Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86807 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99606 * 3 2 1 5 5 H 1.48499 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47072 * 119.99950 * 3 2 1 7 7 C 1.38795 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00387 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99975 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46866 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99834 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99687 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99948 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46995 * 34.99738 * 14 13 11 16 16 C 1.50702 * 109.47103 * 154.99701 * 14 13 11 17 17 C 1.38225 * 119.61833 * 244.99911 * 16 14 13 18 18 C 1.38635 * 119.15939 * 180.02562 * 17 16 14 19 19 C 1.38675 * 118.41956 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16332 * 0.27967 * 19 18 17 21 21 N 1.31860 * 119.61626 * 65.02589 * 16 14 13 22 22 C 1.53002 * 109.47114 * 275.00044 * 14 13 11 23 23 C 1.52996 * 117.49865 * 128.74703 * 22 14 13 24 24 C 1.52995 * 117.49793 * 60.08384 * 22 14 13 25 25 H 0.97012 * 119.99930 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47040 * 60.00027 * 10 9 7 27 27 H 1.09000 * 109.46956 * 299.99611 * 10 9 7 28 28 H 0.97004 * 120.00379 * 359.97438 * 13 11 10 29 29 H 1.07997 * 120.42090 * 0.02562 * 17 16 14 30 30 H 1.07998 * 120.78847 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.41399 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.61418 * 179.70216 * 20 19 18 33 33 H 1.09002 * 115.54636 * 274.41243 * 22 14 13 34 34 H 1.09008 * 117.49772 * 0.02562 * 23 22 14 35 35 H 1.08997 * 117.49739 * 145.01686 * 23 22 14 36 36 H 1.09003 * 117.50048 * 214.97662 * 24 22 14 37 37 H 1.09000 * 117.49770 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3431 -0.0007 14 6 2.3303 -7.7150 -0.0008 15 1 1.4142 -7.7599 -0.5898 16 6 3.3598 -8.6369 -0.6020 17 6 3.0833 -9.2878 -1.7897 18 6 4.0370 -10.1341 -2.3340 19 6 5.2382 -10.2951 -1.6600 20 6 5.4410 -9.6161 -0.4737 21 7 4.5136 -8.8137 0.0113 22 6 2.0344 -8.1489 1.4363 23 6 0.6524 -8.7380 1.7260 24 6 1.0058 -7.3338 2.2227 25 1 -0.4850 0.8402 -0.0004 26 1 3.1244 -3.7313 0.8905 27 1 3.1244 -3.7314 -0.8895 28 1 3.8008 -6.1835 -0.0012 29 1 2.1364 -9.1390 -2.2873 30 1 3.8489 -10.6555 -3.2609 31 1 6.0036 -10.9469 -2.0549 32 1 6.3719 -9.7400 0.0597 33 1 2.8812 -8.5572 1.9879 34 1 -0.0459 -8.8169 0.8927 35 1 0.5900 -9.5335 2.4685 36 1 1.1756 -7.2061 3.2918 37 1 0.5402 -6.4882 1.7163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928607228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = 1.722850 kcal Electronic energy + Delta-G solvation = -20163.004064 eV Core-core repulsion = 17031.416678 eV Total energy + Delta-G solvation = -3131.587387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61169 -40.47380 -38.12388 -35.41039 -34.58289 -33.37901 -32.75843 -30.77684 -27.87321 -27.42511 -24.54768 -23.50391 -23.21327 -22.09541 -21.17302 -19.87770 -18.33134 -17.80001 -17.33305 -17.18679 -16.87526 -16.60725 -16.30400 -15.96020 -15.58209 -15.01299 -14.73139 -14.64198 -14.40634 -13.97866 -13.69897 -13.51441 -13.17162 -12.95698 -12.87184 -12.66479 -12.58039 -12.30276 -11.75801 -11.35948 -11.26327 -11.12744 -10.90876 -10.79093 -10.45205 -10.28508 -10.04768 -9.96551 -8.65240 -8.34433 -6.11947 0.07451 0.36115 1.26735 1.43675 1.46120 1.55815 1.59210 2.19461 2.28034 2.87809 2.90289 2.99495 3.22454 3.33270 3.56495 3.87725 3.95764 4.07548 4.11137 4.12606 4.22502 4.23366 4.28321 4.31831 4.49865 4.65744 4.67425 4.77752 4.83616 5.01091 5.20711 5.23772 5.27633 5.32382 5.41605 5.46266 5.77149 6.19630 6.46582 7.01172 7.06779 7.21828 8.74419 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.003421 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.902448 B = 8182.891830 C = 8868.234075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.080 0.920 9 S -0.138 6.138 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.549 6.549 13 N -0.703 5.703 14 C 0.232 3.768 15 H 0.088 0.912 16 C 0.106 3.894 17 C -0.166 4.166 18 C -0.075 4.075 19 C -0.162 4.162 20 C 0.088 3.912 21 N -0.494 5.494 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.199 4.199 25 H 0.272 0.728 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.411 0.589 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.524 -23.245 -2.692 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.098 0.902 9 S 0.089 5.911 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.427 6.427 13 N -0.356 5.356 14 C 0.127 3.873 15 H 0.106 0.894 16 C -0.031 4.031 17 C -0.186 4.186 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.069 4.069 21 N -0.203 5.203 22 C -0.175 4.175 23 C -0.195 4.195 24 C -0.236 4.236 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.247 0.753 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.197 0.803 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.541 -23.039 -1.921 25.409 hybrid contribution 1.684 1.031 -0.618 2.069 sum 12.225 -22.009 -2.539 25.304 Atomic orbital electron populations 1.70171 1.07905 1.28683 1.47897 1.26099 0.95962 1.03216 0.93694 0.85028 0.77850 0.75799 0.79469 1.18687 1.20262 1.18747 1.23190 0.95341 0.92262 1.59054 0.90155 1.85463 1.09908 0.98725 1.97017 1.23369 1.03807 0.94633 1.06390 1.19945 0.86319 0.86242 0.74830 1.90627 1.16732 1.85715 1.49642 1.45800 1.10165 1.04267 1.75353 1.19251 0.94348 0.79127 0.94553 0.89425 1.20880 0.92744 0.96711 0.92802 1.22182 1.02036 0.98372 0.96002 1.21985 0.92567 0.95296 1.00195 1.22574 0.98752 1.00733 0.96128 1.23281 0.97957 0.91481 0.94225 1.67365 1.01609 1.17377 1.33996 1.22555 0.93904 1.05215 0.95821 1.23013 0.96602 0.96226 1.03627 1.23199 1.03960 0.96317 1.00092 0.91953 0.87722 0.87671 0.75349 0.84043 0.81844 0.81465 0.80314 0.86894 0.88832 0.86959 0.88826 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.14 -7.74 20.57 -56.49 -1.16 -8.90 16 10 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 11 C 0.54 20.53 7.18 87.66 0.63 21.16 16 12 O -0.55 -24.73 12.89 -3.03 -0.04 -24.77 16 13 N -0.70 -20.45 5.05 -446.09 -2.25 -22.70 16 14 C 0.23 6.09 2.59 44.25 0.11 6.20 16 15 H 0.09 2.52 7.06 -2.39 -0.02 2.50 16 16 C 0.11 2.30 5.62 42.55 0.24 2.53 16 17 C -0.17 -2.90 9.71 22.36 0.22 -2.68 16 18 C -0.07 -0.90 10.18 22.47 0.23 -0.67 16 19 C -0.16 -1.71 10.11 22.36 0.23 -1.48 16 20 C 0.09 1.26 11.18 84.67 0.95 2.20 16 21 N -0.49 -10.17 9.72 -183.88 -1.79 -11.96 16 22 C -0.16 -4.02 5.29 -10.80 -0.06 -4.07 16 23 C -0.16 -3.77 10.18 30.62 0.31 -3.46 16 24 C -0.20 -5.97 9.74 30.62 0.30 -5.68 16 25 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 26 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 27 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 28 H 0.41 10.40 8.58 -92.71 -0.79 9.61 16 29 H 0.14 2.23 7.95 -2.91 -0.02 2.20 16 30 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 31 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 32 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.11 2.84 7.73 -2.39 -0.02 2.82 16 34 H 0.09 2.25 8.05 -2.38 -0.02 2.23 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 3.43 5.02 -2.39 -0.01 3.42 16 Total: -1.00 -75.20 332.49 2.07 -73.13 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.29 Total: 25.91 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.70 Total: -20.81 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -3.75 Total: -90.61 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.77 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.90 kcal Total: -75.20 2.07 -73.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928607228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.852 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds