Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47315 * 2 1 4 4 C 1.53000 * 109.47320 * 240.00234 * 2 1 3 5 5 C 1.50702 * 109.47456 * 185.00250 * 4 2 1 6 6 C 1.33852 * 124.51674 * 89.71700 * 5 4 2 7 7 C 1.37438 * 115.10494 * 179.82681 * 6 5 4 8 8 C 1.36766 * 113.28235 * 0.45980 * 7 6 5 9 9 C 1.46459 * 125.46488 * 179.79289 * 8 7 6 10 10 O 1.21744 * 119.99930 * 6.97735 * 9 8 7 11 11 N 1.34775 * 120.00202 * 186.97401 * 9 8 7 12 12 C 1.36879 * 120.00270 * 185.30064 * 11 9 8 13 13 H 1.08008 * 119.99867 * 343.67944 * 12 11 9 14 14 C 1.39006 * 120.00254 * 163.68666 * 12 11 9 15 15 N 1.31400 * 119.99716 * 338.71631 * 14 12 11 16 16 Si 1.86800 * 120.00155 * 158.72218 * 14 12 11 17 17 H 1.48501 * 109.47149 * 59.99933 * 16 14 12 18 18 H 1.48496 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47212 * 299.99603 * 16 14 12 20 20 C 1.46504 * 119.99536 * 5.30247 * 11 9 8 21 21 C 1.47196 * 109.47232 * 276.38951 * 20 11 9 22 22 N 6.25252 * 129.98940 * 288.64441 * 2 1 3 23 23 S 1.70610 * 124.51318 * 270.02509 * 5 4 2 24 24 H 1.08994 * 109.46741 * 59.99876 * 1 2 3 25 25 H 1.08996 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46808 * 299.99809 * 1 2 3 27 27 H 1.08998 * 109.47176 * 119.99925 * 2 1 3 28 28 H 1.08998 * 109.46937 * 300.00071 * 3 2 1 29 29 H 1.09004 * 109.46734 * 59.99863 * 3 2 1 30 30 H 1.09001 * 109.47126 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46554 * 304.99826 * 4 2 1 32 32 H 1.08995 * 109.47047 * 64.99590 * 4 2 1 33 33 H 1.07997 * 122.44346 * 0.02562 * 6 5 4 34 34 H 1.08007 * 123.36010 * 180.20957 * 7 6 5 35 35 H 0.97003 * 120.00246 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47338 * 36.39819 * 20 11 9 37 37 H 1.09006 * 109.46604 * 156.39495 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.8294 -1.1889 6 6 4.2072 -1.8488 -0.6322 7 6 5.5770 -1.7513 -0.6885 8 6 6.0129 -0.6099 -1.3028 9 6 7.4144 -0.2349 -1.5034 10 8 8.3008 -1.0213 -1.2243 11 7 7.7228 0.9808 -1.9968 12 6 9.0239 1.2920 -2.2862 13 1 9.8254 0.6886 -1.8860 14 6 9.3139 2.3847 -3.0951 15 7 8.3985 2.8612 -3.9085 16 14 11.0048 3.1756 -3.0258 17 1 12.0359 2.1726 -3.3946 18 1 11.0585 4.3133 -3.9786 19 1 11.2643 3.6693 -1.6495 20 6 6.6653 1.9691 -2.2234 21 6 6.0349 1.7221 -3.5304 22 7 5.5482 1.5315 -4.5391 23 16 4.6209 0.3348 -1.8144 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.7042 -2.6882 -0.1752 34 1 6.2427 -2.4995 -0.2840 35 1 8.6009 3.6234 -4.4733 36 1 5.9155 1.8858 -1.4367 37 1 7.0954 2.9706 -2.2110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = 9.153816 kcal Electronic energy + Delta-G solvation = -21048.666559 eV Core-core repulsion = 17917.401403 eV Total energy + Delta-G solvation = -3131.265156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77701 -39.21167 -37.70450 -36.75362 -36.26816 -33.93664 -31.55701 -29.52172 -28.28519 -27.96993 -26.38209 -24.40715 -22.47221 -21.15869 -19.98978 -19.31283 -19.13355 -18.28741 -17.11775 -16.78935 -16.31075 -15.81590 -15.63367 -15.34969 -15.21835 -15.19514 -14.52421 -14.22779 -13.97470 -13.61046 -13.57323 -13.31586 -13.25136 -13.11031 -12.89446 -12.81864 -12.61765 -12.43526 -12.35013 -12.13075 -11.83869 -11.72948 -11.54649 -11.37122 -11.19849 -10.71039 -10.10435 -9.50593 -9.32902 -8.50769 -6.03903 -0.35670 0.55994 1.03002 1.38116 1.47376 1.56689 1.58268 1.78963 2.14552 2.30549 2.33881 2.89237 2.99487 3.34369 3.76459 3.90634 4.01577 4.07387 4.26259 4.35377 4.48651 4.53320 4.68456 4.78557 4.79848 4.88500 4.98569 5.08251 5.09322 5.17563 5.28507 5.33298 5.40173 5.46602 5.52208 5.59975 5.92051 6.27880 6.82916 6.96477 7.16816 7.74356 8.53140 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.004922 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.259424 B = 5687.590798 C = 6250.531452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.161 4.161 4 C -0.044 4.044 5 C -0.211 4.211 6 C -0.151 4.151 7 C -0.071 4.071 8 C -0.282 4.282 9 C 0.507 3.493 10 O -0.612 6.612 11 N -0.440 5.440 12 C -0.347 4.347 13 H 0.090 0.910 14 C 0.009 3.991 15 N -0.886 5.886 16 Si 0.995 3.005 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.259 1.259 20 C 0.209 3.791 21 C 0.249 3.751 22 N -0.473 5.473 23 S 0.209 5.791 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.282 0.718 36 H 0.121 0.879 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 0.061 8.329 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.218 4.218 4 C -0.083 4.083 5 C -0.331 4.331 6 C -0.180 4.180 7 C -0.105 4.105 8 C -0.402 4.402 9 C 0.298 3.702 10 O -0.500 6.500 11 N -0.158 5.158 12 C -0.474 4.474 13 H 0.108 0.892 14 C -0.195 4.195 15 N -0.523 5.523 16 Si 0.818 3.182 17 H -0.205 1.205 18 H -0.197 1.197 19 H -0.183 1.183 20 C 0.081 3.919 21 C -0.070 4.070 22 N -0.154 5.154 23 S 0.480 5.520 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.490 0.944 6.083 16.669 hybrid contribution 1.657 -1.064 0.679 2.083 sum -13.833 -0.120 6.762 15.398 Atomic orbital electron populations 1.21807 0.93388 1.02458 1.02334 1.21100 0.96615 0.95987 0.96993 1.22040 1.01055 0.96302 1.02436 1.20394 0.85665 1.02964 0.99312 1.25021 1.02622 1.00688 1.04737 1.20008 0.91942 1.01357 1.04721 1.20833 0.96357 0.95928 0.97351 1.24705 0.96513 1.04150 1.14829 1.17395 0.87197 0.81719 0.83880 1.90613 1.49610 1.51609 1.58139 1.43635 1.07178 1.10320 1.54657 1.19720 0.82792 1.13851 1.31007 0.89227 1.26047 1.03569 0.97119 0.92718 1.69928 1.36921 1.25098 1.20375 0.84959 0.76763 0.77514 0.78948 1.20527 1.19748 1.18318 1.19259 0.88901 0.97375 0.86385 1.29088 0.90660 0.92204 0.95036 1.80876 1.13454 1.09367 1.11665 1.83620 0.92931 1.20697 1.54780 0.92511 0.91778 0.91791 0.90772 0.92516 0.91377 0.93475 0.88400 0.90881 0.81640 0.83893 0.90780 0.86282 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.09 -1.46 2.91 -10.79 -0.03 -1.49 16 3 C -0.16 -2.96 8.88 71.98 0.64 -2.32 16 4 C -0.04 -0.86 5.12 29.85 0.15 -0.71 16 5 C -0.21 -5.62 4.91 24.69 0.12 -5.50 16 6 C -0.15 -4.12 9.99 21.08 0.21 -3.91 16 7 C -0.07 -2.48 10.02 21.74 0.22 -2.26 16 8 C -0.28 -11.52 6.17 24.07 0.15 -11.37 16 9 C 0.51 25.63 7.52 86.38 0.65 26.28 16 10 O -0.61 -35.17 16.48 -4.49 -0.07 -35.24 16 11 N -0.44 -21.93 2.60 -650.17 -1.69 -23.62 16 12 C -0.35 -18.48 9.36 84.09 0.79 -17.69 16 13 H 0.09 5.11 7.34 -2.91 -0.02 5.09 16 14 C 0.01 0.43 4.88 84.94 0.41 0.85 16 15 N -0.89 -43.56 9.46 21.67 0.20 -43.35 16 16 Si 1.00 39.28 29.60 68.60 2.03 41.32 16 17 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 C 0.21 8.69 4.73 84.57 0.40 9.09 16 21 C 0.25 11.05 10.41 89.44 0.93 11.98 16 22 N -0.47 -22.02 18.53 20.00 0.37 -21.65 16 23 S 0.21 6.88 14.25 -56.49 -0.81 6.07 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.02 6.12 -2.39 -0.01 1.00 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.14 4.98 8.06 -2.91 -0.02 4.95 16 35 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.12 4.15 5.10 -18.14 -0.09 4.05 16 37 H 0.14 5.90 6.30 -2.38 -0.02 5.88 16 Total: -1.00 -65.28 320.77 6.35 -58.94 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.00 Total: 15.73 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.30 Total: 1.81 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.11 Total: -88.62 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.07 Total: -35.24 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -0.81 Total: 6.07 kcal Total: -65.28 6.35 -58.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.091 kcal (2) G-P(sol) polarization free energy of solvation -65.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds