Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99564 * 2 1 4 4 H 1.48491 * 109.47317 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47306 * 30.00341 * 3 2 1 6 6 H 1.48502 * 109.46861 * 149.99853 * 3 2 1 7 7 C 1.38798 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00334 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99450 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99734 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47120 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99983 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99950 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47475 * 345.42254 * 14 13 11 16 16 C 1.50695 * 109.47446 * 225.41659 * 14 13 11 17 17 C 1.38218 * 119.62005 * 116.33018 * 16 14 13 18 18 C 1.38634 * 119.16367 * 180.02562 * 17 16 14 19 19 C 1.38671 * 118.41837 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.16508 * 359.97438 * 19 18 17 21 21 N 1.31862 * 119.61881 * 296.35661 * 16 14 13 22 22 C 1.53007 * 109.46786 * 105.41502 * 14 13 11 23 23 C 1.52997 * 117.49745 * 8.75164 * 22 14 13 24 24 C 1.52995 * 117.50071 * 300.08987 * 22 14 13 25 25 H 0.96993 * 120.00229 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47443 * 59.99641 * 10 9 7 27 27 H 1.09002 * 109.47045 * 300.00357 * 10 9 7 28 28 H 0.96994 * 119.99468 * 0.02562 * 13 11 10 29 29 H 1.07996 * 120.41847 * 0.02562 * 17 16 14 30 30 H 1.07995 * 120.78987 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.41692 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.61727 * 180.02562 * 20 19 18 33 33 H 1.09002 * 115.54408 * 154.41471 * 22 14 13 34 34 H 1.09002 * 117.50232 * 359.97438 * 23 22 14 35 35 H 1.09005 * 117.49982 * 145.01798 * 23 22 14 36 36 H 1.09001 * 117.49504 * 214.97698 * 24 22 14 37 37 H 1.09005 * 117.50110 * 359.97333 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0019 15 1 1.2721 -7.7066 0.2573 16 6 3.0891 -8.5354 1.0095 17 6 2.4219 -9.0653 2.0978 18 6 3.1288 -9.8182 3.0227 19 6 4.4868 -10.0102 2.8176 20 6 5.0859 -9.4493 1.7058 21 7 4.3817 -8.7390 0.8463 22 6 2.5105 -8.3267 -1.3928 23 6 3.3344 -7.5362 -2.4111 24 6 1.8145 -7.6325 -2.5651 25 1 -0.4850 0.8400 0.0004 26 1 3.1247 -3.7312 0.8894 27 1 3.1247 -3.7312 -0.8905 28 1 3.8012 -6.1833 -0.0015 29 1 1.3632 -8.8951 2.2260 30 1 2.6338 -10.2449 3.8824 31 1 5.0688 -10.5908 3.5179 32 1 6.1430 -9.5945 1.5387 33 1 2.5825 -9.4140 -1.4224 34 1 3.7481 -6.5801 -2.0904 35 1 3.9481 -8.1033 -3.1111 36 1 1.4288 -8.2631 -3.3663 37 1 1.2282 -6.7402 -2.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928607229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = 24.350621 kcal Electronic energy + Delta-G solvation = -20227.527461 eV Core-core repulsion = 17096.921288 eV Total energy + Delta-G solvation = -3130.606173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71293 -39.29239 -37.13954 -33.88783 -32.63337 -32.41872 -31.88061 -29.34605 -26.75306 -25.44132 -23.80482 -22.76566 -22.25032 -20.83412 -19.79072 -17.96945 -17.28562 -16.70900 -16.25080 -16.07674 -15.88046 -15.00941 -14.79532 -14.62275 -14.20168 -13.79918 -13.64069 -13.39714 -13.24176 -12.81936 -12.58274 -12.10364 -11.95253 -11.67005 -11.37758 -11.05436 -11.01328 -10.75854 -10.39276 -10.11124 -10.03230 -9.82172 -9.72087 -9.46204 -9.17391 -9.05985 -8.89352 -8.23071 -6.48805 -6.20824 -3.91135 0.82364 1.04603 3.01675 3.05800 3.23333 3.28287 3.32121 3.55059 3.72467 3.94765 4.05254 4.21451 4.43896 4.60656 4.81762 4.83864 4.97118 5.03656 5.05655 5.13961 5.14538 5.30441 5.41621 5.52291 5.52883 5.74372 5.78034 5.89645 5.92381 5.93429 5.98725 6.15556 6.19111 6.30726 6.44016 6.63735 7.60800 7.71409 7.78089 8.36348 8.59654 9.24692 10.86585 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.003492 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.241402 B = 8017.392321 C = 8491.913160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.724 5.724 14 C 0.224 3.776 15 H 0.115 0.885 16 C 0.124 3.876 17 C -0.156 4.156 18 C -0.075 4.075 19 C -0.175 4.175 20 C 0.098 3.902 21 N -0.468 5.468 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.175 4.175 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.403 0.597 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -21.127 2.471 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.391 6.391 13 N -0.378 5.378 14 C 0.118 3.882 15 H 0.133 0.867 16 C -0.014 4.014 17 C -0.177 4.177 18 C -0.101 4.101 19 C -0.195 4.195 20 C -0.060 4.060 21 N -0.177 5.177 22 C -0.177 4.177 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.238 0.762 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.785 -20.966 1.747 22.433 hybrid contribution 2.127 0.846 0.858 2.444 sum 9.912 -20.120 2.605 22.580 Atomic orbital electron populations 1.70014 1.05938 1.27442 1.46920 1.24984 0.95019 0.99002 0.94533 0.86174 0.79424 0.81584 0.78364 1.20253 1.20761 1.19700 1.22874 0.94932 0.91687 1.58900 0.90940 1.85360 1.04802 0.96246 1.96717 1.23534 1.06631 0.95250 1.04975 1.20363 0.86560 0.86282 0.74686 1.90692 1.15228 1.85404 1.47748 1.46028 1.10350 1.04342 1.77083 1.19230 0.98079 0.80166 0.90720 0.86688 1.21376 0.90425 0.95437 0.94183 1.22062 1.01939 0.98727 0.94945 1.21600 0.94283 0.95871 0.98381 1.22167 0.95789 1.01912 0.99648 1.22777 1.00051 0.92936 0.90218 1.67466 1.07267 1.13878 1.29068 1.22490 1.06870 0.98210 0.90114 1.22859 0.93854 1.02016 1.01278 1.23023 0.95513 1.03291 0.99341 0.92196 0.89282 0.89163 0.76159 0.84437 0.84724 0.84877 0.82738 0.87733 0.88507 0.89280 0.89015 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 C 0.53 9.91 7.64 -10.98 -0.08 9.82 16 12 O -0.52 -11.31 15.11 5.56 0.08 -11.23 16 13 N -0.72 -10.31 3.37 -54.93 -0.19 -10.49 16 14 C 0.22 2.89 2.93 -69.08 -0.20 2.69 16 15 H 0.12 1.64 6.76 -51.93 -0.35 1.29 16 16 C 0.12 1.45 5.70 -82.59 -0.47 0.98 16 17 C -0.16 -1.60 9.71 -39.44 -0.38 -1.98 16 18 C -0.08 -0.62 10.18 -39.28 -0.40 -1.02 16 19 C -0.18 -1.34 10.11 -39.44 -0.40 -1.74 16 20 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 21 N -0.47 -5.28 10.05 -9.48 -0.10 -5.37 16 22 C -0.16 -1.86 5.52 -90.62 -0.50 -2.36 16 23 C -0.16 -1.92 9.85 -26.70 -0.26 -2.18 16 24 C -0.17 -2.22 10.17 -26.70 -0.27 -2.49 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 27 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 28 H 0.40 5.16 8.37 -40.82 -0.34 4.82 16 29 H 0.14 1.27 7.95 -52.49 -0.42 0.85 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 34 H 0.10 1.21 6.69 -51.93 -0.35 0.86 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.59 7.79 -51.93 -0.40 1.18 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -33.71 335.88 -9.17 -42.88 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.79 Total: 5.45 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.75 Total: -13.53 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.45 Total: -41.32 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.71 -9.17 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928607229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.229 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds