Wall clock time and date at job start Tue Mar 31 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70457 * 124.59171 * 2 1 4 4 C 1.75498 * 92.44428 * 180.08213 * 3 2 1 5 5 C 1.32775 * 110.57804 * 359.63895 * 4 3 2 6 6 C 1.36003 * 124.59342 * 179.68484 * 2 1 3 7 7 C 1.47190 * 123.45806 * 0.02562 * 6 2 1 8 8 O 1.21638 * 120.00122 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99584 * 179.97438 * 7 6 2 10 10 C 1.46506 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08999 * 115.51495 * 9.41677 * 10 9 7 12 12 C 1.53000 * 117.44438 * 224.00506 * 10 9 7 13 13 H 1.08993 * 119.53874 * 4.11745 * 12 10 9 14 14 C 1.54438 * 118.09074 * 160.74527 * 12 10 9 15 15 N 1.48143 * 104.56092 * 87.28994 * 14 12 10 16 16 C 1.36937 * 127.83632 * 140.39917 * 15 14 12 17 17 H 1.08001 * 120.00251 * 195.57404 * 16 15 14 18 18 C 1.38810 * 120.00207 * 15.57447 * 16 15 14 19 19 N 1.31618 * 120.00074 * 9.09637 * 18 16 15 20 20 Si 1.86798 * 120.00193 * 189.09938 * 18 16 15 21 21 H 1.48500 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47139 * 119.99608 * 20 18 16 23 23 H 1.48495 * 109.47448 * 240.00136 * 20 18 16 24 24 C 1.48144 * 104.32521 * 320.40073 * 15 14 12 25 25 C 1.52996 * 117.44357 * 154.83198 * 10 9 7 26 26 H 1.08994 * 119.54039 * 354.28895 * 25 10 9 27 27 H 1.08997 * 109.47025 * 270.31654 * 1 2 3 28 28 H 1.09000 * 109.47211 * 30.31282 * 1 2 3 29 29 H 1.09002 * 109.47008 * 150.31217 * 1 2 3 30 30 H 1.08004 * 124.71175 * 179.90564 * 4 3 2 31 31 H 1.08001 * 123.45902 * 180.27045 * 5 4 3 32 32 H 0.96998 * 120.00541 * 0.02562 * 9 7 6 33 33 H 1.08997 * 110.44609 * 328.51505 * 14 12 10 34 34 H 1.09006 * 110.42283 * 206.05338 * 14 12 10 35 35 H 0.97000 * 120.00084 * 179.97438 * 19 18 16 36 36 H 1.08997 * 110.40355 * 280.80131 * 24 15 14 37 37 H 1.08999 * 110.40942 * 158.36923 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 -0.0025 5 6 3.6944 -0.8314 0.0046 6 6 2.2792 -1.1196 0.0062 7 6 1.7290 -2.4848 0.0131 8 8 0.5246 -2.6552 0.0140 9 7 2.5598 -3.5460 0.0185 10 6 2.0123 -4.9049 0.0260 11 1 0.9366 -4.9785 -0.1342 12 6 2.6550 -5.9189 0.9745 13 1 3.4415 -5.5941 1.6555 14 6 1.8488 -7.1840 1.3412 15 7 2.1722 -8.1552 0.2703 16 6 2.3916 -9.5011 0.3951 17 1 2.8599 -10.0488 -0.4093 18 6 2.0120 -10.1616 1.5555 19 7 1.2842 -9.5396 2.4587 20 14 2.5342 -11.9331 1.8354 21 1 3.3411 -12.3998 0.6794 22 1 3.3489 -12.0193 3.0740 23 1 1.3284 -12.7884 1.9754 24 6 2.2044 -7.3400 -0.9663 25 6 2.8883 -6.0212 -0.5458 26 1 3.8367 -5.7702 -1.0207 27 1 -0.3633 0.0057 1.0276 28 1 -0.3634 0.8872 -0.5187 29 1 -0.3633 -0.8928 -0.5090 30 1 4.9538 0.8939 -0.0048 31 1 4.4577 -1.5954 0.0088 32 1 3.5202 -3.4102 0.0181 33 1 0.7808 -6.9665 1.3473 34 1 2.1647 -7.5685 2.3111 35 1 1.0187 -10.0012 3.2694 36 1 1.1919 -7.1469 -1.3206 37 1 2.7886 -7.8421 -1.7374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958801580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:39 Heat of formation + Delta-G solvation = 55.613231 kcal Electronic energy + Delta-G solvation = -20281.548856 eV Core-core repulsion = 17152.298332 eV Total energy + Delta-G solvation = -3129.250524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07468 -38.58716 -36.90403 -34.54151 -32.73537 -31.99403 -30.30389 -27.44559 -27.13519 -25.62421 -23.93874 -22.09700 -21.23877 -20.36956 -19.33613 -19.20258 -17.49058 -16.95763 -16.65241 -15.98345 -15.03319 -14.94952 -14.65944 -13.83466 -13.70391 -13.63691 -13.44543 -13.23111 -12.81433 -12.74714 -12.30216 -12.22748 -11.77016 -11.55944 -11.44186 -11.30056 -10.98089 -10.84688 -10.39634 -10.18004 -10.13919 -9.74517 -9.69134 -9.18470 -9.04355 -8.78568 -8.70364 -8.26744 -6.86474 -5.79281 -3.13792 0.59378 1.23924 1.64086 1.78530 3.23554 3.30668 3.38546 3.44113 3.46675 4.33854 4.43310 4.47379 4.68430 4.90882 5.07729 5.16506 5.33057 5.37534 5.40763 5.48275 5.56502 5.69853 5.72232 5.83965 5.89968 6.01511 6.04613 6.19578 6.30374 6.52797 6.68894 6.83594 6.89096 7.37032 7.54590 7.60908 7.72395 8.20847 8.30536 9.11137 9.73910 10.50911 11.35039 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.042626 B = 0.002846 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.712206 B = 9835.891557 C =10037.026912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.136 4.136 3 S 0.171 5.829 4 C -0.236 4.236 5 C -0.104 4.104 6 C -0.174 4.174 7 C 0.581 3.419 8 O -0.534 6.534 9 N -0.691 5.691 10 C 0.097 3.903 11 H 0.133 0.867 12 C -0.178 4.178 13 H 0.101 0.899 14 C 0.185 3.815 15 N -0.593 5.593 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.156 3.844 25 C -0.183 4.183 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.397 0.603 33 H 0.027 0.973 34 H 0.091 0.909 35 H 0.254 0.746 36 H 0.027 0.973 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 22.518 -5.021 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.257 4.257 3 S 0.436 5.564 4 C -0.371 4.371 5 C -0.133 4.133 6 C -0.191 4.191 7 C 0.368 3.632 8 O -0.413 6.413 9 N -0.339 5.339 10 C -0.009 4.009 11 H 0.150 0.850 12 C -0.200 4.200 13 H 0.119 0.881 14 C 0.059 3.941 15 N -0.317 5.317 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.560 5.560 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.029 3.971 25 C -0.205 4.205 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.232 0.768 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.852 23.687 -4.870 24.487 hybrid contribution 1.395 -2.302 0.258 2.704 sum 5.247 21.385 -4.612 22.497 Atomic orbital electron populations 1.20670 0.86626 1.04485 1.03744 1.24551 1.01929 0.96691 1.02493 1.83043 0.95136 1.07606 1.70646 1.25374 1.02267 0.97202 1.12268 1.21236 0.94585 0.96407 1.01102 1.20179 0.92715 0.93779 1.12407 1.17486 0.86168 0.83429 0.76158 1.90737 1.14393 1.85925 1.50225 1.45224 1.09457 1.05056 1.74171 1.21850 0.97907 0.77077 1.04075 0.84985 1.24725 1.03615 0.99066 0.92576 0.88063 1.21065 0.94602 0.83523 0.94879 1.45186 1.82069 1.03723 1.00689 1.19036 1.32620 0.81750 1.02130 0.90471 1.24911 0.98954 0.98264 0.98177 1.69910 1.39202 1.36438 1.10468 0.86038 0.77801 0.84095 0.77751 1.20374 1.21637 1.21662 1.21124 0.96720 0.88460 0.90821 1.24271 1.00834 0.96892 0.98469 0.87890 0.90078 0.91607 0.87514 0.81439 0.83461 0.76837 0.95531 0.89092 0.93567 0.95499 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.60 36.01 0.35 -0.68 16 2 C -0.14 -1.51 6.34 -35.11 -0.22 -1.74 16 3 S 0.17 1.39 22.97 -107.50 -2.47 -1.08 16 4 C -0.24 -1.86 11.12 28.86 0.32 -1.54 16 5 C -0.10 -0.97 9.91 -39.02 -0.39 -1.36 16 6 C -0.17 -2.13 5.98 -104.63 -0.63 -2.75 16 7 C 0.58 8.77 7.79 -12.63 -0.10 8.67 16 8 O -0.53 -9.71 13.62 5.24 0.07 -9.63 16 9 N -0.69 -9.75 5.54 -54.95 -0.30 -10.05 16 10 C 0.10 1.66 5.98 -67.93 -0.41 1.26 16 11 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 12 C -0.18 -3.43 7.05 -89.26 -0.63 -4.06 16 13 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 14 C 0.19 4.53 5.70 -2.38 -0.01 4.51 16 15 N -0.59 -15.30 3.38 -168.83 -0.57 -15.87 16 16 C -0.23 -6.35 10.35 -15.06 -0.16 -6.50 16 17 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 18 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 19 N -0.91 -26.94 10.86 55.49 0.60 -26.34 16 20 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.16 3.29 7.04 -2.41 -0.02 3.27 16 25 C -0.18 -3.26 7.05 -89.29 -0.63 -3.89 16 26 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.11 1.38 5.94 -51.93 -0.31 1.07 16 30 H 0.17 0.88 8.06 -52.48 -0.42 0.45 16 31 H 0.15 1.07 7.10 -52.49 -0.37 0.70 16 32 H 0.40 4.44 7.37 -40.82 -0.30 4.14 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -32.11 322.10 -10.09 -42.20 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.63 Total: 4.07 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.61 Total: -5.07 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.27 Total: -52.27 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.47 Total: -1.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.11 -10.09 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958801580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.808 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds