Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33812 * 124.52330 * 2 1 4 4 C 1.37476 * 115.10141 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29279 * 359.97438 * 4 3 2 6 6 C 1.46581 * 125.45332 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00168 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00321 * 179.97438 * 8 6 5 10 10 H 1.08997 * 115.51365 * 350.42055 * 9 8 6 11 11 C 1.52998 * 117.44177 * 205.00113 * 9 8 6 12 12 H 1.08999 * 119.54058 * 4.11822 * 11 9 8 13 13 C 1.54386 * 118.11898 * 159.21619 * 11 9 8 14 14 N 1.48144 * 104.62046 * 87.18878 * 13 11 9 15 15 C 1.36939 * 127.83912 * 140.41062 * 14 13 11 16 16 H 1.07997 * 120.00409 * 195.57281 * 15 14 13 17 17 C 1.38812 * 119.99817 * 15.57678 * 15 14 13 18 18 N 1.31620 * 120.00380 * 9.09624 * 17 15 14 19 19 Si 1.86801 * 119.99875 * 189.09717 * 17 15 14 20 20 H 1.48501 * 109.47530 * 90.00044 * 19 17 15 21 21 H 1.48504 * 109.47082 * 210.00020 * 19 17 15 22 22 H 1.48504 * 109.47243 * 329.99663 * 19 17 15 23 23 C 1.48143 * 104.32070 * 320.41314 * 14 13 11 24 24 C 1.52996 * 117.44152 * 135.75893 * 9 8 6 25 25 H 1.08998 * 119.53984 * 355.88839 * 24 9 8 26 26 S 1.70615 * 124.51870 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46760 * 90.00318 * 1 2 3 28 28 H 1.08996 * 109.47346 * 209.99972 * 1 2 3 29 29 H 1.08996 * 109.47118 * 330.00488 * 1 2 3 30 30 H 1.08000 * 122.44739 * 0.24106 * 3 2 1 31 31 H 1.07995 * 123.35326 * 179.97438 * 4 3 2 32 32 H 0.97001 * 119.99684 * 0.02562 * 8 6 5 33 33 H 1.09004 * 110.40499 * 205.97227 * 13 11 9 34 34 H 1.09002 * 110.40869 * 328.28460 * 13 11 9 35 35 H 0.96997 * 120.00140 * 179.97438 * 18 17 15 36 36 H 1.09006 * 110.40328 * 158.36771 * 23 14 13 37 37 H 1.08998 * 110.40590 * 280.79326 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9492 -0.4492 0.0016 6 6 5.3123 -0.9884 0.0018 7 8 6.2658 -0.2322 0.0006 8 7 5.5096 -2.3217 0.0034 9 6 6.8719 -2.8606 0.0031 10 1 7.6651 -2.1316 -0.1622 11 6 7.0744 -4.2650 -0.5692 12 1 6.2301 -4.7904 -1.0154 13 6 8.4919 -4.6645 -1.0326 14 7 9.1493 -5.1907 0.1863 15 6 9.9888 -6.2676 0.2895 16 1 10.2000 -6.6969 1.2577 17 6 10.5686 -6.8074 -0.8504 18 7 10.4586 -6.1828 -2.0037 19 14 11.5049 -8.4206 -0.7476 20 1 10.5721 -9.5507 -0.9883 21 1 12.5774 -8.4367 -1.7747 22 1 12.1098 -8.5567 0.6018 23 6 8.6924 -4.2876 1.2680 24 6 7.1704 -4.0233 0.9516 25 1 6.3975 -4.3687 1.6382 26 16 2.4739 -1.4058 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.8429 2.0964 0.0038 31 1 4.3551 1.6701 0.0002 32 1 4.7496 -2.9244 0.0040 33 1 8.4373 -5.4377 -1.7990 34 1 9.0279 -3.7936 -1.4099 35 1 10.8640 -6.5598 -2.8001 36 1 8.7892 -4.7765 2.2375 37 1 9.2606 -3.3576 1.2520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958110318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = 56.337661 kcal Electronic energy + Delta-G solvation = -19963.083305 eV Core-core repulsion = 16833.864194 eV Total energy + Delta-G solvation = -3129.219111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88786 -38.54031 -37.68097 -34.49291 -32.80511 -32.19544 -30.31275 -27.62447 -27.01353 -25.57768 -23.91724 -22.41256 -20.97104 -20.49481 -19.35999 -19.15737 -18.03487 -16.87670 -16.44933 -15.94480 -15.17729 -15.02220 -14.70214 -14.22165 -14.02735 -13.63014 -13.38014 -13.25898 -12.76639 -12.66310 -12.38296 -12.25739 -12.13230 -11.52672 -11.47578 -11.20620 -10.99284 -10.83749 -10.37906 -10.23068 -10.16487 -10.01298 -9.73617 -9.23300 -8.95950 -8.86924 -8.73843 -8.33692 -6.87913 -5.80166 -3.14691 0.26571 1.17455 1.59413 2.15835 3.04880 3.13122 3.38534 3.43601 3.45743 4.32442 4.40631 4.46337 4.70384 4.80938 5.04381 5.07539 5.14410 5.28171 5.35890 5.39142 5.50122 5.56183 5.71200 5.73337 5.84139 5.89556 6.09141 6.13443 6.21090 6.50970 6.68533 6.76842 6.88412 7.34076 7.48635 7.52931 7.71085 8.16958 8.19756 9.10294 9.72985 10.49928 11.34220 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.042740 B = 0.002812 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.973177 B = 9954.040324 C =10179.348476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.198 4.198 3 C -0.156 4.156 4 C -0.053 4.053 5 C -0.263 4.263 6 C 0.591 3.409 7 O -0.527 6.527 8 N -0.693 5.693 9 C 0.093 3.907 10 H 0.135 0.865 11 C -0.179 4.179 12 H 0.102 0.898 13 C 0.185 3.815 14 N -0.593 5.593 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.158 3.842 24 C -0.185 4.185 25 H 0.107 0.893 26 S 0.198 5.802 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.395 0.605 33 H 0.092 0.908 34 H 0.027 0.973 35 H 0.255 0.745 36 H 0.051 0.949 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.223 11.449 3.655 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.318 4.318 3 C -0.186 4.186 4 C -0.086 4.086 5 C -0.383 4.383 6 C 0.377 3.623 7 O -0.405 6.405 8 N -0.341 5.341 9 C -0.012 4.012 10 H 0.152 0.848 11 C -0.200 4.200 12 H 0.120 0.880 13 C 0.059 3.941 14 N -0.316 5.316 15 C -0.355 4.355 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.031 3.969 24 C -0.206 4.206 25 H 0.125 0.875 26 S 0.465 5.535 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.229 0.771 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.646 10.243 3.513 23.314 hybrid contribution 0.151 0.446 -0.028 0.471 sum -20.495 10.688 3.485 23.376 Atomic orbital electron populations 1.20399 0.87384 1.03499 1.03123 1.24243 1.01548 0.97809 1.08167 1.19969 0.92620 0.99591 1.06445 1.20770 0.96194 0.95237 0.96401 1.24630 0.96799 0.98096 1.18773 1.16894 0.86679 0.82222 0.76467 1.90837 1.41726 1.57912 1.49985 1.45274 1.08550 1.05965 1.74329 1.21933 0.83732 0.91307 1.04243 0.84792 1.24657 1.02541 0.95764 0.97054 0.88047 1.21073 0.84351 0.97810 0.90854 1.45120 1.52871 1.30775 1.02807 1.19000 1.19120 1.03521 0.93892 0.90467 1.24910 0.99633 0.99662 0.96074 1.69894 1.48583 1.38459 0.99160 0.86094 0.79126 0.83145 0.77231 1.21513 1.21638 1.20518 1.21699 0.88435 0.93790 0.93006 1.25118 1.00177 1.01511 0.93819 0.87493 1.83009 0.94419 1.07693 1.68369 0.90352 0.91053 0.90271 0.83817 0.82839 0.77084 0.89017 0.95498 0.93502 0.93056 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.31 36.01 0.37 -0.07 16 2 C -0.20 -1.61 6.28 -35.86 -0.23 -1.84 16 3 C -0.16 -1.35 9.99 -41.41 -0.41 -1.77 16 4 C -0.05 -0.58 10.01 -40.43 -0.40 -0.99 16 5 C -0.26 -3.24 6.45 -36.79 -0.24 -3.47 16 6 C 0.59 9.19 7.78 -12.89 -0.10 9.09 16 7 O -0.53 -10.07 16.41 5.19 0.09 -9.99 16 8 N -0.69 -10.14 5.56 -55.15 -0.31 -10.45 16 9 C 0.09 1.63 5.92 -67.93 -0.40 1.23 16 10 H 0.13 2.63 7.40 -51.93 -0.38 2.24 16 11 C -0.18 -3.41 6.98 -89.22 -0.62 -4.04 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 13 C 0.19 4.48 5.70 -2.41 -0.01 4.47 16 14 N -0.59 -15.25 3.38 -166.74 -0.56 -15.82 16 15 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 18 N -0.91 -26.82 10.86 55.49 0.60 -26.22 16 19 Si 0.91 21.91 29.56 -169.99 -5.03 16.88 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.16 3.37 7.09 -0.58 0.00 3.36 16 24 C -0.18 -3.34 7.34 -87.39 -0.64 -3.98 16 25 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 26 S 0.20 1.80 22.10 -107.50 -2.38 -0.58 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.40 4.76 7.94 -40.82 -0.32 4.43 16 33 H 0.09 2.45 6.51 -51.93 -0.34 2.12 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -32.24 328.07 -10.40 -42.64 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.82 Total: 3.33 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.94 Total: -4.75 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.27 Total: -52.49 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.24 -10.40 -42.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958110318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.980 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds