Wall clock time and date at job start Tue Mar 31 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48504 * 109.47009 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47338 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00253 * 3 2 1 7 7 C 1.38807 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 189.09606 * 7 2 1 9 9 N 1.36938 * 119.99671 * 9.09315 * 7 2 1 10 10 C 1.48146 * 127.84154 * 15.57875 * 9 7 2 11 11 C 1.54386 * 104.61766 * 140.40982 * 10 9 7 12 12 H 1.09005 * 117.61466 * 242.76544 * 11 10 9 13 13 C 1.54151 * 104.96811 * 23.83033 * 11 10 9 14 14 H 1.08993 * 121.79184 * 222.19820 * 13 11 10 15 15 C 1.48147 * 127.83400 * 195.57032 * 9 7 2 16 16 C 1.53005 * 118.12137 * 87.19457 * 11 10 9 17 17 H 1.08992 * 117.44092 * 16.05762 * 16 11 10 18 18 N 1.46501 * 117.44310 * 160.80833 * 16 11 10 19 19 C 1.34773 * 119.99877 * 205.16658 * 18 16 11 20 20 O 1.21275 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99741 * 180.27660 * 19 18 16 22 22 C 1.50703 * 109.46734 * 179.72208 * 21 19 18 23 23 C 1.33387 * 125.19946 * 90.00015 * 22 21 19 24 24 C 1.38431 * 114.91769 * 179.97438 * 23 22 21 25 25 C 1.33391 * 114.91616 * 0.02562 * 24 23 22 26 26 S 1.75878 * 109.59726 * 359.75391 * 25 24 23 27 27 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.09002 * 110.40553 * 21.62349 * 10 9 7 29 29 H 1.09003 * 110.40367 * 259.19452 * 10 9 7 30 30 H 1.08993 * 110.41303 * 338.37792 * 15 9 7 31 31 H 1.09001 * 110.40608 * 100.69053 * 15 9 7 32 32 H 0.97005 * 119.99770 * 25.16535 * 18 16 11 33 33 H 1.08998 * 109.46508 * 299.71885 * 21 19 18 34 34 H 1.08998 * 109.47014 * 59.71882 * 21 19 18 35 35 H 1.07995 * 122.54315 * 359.95407 * 23 22 21 36 36 H 1.07996 * 122.54005 * 179.97438 * 24 23 22 37 37 H 1.08001 * 125.19543 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2080 0.1473 9 7 1.3385 -2.3804 -0.1885 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1484 -3.6861 -2.6806 13 6 1.2856 -4.5956 -1.0943 14 1 2.0088 -5.0525 -1.7698 15 6 1.8197 -3.7545 0.0857 16 6 -0.1184 -5.1924 -0.9764 17 1 -0.5674 -5.2278 0.0161 18 7 -0.4526 -6.3116 -1.8606 19 6 -1.1061 -7.3844 -1.3722 20 8 -1.4171 -7.4234 -0.2006 21 6 -1.4444 -8.5384 -2.2804 22 6 -2.1626 -9.6037 -1.4927 23 6 -3.4842 -9.6796 -1.3291 24 6 -3.9167 -10.7488 -0.5636 25 6 -2.9462 -11.5407 -0.1050 26 16 -1.3866 -10.9408 -0.6539 27 1 -0.4850 0.8400 0.0004 28 1 -0.3433 -1.7010 -1.2925 29 1 -0.7317 -2.7500 0.1059 30 1 2.9091 -3.7785 0.1075 31 1 1.4134 -4.1182 1.0295 32 1 -0.2036 -6.2806 -2.7977 33 1 -2.0871 -8.1886 -3.0883 34 1 -0.5271 -8.9523 -2.6991 35 1 -4.1652 -8.9612 -1.7610 36 1 -4.9607 -10.9276 -0.3528 37 1 -3.0957 -12.4187 0.5059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958093237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:08 Heat of formation + Delta-G solvation = 38.941006 kcal Electronic energy + Delta-G solvation = -19988.299227 eV Core-core repulsion = 16858.325741 eV Total energy + Delta-G solvation = -3129.973486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16582 -39.92203 -38.47138 -36.06949 -34.38960 -33.16933 -31.94798 -28.93947 -28.34068 -27.36770 -24.52564 -23.42232 -21.95275 -21.59772 -20.89833 -20.12805 -18.88869 -18.29110 -18.03616 -17.37991 -16.74924 -16.44367 -16.03013 -15.62151 -15.27678 -14.82740 -14.64743 -14.03118 -13.84793 -13.72634 -13.52074 -13.35619 -13.25881 -13.19010 -12.88579 -12.71453 -12.44361 -12.13182 -12.03429 -11.87838 -11.66376 -11.64547 -11.06703 -10.85165 -10.70194 -9.69957 -9.56669 -9.33781 -8.93882 -7.92721 -5.30016 0.07477 0.76209 1.11972 1.46770 1.48699 1.55354 1.57882 1.78117 2.13652 2.48244 2.85240 3.27917 3.58027 3.63096 3.83093 3.90629 3.96383 4.13728 4.23800 4.28893 4.37751 4.51849 4.54046 4.71397 4.76130 4.84103 4.92029 4.97845 5.22560 5.27511 5.39717 5.41340 5.44438 5.54726 5.61224 5.63497 6.15474 6.54913 6.99107 7.25544 7.65892 8.44370 9.21186 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047633 B = 0.002635 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.681247 B =10625.362128 C =10769.870965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.177 4.177 12 H 0.130 0.870 13 C -0.165 4.165 14 H 0.138 0.862 15 C 0.147 3.853 16 C 0.117 3.883 17 H 0.100 0.900 18 N -0.682 5.682 19 C 0.513 3.487 20 O -0.577 6.577 21 C -0.061 4.061 22 C -0.174 4.174 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.217 4.217 26 S 0.084 5.916 27 H 0.250 0.750 28 H 0.060 0.940 29 H -0.007 1.007 30 H 0.063 0.937 31 H 0.015 0.985 32 H 0.421 0.579 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 -23.101 -9.036 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.198 4.198 12 H 0.148 0.852 13 C -0.186 4.186 14 H 0.155 0.845 15 C 0.021 3.979 16 C 0.009 3.991 17 H 0.118 0.882 18 N -0.333 5.333 19 C 0.300 3.700 20 O -0.455 6.455 21 C -0.102 4.102 22 C -0.291 4.291 23 C -0.171 4.171 24 C -0.175 4.175 25 C -0.353 4.353 26 S 0.348 5.652 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.258 0.742 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.939 -23.382 -7.974 24.879 hybrid contribution -1.197 1.687 -0.065 2.070 sum -4.137 -21.695 -8.040 23.504 Atomic orbital electron populations 1.70104 1.06609 1.25824 1.57088 1.25788 0.96520 1.01428 1.01961 0.85015 0.77661 0.78589 0.77656 1.20889 1.22182 1.19195 1.19412 0.91422 0.83476 1.42745 0.89913 1.45490 1.13783 1.01116 1.73723 1.20808 0.85969 0.93942 0.93147 1.24307 1.03774 0.91000 1.00722 0.85204 1.24256 0.91083 1.01773 1.01522 0.84470 1.21266 0.98004 0.84515 0.94075 1.21330 0.97451 0.85267 0.95036 0.88205 1.45160 1.58149 1.16654 1.13326 1.21207 0.76385 0.83633 0.88731 1.90734 1.54291 1.80842 1.19673 1.20244 1.03752 0.89469 0.96727 1.24050 0.97141 1.01433 1.06511 1.20396 0.94885 1.00115 1.01686 1.20434 1.01646 0.95462 0.99984 1.25915 0.94621 1.06488 1.08248 1.84227 1.10573 1.21197 1.49236 0.94065 0.92168 0.98940 0.91814 0.96677 0.74151 0.83626 0.84922 0.83364 0.82426 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.86 21.65 0.24 -57.27 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.16 16 3 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.66 10.35 84.03 0.87 -12.79 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 9 N -0.62 -32.34 3.38 -688.06 -2.32 -34.67 16 10 C 0.19 9.34 5.70 86.53 0.49 9.83 16 11 C -0.18 -6.41 7.05 -9.93 -0.07 -6.48 16 12 H 0.13 4.02 8.14 -2.38 -0.02 4.00 16 13 C -0.17 -5.54 7.05 -9.91 -0.07 -5.61 16 14 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 15 C 0.15 6.25 7.04 86.55 0.61 6.85 16 16 C 0.12 3.77 5.98 45.00 0.27 4.04 16 17 H 0.10 3.96 7.40 -2.39 -0.02 3.94 16 18 N -0.68 -15.54 5.56 -442.52 -2.46 -18.00 16 19 C 0.51 12.70 7.82 87.66 0.69 13.38 16 20 O -0.58 -20.59 15.60 -3.01 -0.05 -20.64 16 21 C -0.06 -0.92 6.20 29.10 0.18 -0.74 16 22 C -0.17 -3.45 5.00 24.59 0.12 -3.32 16 23 C -0.14 -2.73 10.05 21.22 0.21 -2.51 16 24 C -0.15 -2.58 10.18 21.22 0.22 -2.36 16 25 C -0.22 -3.79 11.23 66.72 0.75 -3.04 16 26 S 0.08 1.65 23.33 -56.49 -1.32 0.33 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.06 3.35 6.51 -2.39 -0.02 3.33 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.42 6.13 8.83 -92.70 -0.82 5.31 16 33 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.29 328.73 1.11 -74.18 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.27 Total: 14.43 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.73 Total: -5.89 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.55 Total: -109.94 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -75.29 1.11 -74.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958093237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.123 kcal (2) G-P(sol) polarization free energy of solvation -75.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds