Wall clock time and date at job start Tue Mar 31 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33812 * 124.52330 * 2 1 4 4 C 1.37476 * 115.10141 * 179.97438 * 3 2 1 5 5 C 1.36648 * 113.29279 * 359.97438 * 4 3 2 6 6 C 1.46581 * 125.45332 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00168 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00321 * 179.97438 * 8 6 5 10 10 H 1.08997 * 115.51365 * 350.42055 * 9 8 6 11 11 C 1.52998 * 117.44177 * 205.00113 * 9 8 6 12 12 H 1.08999 * 119.54058 * 4.11822 * 11 9 8 13 13 C 1.54386 * 118.11898 * 159.21619 * 11 9 8 14 14 N 1.48144 * 104.62046 * 87.18878 * 13 11 9 15 15 C 1.36939 * 127.83912 * 140.41062 * 14 13 11 16 16 H 1.07997 * 120.00409 * 195.57281 * 15 14 13 17 17 C 1.38812 * 119.99817 * 15.57678 * 15 14 13 18 18 N 1.31620 * 120.00380 * 9.09624 * 17 15 14 19 19 Si 1.86801 * 119.99875 * 189.09717 * 17 15 14 20 20 H 1.48501 * 109.47530 * 90.00044 * 19 17 15 21 21 H 1.48504 * 109.47082 * 210.00020 * 19 17 15 22 22 H 1.48504 * 109.47243 * 329.99663 * 19 17 15 23 23 C 1.48143 * 104.32070 * 320.41314 * 14 13 11 24 24 C 1.52996 * 117.44152 * 135.75893 * 9 8 6 25 25 H 1.08998 * 119.53984 * 355.88839 * 24 9 8 26 26 S 1.70615 * 124.51870 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46760 * 90.00318 * 1 2 3 28 28 H 1.08996 * 109.47346 * 209.99972 * 1 2 3 29 29 H 1.08996 * 109.47118 * 330.00488 * 1 2 3 30 30 H 1.08000 * 122.44739 * 0.24106 * 3 2 1 31 31 H 1.07995 * 123.35326 * 179.97438 * 4 3 2 32 32 H 0.97001 * 119.99684 * 0.02562 * 8 6 5 33 33 H 1.09004 * 110.40499 * 205.97227 * 13 11 9 34 34 H 1.09002 * 110.40869 * 328.28460 * 13 11 9 35 35 H 0.96997 * 120.00140 * 179.97438 * 18 17 15 36 36 H 1.09006 * 110.40328 * 158.36771 * 23 14 13 37 37 H 1.08998 * 110.40590 * 280.79326 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9492 -0.4492 0.0016 6 6 5.3123 -0.9884 0.0018 7 8 6.2658 -0.2322 0.0006 8 7 5.5096 -2.3217 0.0034 9 6 6.8719 -2.8606 0.0031 10 1 7.6651 -2.1316 -0.1622 11 6 7.0744 -4.2650 -0.5692 12 1 6.2301 -4.7904 -1.0154 13 6 8.4919 -4.6645 -1.0326 14 7 9.1493 -5.1907 0.1863 15 6 9.9888 -6.2676 0.2895 16 1 10.2000 -6.6969 1.2577 17 6 10.5686 -6.8074 -0.8504 18 7 10.4586 -6.1828 -2.0037 19 14 11.5049 -8.4206 -0.7476 20 1 10.5721 -9.5507 -0.9883 21 1 12.5774 -8.4367 -1.7747 22 1 12.1098 -8.5567 0.6018 23 6 8.6924 -4.2876 1.2680 24 6 7.1704 -4.0233 0.9516 25 1 6.3975 -4.3687 1.6382 26 16 2.4739 -1.4058 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.8429 2.0964 0.0038 31 1 4.3551 1.6701 0.0002 32 1 4.7496 -2.9244 0.0040 33 1 8.4373 -5.4377 -1.7990 34 1 9.0279 -3.7936 -1.4099 35 1 10.8640 -6.5598 -2.8001 36 1 8.7892 -4.7765 2.2375 37 1 9.2606 -3.3576 1.2520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958110318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:36 Heat of formation + Delta-G solvation = 36.089050 kcal Electronic energy + Delta-G solvation = -19963.961350 eV Core-core repulsion = 16833.864194 eV Total energy + Delta-G solvation = -3130.097156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19909 -39.90910 -38.63518 -36.14123 -34.43556 -33.02155 -32.08893 -28.85800 -28.51679 -27.38047 -24.74060 -23.72007 -22.37852 -22.07494 -20.94894 -20.19436 -19.00270 -18.83755 -17.70343 -16.95063 -16.70462 -16.22259 -16.16186 -15.53968 -15.04005 -14.83069 -14.80583 -14.64011 -13.97500 -13.84562 -13.42943 -13.30628 -13.24904 -12.94623 -12.89856 -12.73893 -12.69892 -12.14491 -12.00763 -11.91949 -11.89814 -11.72092 -11.31679 -10.89301 -10.73361 -9.93315 -9.59954 -9.53845 -8.94438 -7.92534 -5.29916 -0.55290 0.42714 0.86365 1.33380 1.47238 1.49197 1.58367 1.81788 2.04252 2.48133 2.82782 3.27504 3.54847 3.68219 3.78139 3.86885 3.89846 4.04086 4.26164 4.26762 4.38900 4.47788 4.69584 4.74266 4.75459 4.84226 4.96208 5.06514 5.09250 5.20032 5.23541 5.34891 5.41229 5.42058 5.48532 5.62676 6.15009 6.32186 6.98880 6.99758 7.65720 8.44235 9.21498 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.042740 B = 0.002812 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.973177 B = 9954.040324 C =10179.348476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.183 4.183 3 C -0.167 4.167 4 C -0.050 4.050 5 C -0.306 4.306 6 C 0.591 3.409 7 O -0.575 6.575 8 N -0.682 5.682 9 C 0.110 3.890 10 H 0.109 0.891 11 C -0.178 4.178 12 H 0.126 0.874 13 C 0.189 3.811 14 N -0.616 5.616 15 C -0.241 4.241 16 H 0.084 0.916 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.283 1.283 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.149 3.851 24 C -0.163 4.163 25 H 0.142 0.858 26 S 0.232 5.768 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.411 0.589 33 H 0.061 0.939 34 H -0.004 1.004 35 H 0.250 0.750 36 H 0.064 0.936 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.444 11.180 4.840 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.303 4.303 3 C -0.197 4.197 4 C -0.084 4.084 5 C -0.426 4.426 6 C 0.380 3.620 7 O -0.456 6.456 8 N -0.330 5.330 9 C 0.004 3.996 10 H 0.126 0.874 11 C -0.199 4.199 12 H 0.144 0.856 13 C 0.063 3.937 14 N -0.340 5.340 15 C -0.370 4.370 16 H 0.102 0.898 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.023 3.977 24 C -0.184 4.184 25 H 0.159 0.841 26 S 0.500 5.500 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -23.918 9.968 4.729 26.340 hybrid contribution 1.061 0.641 -0.383 1.297 sum -22.858 10.609 4.346 25.572 Atomic orbital electron populations 1.20583 0.84875 1.04898 1.04359 1.24762 1.03154 0.97127 1.05303 1.20149 0.91459 1.01125 1.06936 1.20970 0.97447 0.94754 0.95274 1.24362 0.96444 0.99301 1.22497 1.17354 0.87697 0.81859 0.75134 1.90806 1.43665 1.58892 1.52217 1.45049 1.07664 1.06195 1.74135 1.21479 0.84879 0.90081 1.03199 0.87365 1.24342 1.00158 0.97453 0.97932 0.85596 1.20800 0.87130 0.95570 0.90180 1.45408 1.53151 1.31113 1.04284 1.19409 1.19214 1.04098 0.94261 0.89805 1.25792 1.01036 1.03092 0.95764 1.70099 1.49796 1.40035 0.99687 0.85008 0.77539 0.78899 0.77432 1.20942 1.22195 1.19137 1.21830 0.90495 0.92788 0.92545 1.25040 0.98620 1.01297 0.93477 0.84079 1.82825 0.92302 1.07284 1.67574 0.89024 0.89959 0.88621 0.81372 0.83541 0.75186 0.92063 0.98560 0.94047 0.91706 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.31 71.24 0.73 0.19 16 2 C -0.18 -2.37 6.28 24.68 0.15 -2.22 16 3 C -0.17 -2.48 9.99 21.08 0.21 -2.27 16 4 C -0.05 -1.06 10.01 21.72 0.22 -0.84 16 5 C -0.31 -7.25 6.45 24.08 0.16 -7.10 16 6 C 0.59 18.37 7.78 86.42 0.67 19.04 16 7 O -0.57 -22.76 16.41 -4.35 -0.07 -22.83 16 8 N -0.68 -19.27 5.56 -446.60 -2.48 -21.75 16 9 C 0.11 3.84 5.92 44.99 0.27 4.10 16 10 H 0.11 4.43 7.40 -2.39 -0.02 4.41 16 11 C -0.18 -6.73 6.98 -9.89 -0.07 -6.80 16 12 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 13 C 0.19 9.53 5.70 86.53 0.49 10.02 16 14 N -0.62 -32.36 3.38 -681.44 -2.30 -34.67 16 15 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 16 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 17 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 18 N -0.95 -57.61 10.86 21.65 0.24 -57.37 16 19 Si 0.98 45.57 29.56 68.60 2.03 47.60 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 C 0.15 6.38 7.09 87.72 0.62 7.00 16 24 C -0.16 -5.66 7.34 -8.70 -0.06 -5.73 16 25 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 26 S 0.23 3.61 22.10 -56.49 -1.25 2.36 16 27 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.41 8.99 7.94 -92.71 -0.74 8.25 16 33 H 0.06 3.43 6.51 -2.38 -0.02 3.42 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 36 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.78 328.07 1.24 -71.55 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.36 Total: 15.60 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.72 Total: -0.48 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.55 Total: -113.79 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.25 Total: 2.36 kcal Total: -72.78 1.24 -71.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958110318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.634 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds