Wall clock time and date at job start Tue Mar 31 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47129 * 161.20726 * 3 2 1 5 5 N 1.46497 * 109.47475 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99677 * 265.07837 * 5 4 3 7 7 C 1.50697 * 109.46897 * 283.72583 * 6 5 4 8 8 H 1.07998 * 120.00272 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99288 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00270 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47103 * 89.99935 * 11 9 7 13 13 H 1.48504 * 109.46920 * 209.99622 * 11 9 7 14 14 H 1.48492 * 109.47115 * 329.99211 * 11 9 7 15 15 C 1.34777 * 119.99973 * 85.07332 * 5 4 3 16 16 O 1.21589 * 120.00160 * 6.71311 * 15 5 4 17 17 C 1.47546 * 119.99781 * 186.70931 * 15 5 4 18 18 C 1.39746 * 120.18136 * 326.01123 * 17 15 5 19 19 C 1.37762 * 119.94922 * 179.97438 * 18 17 15 20 20 C 1.38550 * 120.31860 * 0.02562 * 19 18 17 21 21 C 1.38215 * 120.36735 * 359.73579 * 20 19 18 22 22 F 1.35096 * 119.97913 * 180.25893 * 21 20 19 23 23 C 1.38916 * 120.03847 * 0.52144 * 21 20 19 24 24 O 1.35712 * 120.15496 * 179.76818 * 23 21 20 25 25 H 1.09001 * 109.47565 * 41.20462 * 3 2 1 26 26 H 1.09005 * 109.46899 * 281.20336 * 3 2 1 27 27 H 1.09001 * 109.47112 * 59.99459 * 4 3 2 28 28 H 1.09006 * 109.46491 * 299.99936 * 4 3 2 29 29 H 1.08998 * 109.47252 * 43.73063 * 6 5 4 30 30 H 1.09005 * 109.46717 * 163.72521 * 6 5 4 31 31 H 0.97004 * 119.99238 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.02710 * 359.95955 * 18 17 15 33 33 H 1.07998 * 119.84137 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.81540 * 180.02562 * 20 19 18 35 35 H 0.96693 * 113.99726 * 269.71258 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3665 -0.4647 5 7 4.5824 1.3675 -0.4642 6 6 5.3141 1.8784 0.6977 7 6 5.2722 3.3848 0.6949 8 1 4.7523 3.9091 -0.0931 9 6 5.8969 4.0935 1.6992 10 7 5.8600 5.4082 1.6971 11 14 6.7956 3.1865 3.0627 12 1 8.2121 2.9780 2.6685 13 1 6.7422 3.9899 4.3105 14 1 6.1470 1.8708 3.2931 15 6 5.2570 0.8982 -1.5324 16 8 4.6559 0.5882 -2.5429 17 6 6.7249 0.7607 -1.4758 18 6 7.4883 1.6740 -0.7436 19 6 8.8586 1.5408 -0.6935 20 6 9.4857 0.5048 -1.3666 21 6 8.7430 -0.4087 -2.0907 22 9 9.3621 -1.4189 -2.7398 23 6 7.3609 -0.2856 -2.1558 24 8 6.6298 -1.1785 -2.8700 25 1 2.9718 -0.7723 -0.6770 26 1 2.9714 -0.1989 1.0081 27 1 2.7537 2.1395 0.2123 28 1 2.7539 1.5660 -1.4728 29 1 4.8525 1.5037 1.6113 30 1 6.3503 1.5435 0.6505 31 1 6.2998 5.9068 2.4034 32 1 7.0045 2.4837 -0.2176 33 1 9.4468 2.2473 -0.1268 34 1 10.5604 0.4079 -1.3215 35 1 6.4934 -0.9260 -3.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930481334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:18 Heat of formation + Delta-G solvation = -45.515802 kcal Electronic energy + Delta-G solvation = -23189.924156 eV Core-core repulsion = 19490.075171 eV Total energy + Delta-G solvation = -3699.848984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.80128 -40.37262 -38.36450 -36.80635 -36.64342 -35.38113 -33.10043 -31.98535 -30.18544 -29.60652 -28.10636 -24.91073 -23.33908 -22.40165 -22.35429 -19.48844 -18.19567 -17.69840 -17.47163 -17.03279 -16.59689 -15.98094 -15.80737 -15.44593 -15.15364 -14.65028 -14.62168 -14.29617 -14.04540 -13.65512 -13.51283 -13.10659 -12.89168 -12.69733 -12.40826 -12.23992 -11.99380 -11.81193 -11.60295 -11.25086 -11.22291 -10.78529 -10.70108 -10.47511 -10.38593 -9.83274 -9.43406 -8.99844 -8.79073 -8.41158 -8.07498 -6.44010 -4.48898 0.88024 1.18869 2.77493 2.91141 3.01079 3.06958 3.11836 3.14281 3.39035 3.74185 4.05222 4.06335 4.26333 4.46314 4.75175 4.83926 5.04904 5.14884 5.24560 5.27021 5.42118 5.60230 5.69088 5.88960 6.04895 6.12782 6.18198 6.21027 6.37798 6.47144 6.52330 6.85749 6.98444 7.19905 7.66871 7.68688 7.79435 8.16900 8.54629 8.65948 9.12249 10.67166 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.007817 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.183436 B = 3580.876399 C = 5856.674768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.221 3.779 3 C -0.047 4.047 4 C 0.128 3.872 5 N -0.581 5.581 6 C 0.177 3.823 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.877 5.877 11 Si 0.860 3.140 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.260 1.260 15 C 0.568 3.432 16 O -0.549 6.549 17 C -0.133 4.133 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.120 4.120 21 C 0.048 3.952 22 F -0.137 7.137 23 C 0.126 3.874 24 O -0.478 6.478 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.194 0.806 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 -8.582 -2.918 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.097 4.097 3 C -0.088 4.088 4 C 0.003 3.997 5 N -0.310 5.310 6 C 0.057 3.943 7 C -0.589 4.589 8 H 0.103 0.897 9 C -0.124 4.124 10 N -0.513 5.513 11 Si 0.685 3.315 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.184 1.184 15 C 0.357 3.643 16 O -0.429 6.429 17 C -0.137 4.137 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.139 4.139 21 C 0.028 3.972 22 F -0.116 7.116 23 C 0.078 3.922 24 O -0.289 6.289 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.211 0.789 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.712 -8.907 -2.827 10.465 hybrid contribution 1.202 -0.204 0.371 1.274 sum 5.913 -9.111 -2.456 11.136 Atomic orbital electron populations 1.81184 1.13011 1.08790 1.09442 1.29018 0.95031 0.92983 0.92676 1.19767 0.81562 1.02000 1.05470 1.21162 0.80393 0.94526 1.03607 1.47673 1.05647 1.59931 1.17749 1.20731 0.93852 0.95834 0.83898 1.21317 1.36749 0.88655 1.12151 0.89747 1.24903 0.95560 0.94725 0.97191 1.69880 1.42157 1.05762 1.33495 0.87084 0.81075 0.80754 0.82547 1.19181 1.20536 1.18386 1.17866 0.86217 0.77086 0.83172 1.90707 1.69705 1.51624 1.30837 1.20230 0.94627 0.96543 1.02261 1.22959 0.94005 0.99461 0.94078 1.21115 0.94809 0.97878 0.99720 1.21253 1.00657 0.94599 0.97373 1.17863 0.89676 0.89587 1.00040 1.91473 1.82574 1.57925 1.79595 1.18332 0.87423 0.90146 0.96276 1.84700 1.72639 1.44373 1.27195 0.87203 0.87153 0.88352 0.89682 0.94747 0.92407 0.91930 0.78936 0.84257 0.84443 0.74503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.36 18.54 42.15 0.78 -6.58 16 2 C 0.22 3.11 15.43 -20.76 -0.32 2.79 16 3 C -0.05 -0.58 5.99 -29.51 -0.18 -0.76 16 4 C 0.13 1.95 5.31 -4.04 -0.02 1.93 16 5 N -0.58 -10.16 2.50 -176.28 -0.44 -10.60 16 6 C 0.18 3.33 3.72 -5.19 -0.02 3.31 16 7 C -0.55 -12.54 8.10 -34.44 -0.28 -12.82 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 9 C 0.08 1.95 5.46 -17.82 -0.10 1.85 16 10 N -0.88 -22.95 13.96 55.43 0.77 -22.18 16 11 Si 0.86 17.26 27.47 -169.99 -4.67 12.59 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 15 C 0.57 10.32 7.25 -12.46 -0.09 10.23 16 16 O -0.55 -10.65 15.52 -12.87 -0.20 -10.85 16 17 C -0.13 -2.24 5.52 -104.86 -0.58 -2.82 16 18 C -0.09 -1.43 7.41 -39.19 -0.29 -1.72 16 19 C -0.12 -1.60 10.02 -39.64 -0.40 -2.00 16 20 C -0.12 -1.51 10.01 -39.47 -0.40 -1.90 16 21 C 0.05 0.69 7.30 -39.34 -0.29 0.40 16 22 F -0.14 -1.96 17.11 2.25 0.04 -1.92 16 23 C 0.13 1.96 6.69 -38.65 -0.26 1.70 16 24 O -0.48 -7.21 11.97 -36.99 -0.44 -7.65 16 25 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.10 1.53 7.93 -51.93 -0.41 1.11 16 28 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16 29 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 30 H 0.06 1.06 3.25 -52.15 -0.17 0.89 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.19 3.58 3.85 -52.49 -0.20 3.37 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.40 4.62 9.06 45.56 0.41 5.03 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -28.33 313.60 -5.06 -33.39 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.41 Total: 8.87 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.21 Total: 0.21 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.11 Total: -39.36 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.64 Total: -18.51 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -4.67 Total: 12.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.33 -5.06 -33.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930481334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds