Wall clock time and date at job start Tue Mar 31 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.09003 * 110.85452 * 301.20456 * 13 11 10 15 15 C 1.54738 * 110.97247 * 64.99994 * 13 11 10 16 16 C 1.51679 * 102.54882 * 142.33857 * 15 13 11 17 17 C 1.47651 * 125.86563 * 164.64514 * 16 15 13 18 18 C 1.39634 * 120.13552 * 180.02562 * 17 16 15 19 19 C 1.37941 * 119.89835 * 179.97438 * 18 17 16 20 20 C 1.38344 * 120.18035 * 0.02562 * 19 18 17 21 21 C 1.38549 * 120.27129 * 359.97438 * 20 19 18 22 22 F 1.35105 * 119.95134 * 179.97438 * 21 20 19 23 23 C 1.38209 * 120.10216 * 359.74774 * 21 20 19 24 24 N 1.29083 * 108.27354 * 344.60710 * 16 15 13 25 25 O 1.41400 * 112.86786 * 359.68069 * 24 16 15 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 30 30 H 1.09000 * 110.78988 * 260.60234 * 15 13 11 31 31 H 1.09003 * 110.79234 * 23.87716 * 15 13 11 32 32 H 1.08004 * 120.05413 * 359.97438 * 18 17 16 33 33 H 1.08002 * 119.91202 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.86615 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.09108 * 180.25331 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 1 3.3866 -5.9812 -0.8696 15 6 3.5571 -6.0524 1.3112 16 6 3.6859 -7.5372 1.5929 17 6 4.6349 -8.1594 2.5375 18 6 4.6512 -9.5458 2.7037 19 6 5.5402 -10.1219 3.5871 20 6 6.4152 -9.3300 4.3090 21 6 6.4053 -7.9538 4.1497 22 9 7.2623 -7.1865 4.8584 23 6 5.5233 -7.3649 3.2635 24 7 2.8227 -8.1635 0.8656 25 8 2.0462 -7.2951 0.0641 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 3.1568 -3.4353 0.0009 30 1 4.5376 -5.6009 1.1597 31 1 3.0207 -5.5481 2.1150 32 1 3.9687 -10.1660 2.1415 33 1 5.5527 -11.1941 3.7162 34 1 7.1094 -9.7865 4.9990 35 1 5.5185 -6.2924 3.1365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916161057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:34 Heat of formation + Delta-G solvation = -64.675112 kcal Electronic energy + Delta-G solvation = -21780.290457 eV Core-core repulsion = 18079.610662 eV Total energy + Delta-G solvation = -3700.679794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.92460 -41.91962 -40.36562 -39.55822 -36.56798 -34.89051 -34.62483 -32.47498 -31.78875 -31.09940 -28.90859 -26.07895 -24.94658 -24.56827 -23.41624 -21.76057 -21.27148 -19.70486 -18.77848 -18.38662 -17.52112 -17.31243 -17.26254 -16.99454 -16.63268 -16.41722 -16.07983 -15.72901 -15.44420 -14.97060 -14.63470 -14.52645 -14.41328 -14.36182 -14.15622 -13.97546 -13.38799 -13.14457 -12.98138 -12.90424 -12.53951 -12.39910 -11.91918 -11.90518 -11.50405 -11.02716 -10.80834 -10.79199 -10.13470 -9.99515 -9.70963 -8.80854 -6.57584 -0.55968 0.11791 0.98503 1.28250 1.43006 1.57452 1.65455 1.83974 2.23724 2.55858 2.56302 2.72786 3.01550 3.07149 3.18005 3.36388 3.56288 3.77540 3.84715 3.91768 4.03484 4.24476 4.26074 4.41451 4.44499 4.71839 4.78237 4.88974 4.96492 5.02536 5.19264 5.25811 5.28740 5.48141 5.76090 6.00330 6.05410 6.27924 6.59092 7.07581 7.31069 8.58500 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.003228 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.681516 B = 8673.088535 C =10014.923895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 1.130 2.870 4 H -0.290 1.290 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.628 4.628 8 H 0.083 0.917 9 C 0.252 3.748 10 N -0.687 5.687 11 C 0.503 3.497 12 O -0.586 6.586 13 C 0.033 3.967 14 H 0.147 0.853 15 C -0.137 4.137 16 C 0.145 3.855 17 C -0.030 4.030 18 C -0.094 4.094 19 C -0.085 4.085 20 C -0.124 4.124 21 C 0.083 3.917 22 F -0.142 7.142 23 C -0.119 4.119 24 N -0.305 5.305 25 O -0.205 6.205 26 H 0.254 0.746 27 H -0.013 1.013 28 H -0.015 1.015 29 H 0.415 0.585 30 H 0.161 0.839 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.430 -18.563 8.634 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.231 4.231 3 Si 0.949 3.051 4 H -0.215 1.215 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.666 4.666 8 H 0.101 0.899 9 C 0.129 3.871 10 N -0.338 5.338 11 C 0.288 3.712 12 O -0.467 6.467 13 C -0.028 4.028 14 H 0.164 0.836 15 C -0.176 4.176 16 C -0.045 4.045 17 C -0.031 4.031 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.143 4.143 21 C 0.064 3.936 22 F -0.121 7.121 23 C -0.140 4.140 24 N -0.047 5.047 25 O -0.222 6.222 26 H 0.063 0.937 27 H 0.005 0.995 28 H 0.003 0.997 29 H 0.252 0.748 30 H 0.179 0.821 31 H 0.126 0.874 32 H 0.157 0.843 33 H 0.189 0.811 34 H 0.183 0.817 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.738 -18.040 8.212 27.276 hybrid contribution 0.005 -0.546 -0.005 0.546 sum 18.744 -18.586 8.207 27.642 Atomic orbital electron populations 1.70913 1.08425 1.29973 1.47364 1.27658 0.96277 1.07243 0.91925 0.82792 0.73916 0.69893 0.78522 1.21536 1.18548 1.18740 1.22407 0.95809 0.91293 1.57065 0.89917 1.18767 0.89337 0.85266 0.93733 1.45876 1.11547 1.04229 1.72139 1.20769 0.89151 0.84709 0.76598 1.90697 1.19133 1.85313 1.51531 1.23636 0.92836 0.84103 1.02256 0.83564 1.23092 1.04672 0.93915 0.95877 1.24470 0.93334 0.93859 0.92795 1.17502 0.95333 0.93618 0.96647 1.21627 0.98772 0.93027 0.97997 1.21318 0.93079 1.02091 0.93772 1.21723 1.00592 0.91138 1.00860 1.17652 0.91678 0.89729 0.94570 1.91530 1.68248 1.75615 1.76691 1.21320 0.94780 1.01971 0.95912 1.78454 1.04774 1.16115 1.05334 1.91376 1.43591 1.20482 1.66743 0.93709 0.99542 0.99724 0.74767 0.82105 0.87435 0.84344 0.81062 0.81715 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.65 21.45 0.29 -56.83 16 2 C -0.03 -1.78 5.46 84.65 0.46 -1.32 16 3 Si 1.13 46.45 29.90 68.60 2.05 48.50 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.63 -33.15 9.28 25.60 0.24 -32.91 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.25 13.35 4.74 85.64 0.41 13.75 16 10 N -0.69 -27.53 5.54 -466.77 -2.59 -30.12 16 11 C 0.50 20.36 7.14 87.66 0.63 20.99 16 12 O -0.59 -30.69 16.59 14.99 0.25 -30.44 16 13 C 0.03 0.98 4.23 30.44 0.13 1.10 16 14 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 15 C -0.14 -2.83 5.81 30.75 0.18 -2.65 16 16 C 0.14 3.18 7.16 45.76 0.33 3.51 16 17 C -0.03 -0.49 5.87 -20.14 -0.12 -0.61 16 18 C -0.09 -1.31 9.68 22.54 0.22 -1.09 16 19 C -0.08 -0.73 10.03 22.22 0.22 -0.51 16 20 C -0.12 -1.14 10.02 22.37 0.22 -0.92 16 21 C 0.08 1.12 7.29 22.34 0.16 1.28 16 22 F -0.14 -2.26 17.26 44.97 0.78 -1.48 16 23 C -0.12 -1.67 9.59 22.58 0.22 -1.45 16 24 N -0.30 -8.89 12.12 -42.23 -0.51 -9.40 16 25 O -0.21 -7.41 11.82 -20.31 -0.24 -7.65 16 26 H 0.25 16.19 7.22 -92.71 -0.67 15.52 16 27 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 28 H -0.02 -0.90 8.01 -2.38 -0.02 -0.92 16 29 H 0.42 12.96 8.32 -92.71 -0.77 12.18 16 30 H 0.16 1.82 7.95 -2.39 -0.02 1.81 16 31 H 0.11 2.44 7.90 -2.39 -0.02 2.42 16 32 H 0.14 1.99 7.84 -2.91 -0.02 1.97 16 33 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.16 1.72 7.36 -2.91 -0.02 1.70 16 Total: -1.00 -79.62 318.96 3.79 -75.83 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.47 Total: 12.42 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 3.29 Total: -0.83 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -2.81 Total: -96.34 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: 0.01 Total: -38.09 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.05 Total: 48.50 kcal Total: -79.62 3.79 -75.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916161057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.151 kcal (2) G-P(sol) polarization free energy of solvation -79.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds