Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37474 * 123.35355 * 2 1 4 4 C 1.33817 * 115.09979 * 180.27248 * 3 2 1 5 5 S 1.70617 * 110.95500 * 359.74709 * 4 3 2 6 6 C 1.36647 * 123.34831 * 179.80029 * 2 1 3 7 7 C 1.46586 * 125.46156 * 0.02562 * 6 2 1 8 8 O 1.21708 * 119.99463 * 359.72036 * 7 6 2 9 9 N 1.34773 * 120.00444 * 179.72007 * 7 6 2 10 10 C 1.46497 * 120.00197 * 180.02562 * 9 7 6 11 11 H 1.09003 * 115.51384 * 350.41219 * 10 9 7 12 12 C 1.53001 * 117.44106 * 205.00079 * 10 9 7 13 13 H 1.09002 * 119.53987 * 4.15796 * 12 10 9 14 14 C 1.54391 * 118.12276 * 159.25371 * 12 10 9 15 15 N 1.51826 * 102.86597 * 88.01620 * 14 12 10 16 16 C 1.36943 * 127.61033 * 140.54207 * 15 14 12 17 17 H 1.07994 * 119.99697 * 179.66525 * 16 15 14 18 18 C 1.38808 * 119.99940 * 359.67089 * 16 15 14 19 19 N 1.31624 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47548 * 119.99631 * 20 18 16 23 23 H 1.48507 * 109.47147 * 239.99977 * 20 18 16 24 24 C 1.48144 * 104.55308 * 320.27435 * 15 14 12 25 25 C 1.52992 * 117.40891 * 135.77194 * 10 9 7 26 26 H 1.09007 * 119.54057 * 355.89599 * 25 10 9 27 27 H 1.09001 * 109.47161 * 270.20611 * 1 2 3 28 28 H 1.09004 * 109.46644 * 30.20146 * 1 2 3 29 29 H 1.08994 * 109.46954 * 150.19902 * 1 2 3 30 30 H 1.07992 * 122.45092 * 359.97438 * 3 2 1 31 31 H 1.07994 * 124.52425 * 179.73204 * 4 3 2 32 32 H 0.97005 * 119.99799 * 0.02562 * 9 7 6 33 33 H 1.08992 * 110.40800 * 207.99366 * 14 12 10 34 34 H 1.08999 * 110.40393 * 330.42441 * 14 12 10 35 35 H 0.96995 * 119.99945 * 180.02562 * 19 18 16 36 36 H 1.09002 * 110.40706 * 281.07236 * 24 15 14 37 37 H 1.09001 * 110.41178 * 158.64223 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9562 -0.0058 5 16 3.9623 -0.7082 -0.0046 6 6 2.2582 -1.1415 0.0040 7 6 1.7284 -2.5082 0.0082 8 8 0.5256 -2.6945 0.0135 9 7 2.5730 -3.5585 0.0062 10 6 2.0434 -4.9244 0.0099 11 1 0.9699 -5.0113 0.1780 12 6 2.9381 -6.0260 0.5816 13 1 3.8979 -5.7623 1.0258 14 6 2.2699 -7.3374 1.0479 15 7 2.2455 -8.1734 -0.2192 16 6 2.4823 -9.5169 -0.3387 17 1 2.4268 -9.9909 -1.3075 18 6 2.7934 -10.2695 0.7853 19 7 2.8615 -9.6917 1.9660 20 14 3.1157 -12.1023 0.6225 21 1 2.9775 -12.5047 -0.8003 22 1 4.4911 -12.4067 1.0921 23 1 2.1339 -12.8526 1.4463 24 6 1.9023 -7.2122 -1.2929 25 6 2.6925 -5.9340 -0.9388 26 1 3.4696 -5.6018 -1.6273 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3633 -0.8917 -0.5107 30 1 1.8203 2.1334 -0.0004 31 1 4.3206 1.7489 -0.0108 32 1 3.5316 -3.4100 0.0024 33 1 2.8578 -7.8032 1.8387 34 1 1.2537 -7.1448 1.3917 35 1 3.0793 -10.2176 2.7514 36 1 0.8314 -7.0090 -1.2932 37 1 2.2173 -7.5972 -2.2628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958072055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 62.091863 kcal Electronic energy + Delta-G solvation = -20254.937039 eV Core-core repulsion = 17125.967450 eV Total energy + Delta-G solvation = -3128.969590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98809 -38.64498 -37.59364 -34.40942 -32.68725 -31.11841 -30.27712 -28.25856 -27.04563 -25.63355 -23.85277 -22.39888 -20.94698 -20.45442 -19.20924 -18.78251 -18.29420 -16.91585 -16.17733 -15.96719 -15.24699 -15.08963 -14.67487 -13.94207 -13.70752 -13.59656 -13.29653 -13.22769 -12.72553 -12.55809 -12.30588 -12.17981 -11.95033 -11.49415 -11.31385 -11.12985 -11.10719 -10.86350 -10.34154 -10.18776 -10.03133 -9.86364 -9.67402 -9.19724 -9.08565 -8.81799 -8.68482 -8.33788 -6.92481 -5.66703 -3.10729 0.30367 1.24936 1.63940 2.16211 3.07757 3.12068 3.39536 3.44681 3.47228 4.34570 4.46893 4.60095 4.71888 4.97984 5.09340 5.16616 5.33999 5.37709 5.42645 5.57706 5.60706 5.69918 5.80372 5.81580 5.90814 6.08484 6.14457 6.24928 6.38302 6.54604 6.67571 6.80497 6.89141 7.32097 7.51198 7.54843 7.79106 8.19715 8.27150 9.12082 9.76227 10.47347 11.36795 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.003009 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.203360 B = 9303.772499 C = 9590.584719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.023 4.023 3 C -0.148 4.148 4 C -0.229 4.229 5 S 0.194 5.806 6 C -0.269 4.269 7 C 0.592 3.408 8 O -0.525 6.525 9 N -0.693 5.693 10 C 0.093 3.907 11 H 0.133 0.867 12 C -0.171 4.171 13 H 0.102 0.898 14 C 0.156 3.844 15 N -0.601 5.601 16 C -0.214 4.214 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.918 3.082 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.161 3.839 25 C -0.185 4.185 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.395 0.605 33 H 0.137 0.863 34 H 0.019 0.981 35 H 0.253 0.747 36 H 0.028 0.972 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 22.079 -3.454 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.180 4.180 4 C -0.367 4.367 5 S 0.462 5.538 6 C -0.389 4.389 7 C 0.379 3.621 8 O -0.403 6.403 9 N -0.341 5.341 10 C -0.012 4.012 11 H 0.151 0.849 12 C -0.192 4.192 13 H 0.120 0.880 14 C 0.032 3.968 15 N -0.325 5.325 16 C -0.342 4.342 17 H 0.098 0.902 18 C -0.210 4.210 19 N -0.572 5.572 20 Si 0.749 3.251 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.034 3.966 25 C -0.206 4.206 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.162 0.838 31 H 0.186 0.814 32 H 0.229 0.771 33 H 0.154 0.846 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.836 20.840 -3.350 21.297 hybrid contribution -0.312 0.361 -0.103 0.488 sum 2.524 21.201 -3.454 21.629 Atomic orbital electron populations 1.20751 0.88587 1.03960 1.03150 1.19553 0.97990 0.90332 0.95903 1.19938 0.92571 0.99681 1.05777 1.25247 1.00681 1.01781 1.08967 1.83056 1.04268 0.98303 1.68180 1.24473 0.97139 0.97469 1.19844 1.16856 0.86235 0.82585 0.76433 1.90780 1.14244 1.85105 1.50165 1.45283 1.09102 1.05399 1.74304 1.21954 0.98315 0.76741 1.04236 0.84916 1.24660 1.00554 0.97399 0.96564 0.88025 1.22561 0.97689 0.84785 0.91765 1.46142 1.80807 1.03924 1.01658 1.19166 1.39233 0.81612 0.94160 0.90170 1.24760 1.02517 0.98495 0.95203 1.69492 1.55802 1.33761 0.98100 0.85938 0.77500 0.84430 0.77268 1.20545 1.21774 1.21734 1.21077 0.95418 0.87296 0.92826 1.24405 1.03706 0.98427 0.94108 0.87972 0.90596 0.91732 0.88701 0.83785 0.81414 0.77074 0.84581 0.96342 0.93623 0.95476 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.55 36.01 0.34 -0.79 16 2 C -0.02 -0.26 5.90 -105.47 -0.62 -0.88 16 3 C -0.15 -1.31 9.97 -41.41 -0.41 -1.72 16 4 C -0.23 -1.82 10.92 29.18 0.32 -1.50 16 5 S 0.19 1.77 22.16 -107.50 -2.38 -0.61 16 6 C -0.27 -3.35 6.45 -36.79 -0.24 -3.58 16 7 C 0.59 9.07 7.78 -12.90 -0.10 8.97 16 8 O -0.52 -9.51 13.81 5.18 0.07 -9.44 16 9 N -0.69 -10.16 5.56 -55.15 -0.31 -10.47 16 10 C 0.09 1.62 5.97 -67.94 -0.41 1.22 16 11 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 12 C -0.17 -3.31 6.96 -89.22 -0.62 -3.94 16 13 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 14 C 0.16 3.78 6.43 -0.29 0.00 3.78 16 15 N -0.60 -15.47 3.46 -165.71 -0.57 -16.05 16 16 C -0.21 -5.94 10.42 -15.06 -0.16 -6.09 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.92 -26.60 10.12 55.49 0.56 -26.03 16 20 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.16 3.42 7.05 -2.41 -0.02 3.41 16 25 C -0.18 -3.40 7.06 -89.22 -0.63 -4.03 16 26 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.24 6.02 -51.93 -0.31 0.92 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.40 4.86 7.94 -40.82 -0.32 4.54 16 33 H 0.14 3.67 5.34 -51.93 -0.28 3.39 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -31.26 321.88 -10.09 -41.35 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.65 Total: 5.13 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.64 Total: -5.67 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.32 Total: -52.55 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.26 -10.09 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.445 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds