Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99564 * 2 1 4 4 H 1.48491 * 109.47317 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47306 * 30.00341 * 3 2 1 6 6 H 1.48502 * 109.46861 * 149.99853 * 3 2 1 7 7 C 1.38798 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00334 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99450 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99734 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47120 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99983 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99950 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47475 * 345.42254 * 14 13 11 16 16 C 1.50695 * 109.47446 * 225.41659 * 14 13 11 17 17 C 1.38218 * 119.62005 * 116.33018 * 16 14 13 18 18 C 1.38634 * 119.16367 * 180.02562 * 17 16 14 19 19 C 1.38671 * 118.41837 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.16508 * 359.97438 * 19 18 17 21 21 N 1.31862 * 119.61881 * 296.35661 * 16 14 13 22 22 C 1.53007 * 109.46786 * 105.41502 * 14 13 11 23 23 C 1.52997 * 117.49745 * 8.75164 * 22 14 13 24 24 C 1.52995 * 117.50071 * 300.08987 * 22 14 13 25 25 H 0.96993 * 120.00229 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47443 * 59.99641 * 10 9 7 27 27 H 1.09002 * 109.47045 * 300.00357 * 10 9 7 28 28 H 0.96994 * 119.99468 * 0.02562 * 13 11 10 29 29 H 1.07996 * 120.41847 * 0.02562 * 17 16 14 30 30 H 1.07995 * 120.78987 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.41692 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.61727 * 180.02562 * 20 19 18 33 33 H 1.09002 * 115.54408 * 154.41471 * 22 14 13 34 34 H 1.09002 * 117.50232 * 359.97438 * 23 22 14 35 35 H 1.09005 * 117.49982 * 145.01798 * 23 22 14 36 36 H 1.09001 * 117.49504 * 214.97698 * 24 22 14 37 37 H 1.09005 * 117.50110 * 359.97333 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0019 15 1 1.2721 -7.7066 0.2573 16 6 3.0891 -8.5354 1.0095 17 6 2.4219 -9.0653 2.0978 18 6 3.1288 -9.8182 3.0227 19 6 4.4868 -10.0102 2.8176 20 6 5.0859 -9.4493 1.7058 21 7 4.3817 -8.7390 0.8463 22 6 2.5105 -8.3267 -1.3928 23 6 3.3344 -7.5362 -2.4111 24 6 1.8145 -7.6325 -2.5651 25 1 -0.4850 0.8400 0.0004 26 1 3.1247 -3.7312 0.8894 27 1 3.1247 -3.7312 -0.8905 28 1 3.8012 -6.1833 -0.0015 29 1 1.3632 -8.8951 2.2260 30 1 2.6338 -10.2449 3.8824 31 1 5.0688 -10.5908 3.5179 32 1 6.1430 -9.5945 1.5387 33 1 2.5825 -9.4140 -1.4224 34 1 3.7481 -6.5801 -2.0904 35 1 3.9481 -8.1033 -3.1111 36 1 1.4288 -8.2631 -3.3663 37 1 1.2282 -6.7402 -2.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928607229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = 3.120757 kcal Electronic energy + Delta-G solvation = -20228.448057 eV Core-core repulsion = 17096.921288 eV Total energy + Delta-G solvation = -3131.526769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63680 -40.47701 -38.30544 -35.06908 -34.58857 -33.36486 -32.86406 -30.77921 -27.95493 -27.49964 -24.51033 -23.57879 -23.22600 -22.13951 -20.95316 -19.88358 -18.29041 -17.94166 -17.29328 -17.25108 -16.88374 -16.68573 -16.14555 -15.85748 -15.77953 -15.06363 -14.71982 -14.49653 -14.36190 -13.96983 -13.92252 -13.59712 -13.17495 -12.90151 -12.84415 -12.68667 -12.58004 -12.37174 -11.74142 -11.40033 -11.14761 -11.12846 -10.88899 -10.76846 -10.55159 -10.29599 -10.08088 -9.97712 -8.66901 -8.35222 -6.13135 0.09439 0.36865 1.25851 1.42092 1.45885 1.56082 1.56844 2.20491 2.27078 2.83717 2.94645 2.98883 3.20195 3.31375 3.62597 3.87424 3.93718 4.05149 4.08811 4.12917 4.23023 4.24378 4.25925 4.41302 4.47868 4.59734 4.71626 4.79767 4.83982 4.99164 5.16135 5.21262 5.27236 5.28262 5.41296 5.43410 5.77996 6.19263 6.42596 7.03082 7.06110 7.17591 8.73957 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.003492 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.241402 B = 8017.392321 C = 8491.913160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.081 0.919 9 S -0.141 6.141 10 C -0.130 4.130 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.701 5.701 14 C 0.225 3.775 15 H 0.096 0.904 16 C 0.105 3.895 17 C -0.171 4.171 18 C -0.077 4.077 19 C -0.165 4.165 20 C 0.087 3.913 21 N -0.486 5.486 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.186 4.186 25 H 0.272 0.728 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.413 0.587 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -22.330 3.166 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.697 4.697 8 H 0.099 0.901 9 S 0.086 5.914 10 C -0.282 4.282 11 C 0.326 3.674 12 O -0.434 6.434 13 N -0.354 5.354 14 C 0.119 3.881 15 H 0.114 0.886 16 C -0.033 4.033 17 C -0.192 4.192 18 C -0.103 4.103 19 C -0.184 4.184 20 C -0.070 4.070 21 N -0.195 5.195 22 C -0.168 4.168 23 C -0.192 4.192 24 C -0.223 4.223 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.250 0.750 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.198 0.802 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.725 -22.207 2.440 24.782 hybrid contribution 1.295 1.043 0.690 1.800 sum 12.020 -21.164 3.130 24.540 Atomic orbital electron populations 1.70174 1.07923 1.28641 1.47935 1.26108 0.95964 1.03242 0.93680 0.84964 0.78193 0.76062 0.78828 1.19269 1.20184 1.18302 1.23210 0.95336 0.92147 1.58996 0.90095 1.85505 1.10005 0.98883 1.97026 1.23366 1.03787 0.94497 1.06509 1.20027 0.86266 0.86428 0.74693 1.90683 1.16910 1.85785 1.50010 1.45785 1.10237 1.04272 1.75150 1.19248 0.97383 0.79276 0.92197 0.88648 1.21075 0.90968 0.96708 0.94556 1.22198 1.02277 0.99466 0.95254 1.21959 0.94779 0.95023 0.98508 1.22560 0.95642 1.00802 0.99411 1.23305 1.01159 0.92339 0.90196 1.67404 1.06999 1.14899 1.30239 1.22470 1.06346 0.98812 0.89134 1.22911 0.93194 1.01805 1.01301 1.22960 0.96061 1.02612 1.00709 0.91947 0.87687 0.87441 0.74986 0.84519 0.82153 0.81575 0.80203 0.86279 0.89357 0.87239 0.87290 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 2 C 0.01 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.73 9.50 67.95 0.65 -31.09 16 8 H 0.08 4.37 7.80 -2.92 -0.02 4.34 16 9 S -0.14 -7.92 20.57 -56.49 -1.16 -9.08 16 10 C -0.13 -5.35 6.16 71.23 0.44 -4.91 16 11 C 0.54 20.48 7.64 87.65 0.67 21.15 16 12 O -0.56 -25.59 15.11 -3.02 -0.05 -25.63 16 13 N -0.70 -19.96 3.37 -446.09 -1.50 -21.47 16 14 C 0.22 5.83 2.93 44.25 0.13 5.96 16 15 H 0.10 2.87 6.76 -2.39 -0.02 2.85 16 16 C 0.10 2.35 5.70 42.55 0.24 2.59 16 17 C -0.17 -3.35 9.71 22.36 0.22 -3.13 16 18 C -0.08 -1.08 10.18 22.47 0.23 -0.85 16 19 C -0.16 -1.94 10.11 22.36 0.23 -1.72 16 20 C 0.09 1.30 11.18 84.67 0.95 2.25 16 21 N -0.49 -10.05 10.05 -183.89 -1.85 -11.90 16 22 C -0.15 -3.43 5.52 -10.79 -0.06 -3.49 16 23 C -0.15 -3.48 9.85 30.62 0.30 -3.18 16 24 C -0.19 -4.77 10.17 30.62 0.31 -4.46 16 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 27 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 28 H 0.41 10.20 8.37 -92.71 -0.78 9.43 16 29 H 0.14 2.55 7.95 -2.91 -0.02 2.53 16 30 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 34 H 0.09 2.13 6.69 -2.39 -0.02 2.11 16 35 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.22 7.79 -2.38 -0.02 2.20 16 Total: -1.00 -75.45 335.88 2.83 -72.63 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.31 Total: 24.91 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 4.76 Total: -19.55 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.07 Total: -89.24 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -75.45 2.83 -72.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928607229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.747 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds