Wall clock time and date at job start Tue Mar 31 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47129 * 161.20726 * 3 2 1 5 5 N 1.46497 * 109.47475 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99677 * 265.07837 * 5 4 3 7 7 C 1.50697 * 109.46897 * 283.72583 * 6 5 4 8 8 H 1.07998 * 120.00272 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99288 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00270 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47103 * 89.99935 * 11 9 7 13 13 H 1.48504 * 109.46920 * 209.99622 * 11 9 7 14 14 H 1.48492 * 109.47115 * 329.99211 * 11 9 7 15 15 C 1.34777 * 119.99973 * 85.07332 * 5 4 3 16 16 O 1.21589 * 120.00160 * 6.71311 * 15 5 4 17 17 C 1.47546 * 119.99781 * 186.70931 * 15 5 4 18 18 C 1.39746 * 120.18136 * 326.01123 * 17 15 5 19 19 C 1.37762 * 119.94922 * 179.97438 * 18 17 15 20 20 C 1.38550 * 120.31860 * 0.02562 * 19 18 17 21 21 C 1.38215 * 120.36735 * 359.73579 * 20 19 18 22 22 F 1.35096 * 119.97913 * 180.25893 * 21 20 19 23 23 C 1.38916 * 120.03847 * 0.52144 * 21 20 19 24 24 O 1.35712 * 120.15496 * 179.76818 * 23 21 20 25 25 H 1.09001 * 109.47565 * 41.20462 * 3 2 1 26 26 H 1.09005 * 109.46899 * 281.20336 * 3 2 1 27 27 H 1.09001 * 109.47112 * 59.99459 * 4 3 2 28 28 H 1.09006 * 109.46491 * 299.99936 * 4 3 2 29 29 H 1.08998 * 109.47252 * 43.73063 * 6 5 4 30 30 H 1.09005 * 109.46717 * 163.72521 * 6 5 4 31 31 H 0.97004 * 119.99238 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.02710 * 359.95955 * 18 17 15 33 33 H 1.07998 * 119.84137 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.81540 * 180.02562 * 20 19 18 35 35 H 0.96693 * 113.99726 * 269.71258 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3665 -0.4647 5 7 4.5824 1.3675 -0.4642 6 6 5.3141 1.8784 0.6977 7 6 5.2722 3.3848 0.6949 8 1 4.7523 3.9091 -0.0931 9 6 5.8969 4.0935 1.6992 10 7 5.8600 5.4082 1.6971 11 14 6.7956 3.1865 3.0627 12 1 8.2121 2.9780 2.6685 13 1 6.7422 3.9899 4.3105 14 1 6.1470 1.8708 3.2931 15 6 5.2570 0.8982 -1.5324 16 8 4.6559 0.5882 -2.5429 17 6 6.7249 0.7607 -1.4758 18 6 7.4883 1.6740 -0.7436 19 6 8.8586 1.5408 -0.6935 20 6 9.4857 0.5048 -1.3666 21 6 8.7430 -0.4087 -2.0907 22 9 9.3621 -1.4189 -2.7398 23 6 7.3609 -0.2856 -2.1558 24 8 6.6298 -1.1785 -2.8700 25 1 2.9718 -0.7723 -0.6770 26 1 2.9714 -0.1989 1.0081 27 1 2.7537 2.1395 0.2123 28 1 2.7539 1.5660 -1.4728 29 1 4.8525 1.5037 1.6113 30 1 6.3503 1.5435 0.6505 31 1 6.2998 5.9068 2.4034 32 1 7.0045 2.4837 -0.2176 33 1 9.4468 2.2473 -0.1268 34 1 10.5604 0.4079 -1.3215 35 1 6.4934 -0.9260 -3.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930481334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:18 Heat of formation + Delta-G solvation = -62.765556 kcal Electronic energy + Delta-G solvation = -23190.672161 eV Core-core repulsion = 19490.075171 eV Total energy + Delta-G solvation = -3700.596990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.90317 -41.66490 -39.60550 -38.02768 -37.85159 -36.77538 -34.73743 -33.33116 -31.38915 -30.78091 -29.67871 -26.12710 -24.82912 -23.74299 -23.53834 -20.78098 -19.37139 -19.14198 -18.76911 -18.48849 -17.81469 -17.13381 -17.04965 -16.77533 -16.29508 -16.13009 -15.82507 -15.63494 -15.30166 -14.95013 -14.68081 -14.55751 -14.17935 -14.12265 -13.63913 -13.52598 -13.16057 -13.14614 -12.77821 -12.71809 -12.65710 -12.07812 -12.01628 -11.85524 -11.75089 -11.56365 -10.82626 -10.71761 -9.97245 -9.59849 -9.50948 -8.25983 -6.35064 -0.27461 0.04668 1.46574 1.51049 1.56494 1.59394 1.76129 1.79387 2.11058 2.39424 2.52776 2.92976 3.07781 3.11880 3.32567 3.55626 3.95160 4.02760 4.08975 4.14041 4.30662 4.51893 4.58555 4.68600 4.79442 4.90449 4.93259 5.03969 5.04981 5.21321 5.37316 5.42033 5.62916 5.74079 6.15855 6.52136 6.55914 6.64500 6.74455 7.15182 7.31964 8.89084 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.007817 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.183436 B = 3580.876399 C = 5856.674768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.244 3.756 3 C -0.031 4.031 4 C 0.124 3.876 5 N -0.583 5.583 6 C 0.184 3.816 7 C -0.542 4.542 8 H 0.036 0.964 9 C 0.031 3.969 10 N -0.934 5.934 11 Si 0.918 3.082 12 H -0.243 1.243 13 H -0.293 1.293 14 H -0.235 1.235 15 C 0.563 3.437 16 O -0.569 6.569 17 C -0.151 4.151 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.099 4.099 21 C 0.047 3.953 22 F -0.136 7.136 23 C 0.121 3.879 24 O -0.489 6.489 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.269 0.731 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -10.721 -2.065 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.072 4.072 4 C 0.000 4.000 5 N -0.312 5.312 6 C 0.063 3.937 7 C -0.580 4.580 8 H 0.055 0.945 9 C -0.170 4.170 10 N -0.573 5.573 11 Si 0.740 3.260 12 H -0.167 1.167 13 H -0.219 1.219 14 H -0.158 1.158 15 C 0.353 3.647 16 O -0.450 6.450 17 C -0.155 4.155 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.027 3.973 22 F -0.115 7.115 23 C 0.073 3.927 24 O -0.301 6.301 25 H 0.138 0.862 26 H 0.155 0.845 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.071 -11.073 -1.999 13.290 hybrid contribution 0.480 0.495 -0.041 0.690 sum 7.551 -10.579 -2.039 13.156 Atomic orbital electron populations 1.81210 1.14300 1.10086 1.11011 1.29184 0.95070 0.91709 0.91312 1.19705 0.80192 1.00173 1.07085 1.21191 0.79574 0.96209 1.03034 1.47677 1.06310 1.59727 1.17441 1.20615 0.95280 0.92984 0.84847 1.21382 1.35305 0.90826 1.10467 0.94518 1.25698 0.96408 0.95133 0.99741 1.70045 1.44419 1.07933 1.34877 0.86145 0.81205 0.80161 0.78485 1.16685 1.21911 1.15800 1.18188 0.87065 0.76656 0.82832 1.90684 1.70353 1.52644 1.31330 1.20151 0.93726 0.97818 1.03811 1.22715 0.95376 0.98963 0.94912 1.21344 0.93655 0.98361 0.99446 1.21586 1.02338 0.92770 0.95038 1.17969 0.89221 0.89915 1.00183 1.91482 1.82381 1.57973 1.79626 1.18407 0.88118 0.89892 0.96243 1.84655 1.72842 1.44443 1.28194 0.86230 0.84511 0.89074 0.90775 0.93193 0.90663 0.92133 0.81305 0.81943 0.80695 0.73101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.89 18.54 20.01 0.37 -15.52 16 2 C 0.24 6.65 15.43 89.44 1.38 8.03 16 3 C -0.03 -0.71 5.99 28.79 0.17 -0.54 16 4 C 0.12 3.79 5.31 86.38 0.46 4.25 16 5 N -0.58 -20.15 2.50 -829.89 -2.08 -22.22 16 6 C 0.18 6.69 3.72 85.63 0.32 7.01 16 7 C -0.54 -25.12 8.10 25.60 0.21 -24.91 16 8 H 0.04 2.01 8.06 -2.91 -0.02 1.98 16 9 C 0.03 1.47 5.46 84.66 0.46 1.94 16 10 N -0.93 -50.46 13.96 21.45 0.30 -50.16 16 11 Si 0.92 34.14 27.47 68.60 1.88 36.02 16 12 H -0.24 -8.09 7.11 99.48 0.71 -7.38 16 13 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 14 H -0.24 -7.75 6.54 99.48 0.65 -7.10 16 15 C 0.56 20.23 7.25 86.70 0.63 20.86 16 16 O -0.57 -22.07 15.52 13.36 0.21 -21.87 16 17 C -0.15 -4.91 5.52 -20.02 -0.11 -5.02 16 18 C -0.10 -3.14 7.41 22.52 0.17 -2.97 16 19 C -0.11 -2.61 10.02 22.23 0.22 -2.39 16 20 C -0.10 -2.05 10.01 22.34 0.22 -1.82 16 21 C 0.05 1.19 7.30 22.43 0.16 1.35 16 22 F -0.14 -3.45 17.11 44.97 0.77 -2.68 16 23 C 0.12 3.54 6.69 22.87 0.15 3.69 16 24 O -0.49 -14.04 11.97 -72.97 -0.87 -14.92 16 25 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.09 2.88 7.93 -2.39 -0.02 2.86 16 28 H 0.07 2.40 7.49 -2.38 -0.02 2.38 16 29 H 0.05 1.69 7.20 -2.39 -0.02 1.67 16 30 H 0.08 2.59 3.25 -2.60 -0.01 2.58 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.17 6.13 3.85 -2.91 -0.01 6.12 16 33 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.41 9.13 9.06 -74.06 -0.67 8.46 16 Total: -1.00 -63.07 313.60 5.47 -57.60 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.44 Total: 24.27 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.45 Total: 9.47 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.41 Total: -87.90 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.67 Total: -36.78 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.77 Total: -2.68 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 1.88 Total: 36.02 kcal Total: -63.07 5.47 -57.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930481334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.168 kcal (2) G-P(sol) polarization free energy of solvation -63.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds