Wall clock time and date at job start Tue Mar 31 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47315 * 2 1 4 4 C 1.53000 * 109.47320 * 240.00234 * 2 1 3 5 5 C 1.50702 * 109.47456 * 185.00250 * 4 2 1 6 6 C 1.33852 * 124.51674 * 89.71700 * 5 4 2 7 7 C 1.37438 * 115.10494 * 179.82681 * 6 5 4 8 8 C 1.36766 * 113.28235 * 0.45980 * 7 6 5 9 9 C 1.46459 * 125.46488 * 179.79289 * 8 7 6 10 10 O 1.21744 * 119.99930 * 6.97735 * 9 8 7 11 11 N 1.34775 * 120.00202 * 186.97401 * 9 8 7 12 12 C 1.36879 * 120.00270 * 185.30064 * 11 9 8 13 13 H 1.08008 * 119.99867 * 343.67944 * 12 11 9 14 14 C 1.39006 * 120.00254 * 163.68666 * 12 11 9 15 15 N 1.31400 * 119.99716 * 338.71631 * 14 12 11 16 16 Si 1.86800 * 120.00155 * 158.72218 * 14 12 11 17 17 H 1.48501 * 109.47149 * 59.99933 * 16 14 12 18 18 H 1.48496 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47212 * 299.99603 * 16 14 12 20 20 C 1.46504 * 119.99536 * 5.30247 * 11 9 8 21 21 C 1.47196 * 109.47232 * 276.38951 * 20 11 9 22 22 N 6.25252 * 129.98940 * 288.64441 * 2 1 3 23 23 S 1.70610 * 124.51318 * 270.02509 * 5 4 2 24 24 H 1.08994 * 109.46741 * 59.99876 * 1 2 3 25 25 H 1.08996 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46808 * 299.99809 * 1 2 3 27 27 H 1.08998 * 109.47176 * 119.99925 * 2 1 3 28 28 H 1.08998 * 109.46937 * 300.00071 * 3 2 1 29 29 H 1.09004 * 109.46734 * 59.99863 * 3 2 1 30 30 H 1.09001 * 109.47126 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46554 * 304.99826 * 4 2 1 32 32 H 1.08995 * 109.47047 * 64.99590 * 4 2 1 33 33 H 1.07997 * 122.44346 * 0.02562 * 6 5 4 34 34 H 1.08007 * 123.36010 * 180.20957 * 7 6 5 35 35 H 0.97003 * 120.00246 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47338 * 36.39819 * 20 11 9 37 37 H 1.09006 * 109.46604 * 156.39495 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.8294 -1.1889 6 6 4.2072 -1.8488 -0.6322 7 6 5.5770 -1.7513 -0.6885 8 6 6.0129 -0.6099 -1.3028 9 6 7.4144 -0.2349 -1.5034 10 8 8.3008 -1.0213 -1.2243 11 7 7.7228 0.9808 -1.9968 12 6 9.0239 1.2920 -2.2862 13 1 9.8254 0.6886 -1.8860 14 6 9.3139 2.3847 -3.0951 15 7 8.3985 2.8612 -3.9085 16 14 11.0048 3.1756 -3.0258 17 1 12.0359 2.1726 -3.3946 18 1 11.0585 4.3133 -3.9786 19 1 11.2643 3.6693 -1.6495 20 6 6.6653 1.9691 -2.2234 21 6 6.0349 1.7221 -3.5304 22 7 5.5482 1.5315 -4.5391 23 16 4.6209 0.3348 -1.8144 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.7042 -2.6882 -0.1752 34 1 6.2427 -2.4995 -0.2840 35 1 8.6009 3.6234 -4.4733 36 1 5.9155 1.8858 -1.4367 37 1 7.0954 2.9706 -2.2110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931297440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:26 Heat of formation + Delta-G solvation = 24.932279 kcal Electronic energy + Delta-G solvation = -21047.982353 eV Core-core repulsion = 17917.401403 eV Total energy + Delta-G solvation = -3130.580950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.00230 -37.96253 -36.12406 -35.49547 -34.44038 -32.08237 -30.31457 -27.82147 -27.23743 -26.84176 -24.77551 -23.10798 -20.92118 -20.25010 -18.19299 -17.84046 -17.56385 -16.55134 -15.67460 -15.30799 -14.91200 -14.47319 -14.32151 -14.01858 -13.60971 -13.58239 -13.36531 -12.76219 -12.48447 -12.36666 -12.13535 -12.04089 -11.91053 -11.75546 -11.55721 -11.40634 -11.23034 -11.02356 -10.85231 -10.71827 -10.68491 -10.53500 -10.46690 -10.05930 -9.39210 -8.81968 -8.26950 -8.11485 -7.92987 -6.65983 -4.08906 1.05511 1.97592 2.39172 2.87541 3.12095 3.15741 3.18379 3.53051 3.85981 4.02097 4.08577 4.66151 4.74699 4.77511 4.82040 4.86812 5.03843 5.32412 5.41031 5.52583 5.54319 5.60066 5.72909 5.78113 5.81217 5.88012 5.90986 5.99169 6.10037 6.23819 6.29245 6.35430 6.45385 6.65473 6.86713 7.33046 7.76599 8.14492 8.59471 8.85022 9.02250 9.59536 10.39264 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.004922 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.259424 B = 5687.590798 C = 6250.531452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.156 4.156 4 C -0.041 4.041 5 C -0.241 4.241 6 C -0.145 4.145 7 C -0.088 4.088 8 C -0.230 4.230 9 C 0.514 3.486 10 O -0.565 6.565 11 N -0.428 5.428 12 C -0.308 4.308 13 H 0.115 0.885 14 C 0.032 3.968 15 N -0.870 5.870 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.206 3.794 21 C 0.238 3.762 22 N -0.449 5.449 23 S 0.205 5.795 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.278 0.722 36 H 0.090 0.910 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 -0.118 7.611 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.213 4.213 4 C -0.080 4.080 5 C -0.360 4.360 6 C -0.176 4.176 7 C -0.120 4.120 8 C -0.351 4.351 9 C 0.304 3.696 10 O -0.450 6.450 11 N -0.147 5.147 12 C -0.436 4.436 13 H 0.133 0.867 14 C -0.173 4.173 15 N -0.508 5.508 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.194 1.194 20 C 0.076 3.924 21 C -0.081 4.081 22 N -0.129 5.129 23 S 0.476 5.524 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.012 0.735 5.374 14.097 hybrid contribution 1.067 -0.909 0.861 1.645 sum -11.944 -0.174 6.235 13.475 Atomic orbital electron populations 1.21842 0.95154 1.01582 1.01790 1.21114 0.95223 0.96735 0.97981 1.21992 1.02148 0.95553 1.01655 1.20178 0.88297 1.01257 0.98297 1.24580 1.01187 1.02478 1.07768 1.19779 0.93371 1.00043 1.04371 1.20544 0.94785 0.97221 0.99452 1.25032 0.97416 1.01789 1.10844 1.16796 0.85740 0.82130 0.84964 1.90677 1.47609 1.50336 1.56334 1.43532 1.06909 1.09643 1.54603 1.19795 0.82238 1.12505 1.29021 0.86721 1.25378 1.00316 0.97727 0.93860 1.69867 1.35525 1.24995 1.20383 0.85866 0.81178 0.78642 0.78429 1.19555 1.20779 1.19415 1.19078 0.88931 0.98275 0.86101 1.28854 0.91284 0.92968 0.95035 1.80892 1.12428 1.08516 1.11037 1.83797 0.93769 1.20167 1.54694 0.92673 0.92791 0.92628 0.90899 0.92635 0.92653 0.91795 0.90665 0.91137 0.85227 0.83736 0.91119 0.89363 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.93 2.91 -90.62 -0.26 -1.19 16 3 C -0.16 -1.64 8.88 37.16 0.33 -1.31 16 4 C -0.04 -0.48 5.12 -27.88 -0.14 -0.62 16 5 C -0.24 -3.55 4.91 -35.85 -0.18 -3.72 16 6 C -0.14 -2.19 9.99 -41.41 -0.41 -2.60 16 7 C -0.09 -1.57 10.02 -40.41 -0.40 -1.97 16 8 C -0.23 -4.66 6.17 -36.81 -0.23 -4.89 16 9 C 0.51 12.48 7.52 -12.95 -0.10 12.39 16 10 O -0.57 -15.40 16.48 5.15 0.08 -15.31 16 11 N -0.43 -10.30 2.60 -119.50 -0.31 -10.61 16 12 C -0.31 -7.88 9.36 -15.01 -0.14 -8.02 16 13 H 0.12 3.07 7.34 -52.48 -0.38 2.68 16 14 C 0.03 0.77 4.88 -17.45 -0.09 0.68 16 15 N -0.87 -21.26 9.46 55.50 0.52 -20.74 16 16 Si 0.93 19.00 29.60 -169.99 -5.03 13.96 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 C 0.21 4.21 4.73 -6.83 -0.03 4.18 16 21 C 0.24 5.26 10.41 -20.76 -0.22 5.04 16 22 N -0.45 -10.44 18.53 42.15 0.78 -9.66 16 23 S 0.21 3.49 14.25 -107.50 -1.53 1.95 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.76 6.12 -51.93 -0.32 0.44 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.14 2.52 8.06 -52.48 -0.42 2.10 16 35 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.09 1.54 5.10 -27.16 -0.14 1.40 16 37 H 0.14 2.90 6.30 -51.93 -0.33 2.58 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -29.32 320.77 -6.71 -36.03 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.53 Total: 2.44 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.53 Total: -2.91 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 1.00 Total: -41.00 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.53 Total: 1.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.32 -6.71 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.966 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds