Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37474 * 123.35355 * 2 1 4 4 C 1.33817 * 115.09979 * 180.27248 * 3 2 1 5 5 S 1.70617 * 110.95500 * 359.74709 * 4 3 2 6 6 C 1.36647 * 123.34831 * 179.80029 * 2 1 3 7 7 C 1.46586 * 125.46156 * 0.02562 * 6 2 1 8 8 O 1.21708 * 119.99463 * 359.72036 * 7 6 2 9 9 N 1.34773 * 120.00444 * 179.72007 * 7 6 2 10 10 C 1.46497 * 120.00197 * 180.02562 * 9 7 6 11 11 H 1.09003 * 115.51384 * 350.41219 * 10 9 7 12 12 C 1.53001 * 117.44106 * 205.00079 * 10 9 7 13 13 H 1.09002 * 119.53987 * 4.15796 * 12 10 9 14 14 C 1.54391 * 118.12276 * 159.25371 * 12 10 9 15 15 N 1.51826 * 102.86597 * 88.01620 * 14 12 10 16 16 C 1.36943 * 127.61033 * 140.54207 * 15 14 12 17 17 H 1.07994 * 119.99697 * 179.66525 * 16 15 14 18 18 C 1.38808 * 119.99940 * 359.67089 * 16 15 14 19 19 N 1.31624 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47548 * 119.99631 * 20 18 16 23 23 H 1.48507 * 109.47147 * 239.99977 * 20 18 16 24 24 C 1.48144 * 104.55308 * 320.27435 * 15 14 12 25 25 C 1.52992 * 117.40891 * 135.77194 * 10 9 7 26 26 H 1.09007 * 119.54057 * 355.89599 * 25 10 9 27 27 H 1.09001 * 109.47161 * 270.20611 * 1 2 3 28 28 H 1.09004 * 109.46644 * 30.20146 * 1 2 3 29 29 H 1.08994 * 109.46954 * 150.19902 * 1 2 3 30 30 H 1.07992 * 122.45092 * 359.97438 * 3 2 1 31 31 H 1.07994 * 124.52425 * 179.73204 * 4 3 2 32 32 H 0.97005 * 119.99799 * 0.02562 * 9 7 6 33 33 H 1.08992 * 110.40800 * 207.99366 * 14 12 10 34 34 H 1.08999 * 110.40393 * 330.42441 * 14 12 10 35 35 H 0.96995 * 119.99945 * 180.02562 * 19 18 16 36 36 H 1.09002 * 110.40706 * 281.07236 * 24 15 14 37 37 H 1.09001 * 110.41178 * 158.64223 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9562 -0.0058 5 16 3.9623 -0.7082 -0.0046 6 6 2.2582 -1.1415 0.0040 7 6 1.7284 -2.5082 0.0082 8 8 0.5256 -2.6945 0.0135 9 7 2.5730 -3.5585 0.0062 10 6 2.0434 -4.9244 0.0099 11 1 0.9699 -5.0113 0.1780 12 6 2.9381 -6.0260 0.5816 13 1 3.8979 -5.7623 1.0258 14 6 2.2699 -7.3374 1.0479 15 7 2.2455 -8.1734 -0.2192 16 6 2.4823 -9.5169 -0.3387 17 1 2.4268 -9.9909 -1.3075 18 6 2.7934 -10.2695 0.7853 19 7 2.8615 -9.6917 1.9660 20 14 3.1157 -12.1023 0.6225 21 1 2.9775 -12.5047 -0.8003 22 1 4.4911 -12.4067 1.0921 23 1 2.1339 -12.8526 1.4463 24 6 1.9023 -7.2122 -1.2929 25 6 2.6925 -5.9340 -0.9388 26 1 3.4696 -5.6018 -1.6273 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3633 -0.8917 -0.5107 30 1 1.8203 2.1334 -0.0004 31 1 4.3206 1.7489 -0.0108 32 1 3.5316 -3.4100 0.0024 33 1 2.8578 -7.8032 1.8387 34 1 1.2537 -7.1448 1.3917 35 1 3.0793 -10.2176 2.7514 36 1 0.8314 -7.0090 -1.2932 37 1 2.2173 -7.5972 -2.2628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958072055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 42.802230 kcal Electronic energy + Delta-G solvation = -20255.773501 eV Core-core repulsion = 17125.967450 eV Total energy + Delta-G solvation = -3129.806051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22599 -39.97893 -38.62697 -36.02585 -34.39438 -32.24324 -31.74594 -29.29050 -28.82527 -27.49116 -24.73708 -23.73028 -22.32443 -22.03670 -20.83407 -19.85408 -19.14725 -18.90099 -17.51358 -16.93518 -16.70370 -16.20135 -16.10110 -15.50858 -15.03311 -14.77826 -14.59830 -14.55643 -14.10160 -13.80986 -13.33166 -13.26377 -13.07461 -13.03408 -12.99129 -12.75172 -12.70307 -12.09840 -11.97915 -11.85409 -11.74942 -11.67367 -11.09351 -10.95761 -10.70290 -9.99213 -9.64280 -9.38641 -8.97127 -7.76102 -5.23609 -0.50241 0.50151 0.93676 1.37372 1.48874 1.49809 1.60165 1.86123 2.03695 2.49705 2.84734 3.32957 3.51304 3.71066 3.82189 3.88057 3.98374 4.12474 4.24189 4.34203 4.39973 4.52863 4.67507 4.74579 4.80122 4.87735 4.97095 5.00112 5.09529 5.25438 5.33694 5.39919 5.45658 5.47422 5.53732 5.76796 6.25062 6.36486 7.02141 7.04628 7.68953 8.43736 9.25728 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.003009 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.203360 B = 9303.772499 C = 9590.584719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.024 4.024 3 C -0.160 4.160 4 C -0.210 4.210 5 S 0.224 5.776 6 C -0.313 4.313 7 C 0.590 3.410 8 O -0.564 6.564 9 N -0.684 5.684 10 C 0.116 3.884 11 H 0.112 0.888 12 C -0.173 4.173 13 H 0.119 0.881 14 C 0.155 3.845 15 N -0.625 5.625 16 C -0.230 4.230 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.985 3.015 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.154 3.846 25 C -0.170 4.170 26 H 0.131 0.869 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.171 0.829 31 H 0.203 0.797 32 H 0.409 0.591 33 H 0.109 0.891 34 H -0.002 1.002 35 H 0.249 0.751 36 H 0.024 0.976 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 24.397 -4.497 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 C -0.190 4.190 4 C -0.347 4.347 5 S 0.492 5.508 6 C -0.433 4.433 7 C 0.379 3.621 8 O -0.444 6.444 9 N -0.333 5.333 10 C 0.009 3.991 11 H 0.130 0.870 12 C -0.194 4.194 13 H 0.137 0.863 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.359 4.359 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.599 5.599 20 Si 0.813 3.187 21 H -0.191 1.191 22 H -0.217 1.217 23 H -0.221 1.221 24 C 0.029 3.971 25 C -0.191 4.191 26 H 0.148 0.852 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.188 0.812 31 H 0.220 0.780 32 H 0.246 0.754 33 H 0.127 0.873 34 H 0.016 0.984 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.568 23.194 -4.419 24.049 hybrid contribution -0.877 -0.238 0.216 0.934 sum 3.691 22.956 -4.203 23.627 Atomic orbital electron populations 1.20726 0.88915 1.03785 1.03046 1.19854 0.98245 0.91046 0.94847 1.20130 0.92777 0.99892 1.06202 1.25740 1.01117 1.01909 1.05962 1.82927 1.01290 0.99127 1.67412 1.24282 0.99703 0.95953 1.23364 1.17311 0.85760 0.83737 0.75292 1.90762 1.15908 1.85909 1.51871 1.45090 1.09883 1.04004 1.74348 1.21479 0.96963 0.77969 1.02659 0.87039 1.24339 1.01288 0.96395 0.97410 0.86298 1.22298 0.96460 0.86958 0.91232 1.46431 1.81135 1.04167 1.03214 1.19537 1.38865 0.82996 0.94488 0.89715 1.25612 1.02867 1.02714 0.94996 1.69746 1.56661 1.34954 0.98546 0.84909 0.76854 0.79269 0.77658 1.19139 1.21689 1.22118 1.21200 0.95668 0.87935 0.92335 1.24331 1.03641 0.97438 0.93684 0.85156 0.90674 0.89117 0.91562 0.81175 0.77977 0.75404 0.87310 0.98377 0.94125 0.95834 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.55 71.24 0.68 -1.53 16 2 C -0.02 -0.49 5.90 -20.42 -0.12 -0.62 16 3 C -0.16 -2.27 9.97 21.08 0.21 -2.06 16 4 C -0.21 -2.45 10.92 66.81 0.73 -1.72 16 5 S 0.22 3.44 22.16 -56.49 -1.25 2.19 16 6 C -0.31 -7.40 6.45 24.08 0.16 -7.25 16 7 C 0.59 18.01 7.78 86.42 0.67 18.69 16 8 O -0.56 -21.12 13.81 -4.38 -0.06 -21.18 16 9 N -0.68 -19.50 5.56 -446.60 -2.48 -21.98 16 10 C 0.12 4.04 5.97 44.99 0.27 4.31 16 11 H 0.11 4.45 7.40 -2.39 -0.02 4.43 16 12 C -0.17 -6.73 6.96 -9.89 -0.07 -6.80 16 13 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 14 C 0.15 7.77 6.43 85.80 0.55 8.32 16 15 N -0.62 -32.78 3.46 -678.18 -2.35 -35.12 16 16 C -0.23 -12.96 10.42 84.03 0.88 -12.09 16 17 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.95 -56.28 10.12 21.65 0.22 -56.06 16 20 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 C 0.15 6.58 7.05 86.53 0.61 7.19 16 25 C -0.17 -6.06 7.06 -9.89 -0.07 -6.13 16 26 H 0.13 3.97 8.14 -2.38 -0.02 3.95 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.79 6.02 -2.39 -0.01 1.77 16 30 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.41 9.33 7.94 -92.70 -0.74 8.59 16 33 H 0.11 6.13 5.34 -2.39 -0.01 6.12 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -69.97 321.88 1.43 -68.55 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.36 Total: 19.14 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.96 Total: -3.16 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.61 Total: -113.17 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.25 Total: 2.19 kcal Total: -69.97 1.43 -68.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958072055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.347 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds