Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.33794 * 124.17898 * 269.69884 * 10 9 7 12 12 O 1.21541 * 123.76873 * 0.03786 * 11 10 9 13 13 N 1.34531 * 112.45622 * 179.86921 * 11 10 9 14 14 C 1.47312 * 106.61814 * 0.37858 * 13 11 10 15 15 H 1.09005 * 110.59627 * 118.30681 * 14 13 11 16 16 C 1.53001 * 110.59817 * 241.25131 * 14 13 11 17 17 C 1.50696 * 109.47388 * 289.17422 * 16 14 13 18 18 C 1.38240 * 119.97730 * 269.72917 * 17 16 14 19 19 C 1.38197 * 120.02492 * 179.72474 * 18 17 16 20 20 C 1.38464 * 119.97619 * 0.52804 * 19 18 17 21 21 F 1.35100 * 120.02701 * 179.72634 * 20 19 18 22 22 C 1.38456 * 119.94426 * 359.74419 * 20 19 18 23 23 C 1.38195 * 119.97738 * 0.02562 * 22 20 19 24 24 C 1.34769 * 124.17873 * 90.00054 * 10 9 7 25 25 O 1.21237 * 127.15222 * 359.97438 * 24 10 9 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 0.97003 * 126.68696 * 180.13174 * 13 11 10 30 30 H 1.08999 * 109.47008 * 49.17669 * 16 14 13 31 31 H 1.08998 * 109.46994 * 169.17590 * 16 14 13 32 32 H 1.08004 * 119.98434 * 359.97438 * 18 17 16 33 33 H 1.07997 * 120.01305 * 180.29412 * 19 18 17 34 34 H 1.08005 * 120.01223 * 180.02562 * 22 20 19 35 35 H 1.08001 * 119.99016 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6872 -4.1876 -1.1063 12 8 2.3866 -3.8442 -2.2328 13 7 3.5465 -5.1860 -0.8330 14 6 3.6286 -5.2813 0.6347 15 1 3.2835 -6.2575 0.9756 16 6 5.0580 -5.0172 1.1122 17 6 5.9389 -6.1775 0.7266 18 6 6.0980 -7.2420 1.5941 19 6 6.9011 -8.3092 1.2391 20 6 7.5552 -8.3069 0.0187 21 9 8.3449 -9.3471 -0.3270 22 6 7.3995 -7.2376 -0.8469 23 6 6.5921 -6.1737 -0.4918 24 6 2.6951 -4.1880 1.1155 25 8 2.4433 -3.8928 2.2641 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 4.0171 -5.7381 -1.4769 30 1 5.4337 -4.1056 0.6474 31 1 5.0635 -4.9013 2.1960 32 1 5.5913 -7.2414 2.5479 33 1 7.0215 -9.1429 1.9149 34 1 7.9088 -7.2349 -1.7993 35 1 6.4702 -5.3396 -1.1670 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924847130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -72.414122 kcal Electronic energy + Delta-G solvation = -22609.995112 eV Core-core repulsion = 18908.979729 eV Total energy + Delta-G solvation = -3701.015383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.18548 -41.91729 -39.46934 -38.01793 -35.91012 -34.90987 -33.11219 -32.10275 -31.47613 -28.68314 -27.41904 -24.72795 -23.43927 -23.30615 -22.22708 -21.28738 -20.08831 -17.98187 -17.76582 -17.16531 -16.75301 -16.40196 -16.05625 -15.85616 -15.67285 -14.95201 -14.74492 -14.38550 -14.04011 -13.89016 -13.74441 -13.68910 -13.57837 -13.27916 -12.64168 -12.22401 -12.01630 -11.89969 -11.76098 -11.30804 -11.27725 -10.71112 -10.28958 -10.11662 -9.72763 -9.68957 -9.46063 -9.37039 -8.82892 -8.49538 -8.41895 -6.51906 -4.24930 0.75426 0.87760 2.07491 2.80584 3.19778 3.40078 3.42777 3.48822 3.61287 3.63239 3.93642 4.19287 4.36569 4.46844 4.54414 4.59647 4.71409 4.84644 4.94002 5.00806 5.25148 5.38673 5.55710 5.60536 5.74983 5.78317 5.81991 5.89158 6.19728 6.38130 6.54083 6.74621 6.83172 7.03897 7.76321 7.78056 7.91664 8.24534 8.60344 8.70733 9.43859 10.87086 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.003558 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.837794 B = 7867.008104 C = 7906.094758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 1.074 2.926 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.614 4.614 8 H 0.054 0.946 9 C 0.239 3.761 10 N -0.552 5.552 11 C 0.700 3.300 12 O -0.540 6.540 13 N -0.735 5.735 14 C 0.098 3.902 15 H 0.120 0.880 16 C -0.081 4.081 17 C -0.090 4.090 18 C -0.084 4.084 19 C -0.151 4.151 20 C 0.093 3.907 21 F -0.142 7.142 22 C -0.150 4.150 23 C -0.086 4.086 24 C 0.522 3.478 25 O -0.471 6.471 26 H 0.268 0.732 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.431 0.569 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -16.871 2.135 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.901 3.099 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.652 4.652 8 H 0.073 0.927 9 C 0.121 3.879 10 N -0.296 5.296 11 C 0.401 3.599 12 O -0.413 6.413 13 N -0.401 5.401 14 C -0.011 4.011 15 H 0.138 0.862 16 C -0.119 4.119 17 C -0.090 4.090 18 C -0.102 4.102 19 C -0.170 4.170 20 C 0.074 3.926 21 F -0.121 7.121 22 C -0.169 4.169 23 C -0.104 4.104 24 C 0.307 3.693 25 O -0.342 6.342 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.275 0.725 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.459 -14.785 2.153 20.109 hybrid contribution 0.668 -2.245 -0.393 2.375 sum 14.127 -17.029 1.760 22.196 Atomic orbital electron populations 1.70817 1.06767 1.30555 1.45580 1.25857 0.96369 1.02670 0.93099 0.83465 0.74912 0.74813 0.76667 1.20439 1.21222 1.21229 1.22078 0.94702 0.91161 1.57267 0.92726 1.19642 0.87324 0.82286 0.98640 1.46595 1.43041 1.33510 1.06414 1.15966 0.79394 0.79589 0.84932 1.90969 1.63135 1.66337 1.20822 1.45606 1.49326 1.38309 1.06848 1.22020 0.96297 1.00633 0.82185 0.86219 1.20792 0.90738 0.96900 1.03466 1.19845 0.98407 0.96098 0.94641 1.20998 0.97229 0.92208 0.99755 1.21156 0.99304 1.00613 0.95938 1.17768 0.93869 0.85872 0.95133 1.91501 1.71954 1.56244 1.92367 1.21175 1.01543 0.93720 1.00446 1.21049 0.95275 0.97920 0.96147 1.20563 0.80746 0.82461 0.85493 1.90756 1.60018 1.65247 1.18148 0.92144 0.94011 0.93812 0.72537 0.89089 0.88000 0.84528 0.84677 0.84620 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.65 55.43 0.76 -26.33 16 2 C 0.03 0.72 5.46 -17.82 -0.10 0.63 16 3 Si 1.07 25.22 29.90 -169.99 -5.08 20.13 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.61 -17.45 9.39 -34.44 -0.32 -17.77 16 8 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.24 6.19 4.77 -5.19 -0.02 6.16 16 10 N -0.55 -11.82 2.59 -122.02 -0.32 -12.14 16 11 C 0.70 13.75 8.62 -88.01 -0.76 13.00 16 12 O -0.54 -12.69 17.48 5.33 0.09 -12.59 16 13 N -0.73 -9.87 6.04 -59.19 -0.36 -10.22 16 14 C 0.10 1.21 3.63 -68.21 -0.25 0.96 16 15 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.08 -0.82 5.09 -27.88 -0.14 -0.96 16 17 C -0.09 -0.77 5.04 -104.62 -0.53 -1.30 16 18 C -0.08 -0.64 9.70 -39.60 -0.38 -1.02 16 19 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 20 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 21 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 22 C -0.15 -1.25 10.03 -39.52 -0.40 -1.64 16 23 C -0.09 -0.72 9.13 -39.59 -0.36 -1.08 16 24 C 0.52 9.58 7.65 -10.56 -0.08 9.50 16 25 O -0.47 -9.88 17.76 5.59 0.10 -9.78 16 26 H 0.27 7.96 7.22 -40.82 -0.29 7.66 16 27 H 0.04 1.12 7.87 -51.93 -0.41 0.71 16 28 H 0.04 1.20 7.72 -51.93 -0.40 0.79 16 29 H 0.43 4.58 8.49 -40.82 -0.35 4.23 16 30 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -34.26 317.48 -7.62 -41.88 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.61 Total: 0.21 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -4.03 Total: 5.43 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.08 Total: -48.69 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.19 Total: -22.37 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.26 -7.62 -41.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924847130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.535 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds