Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48504 * 109.47009 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47338 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00253 * 3 2 1 7 7 C 1.38807 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 189.09606 * 7 2 1 9 9 N 1.36938 * 119.99671 * 9.09315 * 7 2 1 10 10 C 1.48146 * 127.84154 * 15.57875 * 9 7 2 11 11 C 1.54386 * 104.61766 * 140.40982 * 10 9 7 12 12 H 1.09005 * 117.61466 * 242.76544 * 11 10 9 13 13 C 1.54151 * 104.96811 * 23.83033 * 11 10 9 14 14 H 1.08993 * 121.79184 * 222.19820 * 13 11 10 15 15 C 1.48147 * 127.83400 * 195.57032 * 9 7 2 16 16 C 1.53005 * 118.12137 * 87.19457 * 11 10 9 17 17 H 1.08992 * 117.44092 * 16.05762 * 16 11 10 18 18 N 1.46501 * 117.44310 * 160.80833 * 16 11 10 19 19 C 1.34773 * 119.99877 * 205.16658 * 18 16 11 20 20 O 1.21275 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99741 * 180.27660 * 19 18 16 22 22 C 1.50703 * 109.46734 * 179.72208 * 21 19 18 23 23 C 1.33387 * 125.19946 * 90.00015 * 22 21 19 24 24 C 1.38431 * 114.91769 * 179.97438 * 23 22 21 25 25 C 1.33391 * 114.91616 * 0.02562 * 24 23 22 26 26 S 1.75878 * 109.59726 * 359.75391 * 25 24 23 27 27 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.40553 * 21.62349 * 10 9 7 29 29 H 1.09003 * 110.40367 * 259.19452 * 10 9 7 30 30 H 1.08993 * 110.41303 * 338.37792 * 15 9 7 31 31 H 1.09001 * 110.40608 * 100.69053 * 15 9 7 32 32 H 0.97005 * 119.99770 * 25.16535 * 18 16 11 33 33 H 1.08998 * 109.46508 * 299.71885 * 21 19 18 34 34 H 1.08998 * 109.47014 * 59.71882 * 21 19 18 35 35 H 1.07995 * 122.54315 * 359.95407 * 23 22 21 36 36 H 1.07996 * 122.54005 * 179.97438 * 24 23 22 37 37 H 1.08001 * 125.19543 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2080 0.1473 9 7 1.3385 -2.3804 -0.1885 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1484 -3.6861 -2.6806 13 6 1.2856 -4.5956 -1.0943 14 1 2.0088 -5.0525 -1.7698 15 6 1.8197 -3.7545 0.0857 16 6 -0.1184 -5.1924 -0.9764 17 1 -0.5674 -5.2278 0.0161 18 7 -0.4526 -6.3116 -1.8606 19 6 -1.1061 -7.3844 -1.3722 20 8 -1.4171 -7.4234 -0.2006 21 6 -1.4444 -8.5384 -2.2804 22 6 -2.1626 -9.6037 -1.4927 23 6 -3.4842 -9.6796 -1.3291 24 6 -3.9167 -10.7488 -0.5636 25 6 -2.9462 -11.5407 -0.1050 26 16 -1.3866 -10.9408 -0.6539 27 1 -0.4850 0.8400 0.0004 28 1 -0.3433 -1.7010 -1.2925 29 1 -0.7317 -2.7500 0.1059 30 1 2.9091 -3.7785 0.1075 31 1 1.4134 -4.1182 1.0295 32 1 -0.2036 -6.2806 -2.7977 33 1 -2.0871 -8.1886 -3.0883 34 1 -0.5271 -8.9523 -2.6991 35 1 -4.1652 -8.9612 -1.7610 36 1 -4.9607 -10.9276 -0.3528 37 1 -3.0957 -12.4187 0.5059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958093237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = 60.242384 kcal Electronic energy + Delta-G solvation = -19987.375530 eV Core-core repulsion = 16858.325741 eV Total energy + Delta-G solvation = -3129.049789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93040 -38.53389 -37.62539 -34.46949 -32.86563 -32.13046 -30.22284 -27.40557 -27.14739 -25.57551 -23.61123 -21.90221 -20.58090 -20.21584 -19.40611 -19.28013 -17.41778 -17.03858 -16.83507 -16.14872 -15.65333 -15.07354 -14.72226 -14.16605 -13.68426 -13.30849 -13.20759 -12.99849 -12.78852 -12.71605 -12.53243 -12.21215 -11.82180 -11.50857 -11.47773 -11.00039 -10.89827 -10.84208 -10.40075 -10.21513 -10.15612 -9.88793 -9.74134 -9.22213 -8.80308 -8.74197 -8.57346 -8.34158 -6.87798 -5.80485 -3.14931 0.82988 1.49144 1.85691 2.57421 2.61200 3.19317 3.38122 3.43132 3.45262 4.29624 4.39236 4.46212 4.79557 4.87257 4.92661 5.13996 5.15809 5.36253 5.37792 5.41185 5.43052 5.55702 5.82546 5.89505 5.94842 6.11604 6.14738 6.22554 6.32861 6.52034 6.69395 6.79353 6.89211 7.33887 7.51864 7.55427 7.70468 8.19574 8.26365 9.10062 9.72729 10.49741 11.33890 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047633 B = 0.002635 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.681247 B =10625.362128 C =10769.870965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.179 4.179 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.102 0.898 15 C 0.155 3.845 16 C 0.096 3.904 17 H 0.131 0.869 18 N -0.698 5.698 19 C 0.514 3.486 20 O -0.525 6.525 21 C -0.071 4.071 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.216 4.216 26 S 0.107 5.893 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.399 0.601 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -21.613 -7.170 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.120 0.880 15 C 0.028 3.972 16 C -0.010 4.010 17 H 0.149 0.851 18 N -0.347 5.347 19 C 0.299 3.701 20 O -0.401 6.401 21 C -0.113 4.113 22 C -0.274 4.274 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.352 4.352 26 S 0.370 5.630 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.233 0.767 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.687 -21.849 -6.063 22.973 hybrid contribution -0.918 1.297 -0.741 1.753 sum -4.605 -20.553 -6.803 22.134 Atomic orbital electron populations 1.69898 1.05057 1.25457 1.55718 1.24910 0.95658 0.98008 1.01723 0.86096 0.78701 0.83208 0.77610 1.21513 1.21635 1.20524 1.19004 0.90836 0.82295 1.43399 0.90494 1.45178 1.13329 0.99990 1.73152 1.21069 0.86961 0.92451 0.93666 1.24628 1.02313 0.92563 1.00566 0.87912 1.24350 0.90491 1.02487 1.03043 0.87966 1.21129 0.97223 0.85835 0.92966 1.21850 0.98488 0.84941 0.95743 0.85145 1.45370 1.58473 1.18089 1.12795 1.20400 0.77796 0.83061 0.88870 1.90743 1.52358 1.79841 1.17111 1.20165 1.01870 0.91827 0.97397 1.23770 0.96822 1.00879 1.05902 1.20078 0.94535 0.99673 1.01639 1.20125 1.00484 0.95611 1.00094 1.25586 0.95364 1.05860 1.08368 1.84206 1.09425 1.20641 1.48682 0.93519 0.89047 0.95642 0.93009 0.95456 0.76746 0.86935 0.87805 0.84401 0.84350 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.86 55.49 0.60 -26.22 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 N -0.59 -15.26 3.38 -168.83 -0.57 -15.83 16 10 C 0.18 4.45 5.70 -2.41 -0.01 4.43 16 11 C -0.18 -3.34 7.05 -89.29 -0.63 -3.97 16 12 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 13 C -0.18 -3.24 7.05 -89.26 -0.63 -3.87 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.16 3.31 7.04 -2.38 -0.02 3.29 16 16 C 0.10 1.61 5.98 -67.92 -0.41 1.20 16 17 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 18 N -0.70 -8.96 5.56 -53.80 -0.30 -9.26 16 19 C 0.51 6.92 7.82 -10.98 -0.09 6.83 16 20 O -0.53 -9.50 15.60 5.56 0.09 -9.42 16 21 C -0.07 -0.65 6.20 -29.03 -0.18 -0.83 16 22 C -0.16 -1.70 5.00 -36.00 -0.18 -1.88 16 23 C -0.13 -1.36 10.05 -41.21 -0.41 -1.78 16 24 C -0.13 -1.28 10.18 -41.20 -0.42 -1.70 16 25 C -0.22 -2.04 11.23 29.04 0.33 -1.72 16 26 S 0.11 1.11 23.33 -107.50 -2.51 -1.39 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.09 2.44 6.51 -51.93 -0.34 2.10 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 3.79 8.83 -40.82 -0.36 3.43 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -33.21 328.73 -10.52 -43.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.86 Total: 3.31 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.90 Total: -6.74 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.27 Total: -51.31 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.21 -10.52 -43.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958093237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.968 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds