Wall clock time and date at job start Tue Mar 31 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99654 * 2 1 4 4 H 1.48500 * 109.47305 * 240.00433 * 3 2 1 5 5 H 1.48503 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47280 * 119.99824 * 3 2 1 7 7 C 1.38811 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99579 * 170.65890 * 7 2 1 9 9 N 1.36933 * 119.99902 * 350.66380 * 7 2 1 10 10 C 1.48150 * 127.83786 * 164.89836 * 9 7 2 11 11 C 1.54380 * 104.61833 * 140.41415 * 10 9 7 12 12 H 1.09003 * 118.18311 * 244.20405 * 11 10 9 13 13 C 1.54148 * 104.96885 * 23.83177 * 11 10 9 14 14 H 1.09000 * 121.79257 * 222.20736 * 13 11 10 15 15 C 1.51699 * 127.61689 * 345.17414 * 9 7 2 16 16 C 1.52991 * 59.75121 * 114.13753 * 13 11 10 17 17 H 1.08998 * 117.44895 * 252.37417 * 16 13 11 18 18 N 1.46504 * 117.44324 * 107.63111 * 16 13 11 19 19 C 1.34776 * 120.00369 * 154.82824 * 18 16 13 20 20 O 1.21282 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00153 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47256 * 180.02562 * 21 19 18 23 23 C 1.38420 * 122.54342 * 90.00147 * 22 21 19 24 24 C 1.33392 * 114.92186 * 179.73342 * 23 22 21 25 25 S 1.75881 * 109.59369 * 359.97438 * 24 23 22 26 26 C 1.33393 * 122.53695 * 269.71042 * 22 21 19 27 27 H 0.96994 * 120.00454 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.40698 * 21.62767 * 10 9 7 29 29 H 1.09000 * 110.41011 * 259.20285 * 10 9 7 30 30 H 1.08998 * 111.95739 * 100.90493 * 15 9 7 31 31 H 1.09000 * 110.48763 * 337.32977 * 15 9 7 32 32 H 0.96998 * 119.99957 * 334.83125 * 18 16 13 33 33 H 1.09004 * 109.47071 * 59.99837 * 21 19 18 34 34 H 1.09010 * 109.47212 * 300.00290 * 21 19 18 35 35 H 1.07994 * 122.54025 * 359.70822 * 23 22 21 36 36 H 1.07998 * 125.19987 * 180.02562 * 24 23 22 37 37 H 1.08007 * 125.19896 * 0.24777 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0796 -1.2081 -0.1524 9 7 1.3393 -2.3802 0.1913 10 6 1.8229 -3.7552 -0.0740 11 6 1.2863 -4.5917 1.1073 12 1 2.0080 -5.0450 1.7870 13 6 0.0629 -3.8101 1.6254 14 1 -0.1268 -3.6808 2.6910 15 6 -0.0706 -2.5675 0.7189 16 6 -0.1170 -5.1896 0.9890 17 1 -0.5636 -5.2303 -0.0045 18 7 -0.4530 -6.3047 1.8778 19 6 -1.1049 -7.3801 1.3931 20 8 -1.4129 -7.4250 0.2209 21 6 -1.4500 -8.5273 2.3074 22 6 -2.1701 -9.5946 1.5243 23 6 -1.5046 -10.6281 0.8879 24 6 -2.2916 -11.4909 0.2434 25 16 -3.9725 -11.0067 0.4269 26 6 -3.4977 -9.6182 1.3966 27 1 -0.4850 0.8400 0.0004 28 1 2.9126 -3.7780 -0.0920 29 1 1.4187 -4.1251 -1.0163 30 1 -0.7841 -2.7569 -0.0830 31 1 -0.3770 -1.7008 1.3047 32 1 -0.2064 -6.2689 2.8153 33 1 -2.0931 -8.1701 3.1118 34 1 -0.5353 -8.9425 2.7307 35 1 -0.4295 -10.7281 0.9112 36 1 -1.9491 -12.3551 -0.3063 37 1 -4.1772 -8.8955 1.8239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958144647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:17 Heat of formation + Delta-G solvation = 62.263270 kcal Electronic energy + Delta-G solvation = -20023.391885 eV Core-core repulsion = 16894.429728 eV Total energy + Delta-G solvation = -3128.962157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01109 -38.62023 -37.52996 -34.33719 -32.69659 -31.36225 -30.10311 -28.17085 -27.13464 -25.58175 -23.57894 -21.89260 -20.56000 -20.25142 -19.20966 -18.85940 -17.79262 -16.99469 -16.83051 -16.28007 -15.50090 -14.86698 -14.67118 -14.11603 -13.64562 -13.23786 -13.20394 -13.07820 -12.78126 -12.70490 -12.37194 -12.16622 -11.95785 -11.45953 -11.45065 -11.00684 -10.94378 -10.80872 -10.43819 -10.21376 -10.15668 -9.83803 -9.66705 -9.21141 -8.93298 -8.73758 -8.52631 -8.32656 -6.87411 -5.78357 -3.11457 0.86859 1.51973 1.82822 2.46547 2.65973 3.28616 3.40080 3.44058 3.45231 4.31345 4.47600 4.58216 4.72678 4.90751 5.04058 5.16073 5.19662 5.28477 5.35432 5.38932 5.45883 5.56509 5.79752 5.85728 5.89770 6.14491 6.19851 6.24409 6.29257 6.53291 6.69652 6.81186 6.89776 7.30762 7.51190 7.59384 7.69875 8.15424 8.31342 9.07021 9.73598 10.50491 11.36678 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047030 B = 0.002565 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.216340 B =10912.115139 C =11063.371713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.183 4.183 12 H 0.102 0.898 13 C -0.178 4.178 14 H 0.101 0.899 15 C 0.185 3.815 16 C 0.095 3.905 17 H 0.131 0.869 18 N -0.700 5.700 19 C 0.514 3.486 20 O -0.529 6.529 21 C -0.082 4.082 22 C -0.083 4.083 23 C -0.120 4.120 24 C -0.214 4.214 25 S 0.091 5.909 26 C -0.198 4.198 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -21.754 7.289 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.204 4.204 12 H 0.120 0.880 13 C -0.199 4.199 14 H 0.119 0.881 15 C 0.061 3.939 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.349 5.349 19 C 0.300 3.700 20 O -0.404 6.404 21 C -0.124 4.124 22 C -0.096 4.096 23 C -0.150 4.150 24 C -0.349 4.349 25 S 0.355 5.645 26 C -0.333 4.333 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.232 0.768 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.732 -22.109 5.871 23.845 hybrid contribution 1.970 1.462 1.045 2.667 sum -4.762 -20.647 6.915 22.289 Atomic orbital electron populations 1.69875 1.05037 1.25506 1.55937 1.24872 0.95641 0.97905 1.01973 0.86191 0.78526 0.83012 0.77972 1.21016 1.21568 1.21152 1.18968 0.90791 0.82462 1.43141 0.90583 1.46028 1.12406 0.99731 1.74119 1.21061 0.97078 0.85873 0.92863 1.24355 0.90513 1.02455 1.03092 0.87956 1.24563 1.02427 0.92532 1.00408 0.88069 1.21676 0.86431 0.92264 0.93574 1.21863 0.98472 0.85023 0.95684 0.85173 1.45407 1.58687 1.18168 1.12616 1.20481 0.77616 0.82956 0.88945 1.90734 1.52599 1.79801 1.17299 1.20375 1.01929 0.92609 0.97511 1.18320 0.92709 0.97069 1.01503 1.20019 1.01072 0.94638 0.99287 1.25514 0.95784 1.05637 1.07992 1.84192 1.07833 1.21792 1.50700 1.25419 0.98707 1.02963 1.06246 0.93518 0.93026 0.95652 0.95020 0.89036 0.76788 0.87922 0.87854 0.84349 0.81931 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.84 55.49 0.60 -26.31 16 2 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 3 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.30 10.36 -15.06 -0.16 -6.46 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.60 -15.41 3.45 -165.82 -0.57 -15.98 16 10 C 0.16 3.37 7.05 -2.41 -0.02 3.35 16 11 C -0.18 -3.24 7.05 -89.30 -0.63 -3.87 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 13 C -0.18 -3.31 6.96 -89.30 -0.62 -3.93 16 14 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 15 C 0.19 4.44 5.91 -0.37 0.00 4.44 16 16 C 0.10 1.60 5.97 -67.94 -0.41 1.19 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 18 N -0.70 -8.94 5.56 -53.81 -0.30 -9.24 16 19 C 0.51 6.87 7.82 -10.99 -0.09 6.78 16 20 O -0.53 -9.56 15.60 5.56 0.09 -9.47 16 21 C -0.08 -0.73 5.96 -29.04 -0.17 -0.90 16 22 C -0.08 -0.88 4.29 -106.25 -0.46 -1.34 16 23 C -0.12 -1.22 9.98 -41.21 -0.41 -1.64 16 24 C -0.21 -2.02 11.23 29.04 0.33 -1.69 16 25 S 0.09 0.87 23.34 -107.50 -2.51 -1.64 16 26 C -0.20 -2.05 10.98 29.04 0.32 -1.73 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16 32 H 0.40 3.79 8.83 -40.82 -0.36 3.43 16 33 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.10 0.67 8.13 -51.92 -0.42 0.25 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -33.28 328.76 -10.03 -43.31 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.86 Total: 3.54 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.41 Total: -6.09 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.27 Total: -51.53 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.28 -10.03 -43.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958144647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.569 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds