Wall clock time and date at job start Tue Mar 31 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99654 * 2 1 4 4 H 1.48500 * 109.47305 * 240.00433 * 3 2 1 5 5 H 1.48503 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47280 * 119.99824 * 3 2 1 7 7 C 1.38811 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99579 * 170.65890 * 7 2 1 9 9 N 1.36933 * 119.99902 * 350.66380 * 7 2 1 10 10 C 1.48150 * 127.83786 * 164.89836 * 9 7 2 11 11 C 1.54380 * 104.61833 * 140.41415 * 10 9 7 12 12 H 1.09003 * 118.18311 * 244.20405 * 11 10 9 13 13 C 1.54148 * 104.96885 * 23.83177 * 11 10 9 14 14 H 1.09000 * 121.79257 * 222.20736 * 13 11 10 15 15 C 1.51699 * 127.61689 * 345.17414 * 9 7 2 16 16 C 1.52991 * 59.75121 * 114.13753 * 13 11 10 17 17 H 1.08998 * 117.44895 * 252.37417 * 16 13 11 18 18 N 1.46504 * 117.44324 * 107.63111 * 16 13 11 19 19 C 1.34776 * 120.00369 * 154.82824 * 18 16 13 20 20 O 1.21282 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00153 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.47256 * 180.02562 * 21 19 18 23 23 C 1.38420 * 122.54342 * 90.00147 * 22 21 19 24 24 C 1.33392 * 114.92186 * 179.73342 * 23 22 21 25 25 S 1.75881 * 109.59369 * 359.97438 * 24 23 22 26 26 C 1.33393 * 122.53695 * 269.71042 * 22 21 19 27 27 H 0.96994 * 120.00454 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.40698 * 21.62767 * 10 9 7 29 29 H 1.09000 * 110.41011 * 259.20285 * 10 9 7 30 30 H 1.08998 * 111.95739 * 100.90493 * 15 9 7 31 31 H 1.09000 * 110.48763 * 337.32977 * 15 9 7 32 32 H 0.96998 * 119.99957 * 334.83125 * 18 16 13 33 33 H 1.09004 * 109.47071 * 59.99837 * 21 19 18 34 34 H 1.09010 * 109.47212 * 300.00290 * 21 19 18 35 35 H 1.07994 * 122.54025 * 359.70822 * 23 22 21 36 36 H 1.07998 * 125.19987 * 180.02562 * 24 23 22 37 37 H 1.08007 * 125.19896 * 0.24777 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0796 -1.2081 -0.1524 9 7 1.3393 -2.3802 0.1913 10 6 1.8229 -3.7552 -0.0740 11 6 1.2863 -4.5917 1.1073 12 1 2.0080 -5.0450 1.7870 13 6 0.0629 -3.8101 1.6254 14 1 -0.1268 -3.6808 2.6910 15 6 -0.0706 -2.5675 0.7189 16 6 -0.1170 -5.1896 0.9890 17 1 -0.5636 -5.2303 -0.0045 18 7 -0.4530 -6.3047 1.8778 19 6 -1.1049 -7.3801 1.3931 20 8 -1.4129 -7.4250 0.2209 21 6 -1.4500 -8.5273 2.3074 22 6 -2.1701 -9.5946 1.5243 23 6 -1.5046 -10.6281 0.8879 24 6 -2.2916 -11.4909 0.2434 25 16 -3.9725 -11.0067 0.4269 26 6 -3.4977 -9.6182 1.3966 27 1 -0.4850 0.8400 0.0004 28 1 2.9126 -3.7780 -0.0920 29 1 1.4187 -4.1251 -1.0163 30 1 -0.7841 -2.7569 -0.0830 31 1 -0.3770 -1.7008 1.3047 32 1 -0.2064 -6.2689 2.8153 33 1 -2.0931 -8.1701 3.1118 34 1 -0.5353 -8.9425 2.7307 35 1 -0.4295 -10.7281 0.9112 36 1 -1.9491 -12.3551 -0.3063 37 1 -4.1772 -8.8955 1.8239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958144647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:17 Heat of formation + Delta-G solvation = 40.759527 kcal Electronic energy + Delta-G solvation = -20024.324357 eV Core-core repulsion = 16894.429728 eV Total energy + Delta-G solvation = -3129.894629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16298 -39.94274 -38.49817 -35.93429 -34.32603 -32.48024 -31.60927 -29.03965 -28.88351 -27.45738 -24.50108 -23.40364 -21.95224 -21.59246 -20.79345 -19.61833 -18.85587 -18.54805 -17.98799 -17.55495 -16.73269 -16.34044 -15.85097 -15.52895 -15.20860 -14.75272 -14.61848 -13.92458 -13.88542 -13.72565 -13.54916 -13.32429 -13.21448 -13.07594 -12.87090 -12.68081 -12.54934 -12.16261 -12.05609 -11.82787 -11.66621 -11.62146 -11.01017 -10.82417 -10.69316 -9.67447 -9.66222 -9.27067 -8.93449 -7.90985 -5.26635 0.13496 0.80946 1.11009 1.46914 1.50150 1.56857 1.61540 1.66010 2.23837 2.49822 2.87788 3.30001 3.53740 3.80691 3.84495 3.94234 4.03868 4.11634 4.15256 4.38192 4.41531 4.52506 4.55896 4.66365 4.78677 4.85444 4.93877 4.98614 5.15053 5.28305 5.40755 5.44878 5.50523 5.56758 5.57169 5.64323 6.12410 6.60440 6.95427 7.31534 7.65234 8.45230 9.23455 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047030 B = 0.002565 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.216340 B =10912.115139 C =11063.371713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.150 3.850 11 C -0.165 4.165 12 H 0.138 0.862 13 C -0.177 4.177 14 H 0.128 0.872 15 C 0.186 3.814 16 C 0.117 3.883 17 H 0.100 0.900 18 N -0.684 5.684 19 C 0.514 3.486 20 O -0.581 6.581 21 C -0.070 4.070 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.219 4.219 25 S 0.087 5.913 26 C -0.214 4.214 27 H 0.250 0.750 28 H 0.063 0.937 29 H 0.014 0.986 30 H 0.002 0.998 31 H 0.061 0.939 32 H 0.420 0.580 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -23.259 9.208 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.348 5.348 10 C 0.024 3.976 11 C -0.186 4.186 12 H 0.155 0.845 13 C -0.198 4.198 14 H 0.146 0.854 15 C 0.062 3.938 16 C 0.009 3.991 17 H 0.118 0.882 18 N -0.334 5.334 19 C 0.302 3.698 20 O -0.460 6.460 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.167 4.167 24 C -0.354 4.354 25 S 0.351 5.649 26 C -0.350 4.350 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.020 0.980 31 H 0.079 0.921 32 H 0.258 0.742 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.200 0.800 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.499 -23.659 7.835 25.522 hybrid contribution 1.559 1.855 0.353 2.449 sum -3.940 -21.804 8.187 23.622 Atomic orbital electron populations 1.70083 1.06557 1.25812 1.57313 1.25742 0.96506 1.01302 1.02258 0.85110 0.77158 0.78443 0.78344 1.20249 1.22050 1.20050 1.19384 0.91399 0.83677 1.42455 0.90003 1.46360 1.12935 1.00841 1.74647 1.21201 0.97847 0.84556 0.93997 1.24258 0.91081 1.01745 1.01561 0.84453 1.24244 1.03872 0.91069 1.00575 0.85417 1.21417 0.85458 0.93773 0.93180 1.21340 0.97412 0.85336 0.94987 0.88245 1.45207 1.58369 1.16743 1.13123 1.21313 0.76156 0.83509 0.88804 1.90727 1.54559 1.80817 1.19928 1.20434 1.03874 0.90209 0.96707 1.18616 0.92938 0.97649 1.01909 1.20299 1.01943 0.94850 0.99587 1.25855 0.95527 1.06192 1.07799 1.84179 1.08342 1.21778 1.50641 1.25701 0.99227 1.03462 1.06592 0.94124 0.91859 0.96863 0.98009 0.92087 0.74213 0.84961 0.84555 0.83068 0.79988 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.84 21.65 0.23 -57.34 16 2 C -0.06 -3.69 5.41 84.86 0.46 -3.23 16 3 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.24 -13.59 10.36 84.03 0.87 -12.72 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 9 N -0.62 -32.60 3.45 -678.54 -2.34 -34.94 16 10 C 0.15 6.34 7.05 86.53 0.61 6.95 16 11 C -0.17 -5.51 7.05 -9.94 -0.07 -5.58 16 12 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 13 C -0.18 -6.37 6.96 -9.94 -0.07 -6.44 16 14 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16 15 C 0.19 9.23 5.91 85.82 0.51 9.74 16 16 C 0.12 3.75 5.97 44.99 0.27 4.02 16 17 H 0.10 3.93 7.40 -2.39 -0.02 3.91 16 18 N -0.68 -15.36 5.56 -442.55 -2.46 -17.82 16 19 C 0.51 12.48 7.82 87.66 0.69 13.17 16 20 O -0.58 -20.62 15.60 -3.04 -0.05 -20.67 16 21 C -0.07 -1.01 5.96 29.10 0.17 -0.83 16 22 C -0.10 -1.87 4.29 -20.92 -0.09 -1.96 16 23 C -0.14 -2.53 9.98 21.22 0.21 -2.32 16 24 C -0.22 -3.80 11.23 66.72 0.75 -3.05 16 25 S 0.09 1.58 23.34 -56.49 -1.32 0.26 16 26 C -0.21 -4.14 10.98 66.72 0.73 -3.41 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 3.37 6.58 -2.39 -0.02 3.35 16 32 H 0.42 6.04 8.83 -92.71 -0.82 5.22 16 33 H 0.13 1.15 8.12 -2.39 -0.02 1.13 16 34 H 0.14 1.10 8.13 -2.38 -0.02 1.08 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -75.22 328.76 1.40 -73.81 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.27 Total: 14.75 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.04 Total: -5.67 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.57 Total: -110.10 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -75.22 1.40 -73.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958144647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.571 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds