504 3.496 12 O -0.529 6.529 13 C 0.026 3.974 14 H 0.113 0.887 15 C -0.140 4.140 16 C 0.118 3.882 17 C -0.007 4.007 18 C -0.091 4.091 19 C -0.092 4.092 20 C -0.137 4.137 21 C 0.099 3.901 22 F -0.135 7.135 23 C -0.123 4.123 24 N -0.275 5.275 25 O -0.157 6.157 26 H 0.273 0.727 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.394 0.606 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.470 -18.031 7.531 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.664 4.664 8 H 0.077 0.923 9 C 0.119 3.881 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.405 6.405 13 C -0.036 4.036 14 H 0.131 0.869 15 C -0.179 4.179 16 C -0.072 4.072 17 C -0.008 4.008 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.157 4.157 21 C 0.080 3.920 22 F -0.113 7.113 23 C -0.144 4.144 24 N -0.013 5.013 25 O -0.177 6.177 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.227 0.773 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.731 -17.482 7.122 23.945 hybrid contribution 1.156 -0.568 0.219 1.307 sum 15.888 -18.050 7.340 25.142 Atomic orbital electron populations 1.70767 1.06897 1.31126 1.44547 1.25898 0.96394 1.02780 0.93172 0.83441 0.74829 0.74820 0.76613 1.20498 1.21220 1.21224 1.22025 0.94571 0.91317 1.58517 0.92345 1.19253 0.88901 0.83122 0.96793 1.46218 1.11329 1.05107 1.72233 1.19866 0.88970 0.83861 0.78758 1.90728 1.16128 1.84408 1.49263 1.23649 0.94172 0.86885 0.98933 0.86944 1.22991 1.03124 0.93759 0.98067 1.24080 0.94937 0.93818 0.94340 1.17512 0.94625 0.92906 0.95732 1.21462 0.98473 0.93445 0.97740 1.21000 0.94340 1.00552 0.95094 1.21368 1.00998 0.91814 1.01492 1.17459 0.91392 0.88979 0.94154 1.91545 1.67995 1.75281 1.76487 1.21231 0.95348 1.01380 0.96413 1.78393 1.02890 1.16821 1.03167 1.91403 1.41395 1.19502 1.65445 0.91642 0.96260 0.96220 0.77258 0.86755 0.86887 0.84103 0.84147 0.84202 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.65 55.43 0.76 -26.01 16 2 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 23.74 29.90 -169.99 -5.08 18.66 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.63 -16.62 9.28 -34.44 -0.32 -16.94 16 8 H 0.06 1.45 7.60 -52.48 -0.40 1.05 16 9 C 0.24 6.14 4.74 -5.19 -0.02 6.11 16 10 N -0.70 -14.00 5.54 -61.47 -0.34 -14.34 16 11 C 0.50 9.99 7.14 -10.98 -0.08 9.91 16 12 O -0.53 -13.10 16.59 -13.29 -0.22 -13.32 16 13 C 0.03 0.39 4.23 -26.96 -0.11 0.28 16 14 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.14 -1.60 5.81 -26.49 -0.15 -1.75 16 16 C 0.12 1.39 7.16 -79.42 -0.57 0.82 16 17 C -0.01 -0.06 5.87 -105.04 -0.62 -0.68 16 18 C -0.09 -0.74 9.68 -39.17 -0.38 -1.12 16 19 C -0.09 -0.56 10.03 -39.65 -0.40 -0.95 16 20 C -0.14 -0.88 10.02 -39.43 -0.40 -1.28 16 21 C 0.10 0.81 7.29 -39.48 -0.29 0.53 16 22 F -0.13 -1.24 17.26 2.25 0.04 -1.20 16 23 C -0.12 -1.03 9.59 -39.10 -0.37 -1.40 16 24 N -0.27 -4.03 12.12 35.30 0.43 -3.61 16 25 O -0.16 -2.78 11.82 -30.22 -0.36 -3.14 16 26 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 27 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 28 H 0.02 0.56 8.01 -51.93 -0.42 0.14 16 29 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 30 H 0.11 0.89 7.95 -51.93 -0.41 0.48 16 31 H 0.11 1.37 7.90 -51.93 -0.41 0.96 16 32 H 0.14 1.11 7.84 -52.48 -0.41 0.70 16 33 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.15 1.03 7.36 -52.49 -0.39 0.64 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -34.32 318.96 -7.33 -41.65 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.55 Total: 2.42 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.81 Total: -5.92 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.84 Total: -43.96 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.58 Total: -16.45 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.08 Total: 18.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.32 -7.33 -41.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916161057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.244 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds