Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70457 * 124.59171 * 2 1 4 4 C 1.75498 * 92.44428 * 180.08213 * 3 2 1 5 5 C 1.32775 * 110.57804 * 359.63895 * 4 3 2 6 6 C 1.36003 * 124.59342 * 179.68484 * 2 1 3 7 7 C 1.47190 * 123.45806 * 0.02562 * 6 2 1 8 8 O 1.21638 * 120.00122 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99584 * 179.97438 * 7 6 2 10 10 C 1.46506 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08999 * 115.51495 * 9.41677 * 10 9 7 12 12 C 1.53000 * 117.44438 * 224.00506 * 10 9 7 13 13 H 1.08993 * 119.53874 * 4.11745 * 12 10 9 14 14 C 1.54438 * 118.09074 * 160.74527 * 12 10 9 15 15 N 1.48143 * 104.56092 * 87.28994 * 14 12 10 16 16 C 1.36937 * 127.83632 * 140.39917 * 15 14 12 17 17 H 1.08001 * 120.00251 * 195.57404 * 16 15 14 18 18 C 1.38810 * 120.00207 * 15.57447 * 16 15 14 19 19 N 1.31618 * 120.00074 * 9.09637 * 18 16 15 20 20 Si 1.86798 * 120.00193 * 189.09938 * 18 16 15 21 21 H 1.48500 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47139 * 119.99608 * 20 18 16 23 23 H 1.48495 * 109.47448 * 240.00136 * 20 18 16 24 24 C 1.48144 * 104.32521 * 320.40073 * 15 14 12 25 25 C 1.52996 * 117.44357 * 154.83198 * 10 9 7 26 26 H 1.08994 * 119.54039 * 354.28895 * 25 10 9 27 27 H 1.08997 * 109.47025 * 270.31654 * 1 2 3 28 28 H 1.09000 * 109.47211 * 30.31282 * 1 2 3 29 29 H 1.09002 * 109.47008 * 150.31217 * 1 2 3 30 30 H 1.08004 * 124.71175 * 179.90564 * 4 3 2 31 31 H 1.08001 * 123.45902 * 180.27045 * 5 4 3 32 32 H 0.96998 * 120.00541 * 0.02562 * 9 7 6 33 33 H 1.08997 * 110.44609 * 328.51505 * 14 12 10 34 34 H 1.09006 * 110.42283 * 206.05338 * 14 12 10 35 35 H 0.97000 * 120.00084 * 179.97438 * 19 18 16 36 36 H 1.08997 * 110.40355 * 280.80131 * 24 15 14 37 37 H 1.08999 * 110.40942 * 158.36923 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 -0.0025 5 6 3.6944 -0.8314 0.0046 6 6 2.2792 -1.1196 0.0062 7 6 1.7290 -2.4848 0.0131 8 8 0.5246 -2.6552 0.0140 9 7 2.5598 -3.5460 0.0185 10 6 2.0123 -4.9049 0.0260 11 1 0.9366 -4.9785 -0.1342 12 6 2.6550 -5.9189 0.9745 13 1 3.4415 -5.5941 1.6555 14 6 1.8488 -7.1840 1.3412 15 7 2.1722 -8.1552 0.2703 16 6 2.3916 -9.5011 0.3951 17 1 2.8599 -10.0488 -0.4093 18 6 2.0120 -10.1616 1.5555 19 7 1.2842 -9.5396 2.4587 20 14 2.5342 -11.9331 1.8354 21 1 3.3411 -12.3998 0.6794 22 1 3.3489 -12.0193 3.0740 23 1 1.3284 -12.7884 1.9754 24 6 2.2044 -7.3400 -0.9663 25 6 2.8883 -6.0212 -0.5458 26 1 3.8367 -5.7702 -1.0207 27 1 -0.3633 0.0057 1.0276 28 1 -0.3634 0.8872 -0.5187 29 1 -0.3633 -0.8928 -0.5090 30 1 4.9538 0.8939 -0.0048 31 1 4.4577 -1.5954 0.0088 32 1 3.5202 -3.4102 0.0181 33 1 0.7808 -6.9665 1.3473 34 1 2.1647 -7.5685 2.3111 35 1 1.0187 -10.0012 3.2694 36 1 1.1919 -7.1469 -1.3206 37 1 2.7886 -7.8421 -1.7374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958801580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = 35.243450 kcal Electronic energy + Delta-G solvation = -20282.432156 eV Core-core repulsion = 17152.298332 eV Total energy + Delta-G solvation = -3130.133824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30114 -40.04897 -37.83417 -36.14075 -34.40336 -32.84173 -32.12477 -28.95121 -28.47097 -27.38726 -24.98858 -23.36100 -22.50298 -21.93010 -20.92205 -20.32410 -18.87864 -18.26969 -17.86833 -17.15045 -16.72121 -16.13023 -15.98857 -15.46113 -14.96831 -14.67898 -14.63232 -14.51634 -14.29259 -13.78611 -13.60048 -13.36174 -13.22173 -13.03428 -12.88741 -12.74860 -12.55445 -12.13269 -12.00830 -11.97730 -11.89398 -11.66763 -10.92757 -10.82212 -10.72020 -9.87224 -9.66775 -9.34635 -8.93737 -7.92373 -5.29801 -0.20745 0.54642 0.96503 0.99484 1.46926 1.47749 1.59054 2.03073 2.22596 2.48411 2.87481 3.28341 3.57856 3.71790 3.78867 3.83916 3.90727 4.12700 4.16576 4.36250 4.40034 4.50016 4.63526 4.65517 4.77324 4.87402 4.98016 4.98870 5.07259 5.26081 5.28247 5.30616 5.41365 5.44930 5.53825 5.62921 6.15320 6.50629 6.98870 7.18446 7.66165 8.44610 9.21766 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.042626 B = 0.002846 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.712206 B = 9835.891557 C =10037.026912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.160 4.160 3 S 0.225 5.775 4 C -0.229 4.229 5 C -0.115 4.115 6 C -0.197 4.197 7 C 0.576 3.424 8 O -0.576 6.576 9 N -0.677 5.677 10 C 0.116 3.884 11 H 0.105 0.895 12 C -0.184 4.184 13 H 0.122 0.878 14 C 0.190 3.810 15 N -0.617 5.617 16 C -0.240 4.240 17 H 0.085 0.915 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.147 3.853 25 C -0.158 4.158 26 H 0.142 0.858 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.201 0.799 31 H 0.168 0.832 32 H 0.416 0.584 33 H -0.006 1.006 34 H 0.057 0.943 35 H 0.250 0.750 36 H 0.019 0.981 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 24.514 -6.083 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.281 4.281 3 S 0.491 5.509 4 C -0.364 4.364 5 C -0.143 4.143 6 C -0.214 4.214 7 C 0.365 3.635 8 O -0.457 6.457 9 N -0.327 5.327 10 C 0.009 3.991 11 H 0.123 0.877 12 C -0.205 4.205 13 H 0.140 0.860 14 C 0.064 3.936 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.811 3.189 21 H -0.186 1.186 22 H -0.217 1.217 23 H -0.220 1.220 24 C 0.022 3.978 25 C -0.179 4.179 26 H 0.160 0.840 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.218 0.782 31 H 0.186 0.814 32 H 0.254 0.746 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.672 25.722 -5.966 27.235 hybrid contribution 0.461 -2.788 0.544 2.877 sum 7.134 22.935 -5.422 24.623 Atomic orbital electron populations 1.20608 0.87106 1.04227 1.03545 1.24818 1.02410 0.98345 1.02533 1.82879 0.94195 1.05165 1.68709 1.25823 1.03611 0.96707 1.10222 1.21366 0.93339 0.97740 1.01901 1.20135 0.94515 0.92047 1.14722 1.18050 0.85713 0.84711 0.75069 1.90727 1.16270 1.86664 1.52029 1.45001 1.10404 1.03364 1.73908 1.21374 0.96730 0.78626 1.02360 0.87684 1.24396 1.03921 0.98146 0.94050 0.86042 1.20765 0.93467 0.85837 0.93539 1.45490 1.82142 1.03797 1.02662 1.19459 1.32049 0.83072 1.02309 0.89703 1.25803 0.99361 1.02564 0.98099 1.70119 1.40717 1.38043 1.10831 0.84949 0.77186 0.78920 0.77856 1.18618 1.21673 1.22007 1.21286 0.97027 0.89789 0.89704 1.24191 1.01763 0.95223 0.96678 0.84032 0.90313 0.89232 0.90409 0.78245 0.81421 0.74646 0.98851 0.92413 0.94124 0.96322 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 9.60 71.24 0.68 -1.37 16 2 C -0.16 -3.35 6.34 25.17 0.16 -3.19 16 3 S 0.22 2.94 22.97 -56.49 -1.30 1.64 16 4 C -0.23 -2.67 11.12 66.64 0.74 -1.92 16 5 C -0.12 -1.79 9.91 22.67 0.22 -1.56 16 6 C -0.20 -4.53 5.98 -19.87 -0.12 -4.65 16 7 C 0.58 17.27 7.79 86.59 0.67 17.94 16 8 O -0.58 -21.76 13.62 -4.15 -0.06 -21.82 16 9 N -0.68 -18.18 5.54 -446.01 -2.47 -20.65 16 10 C 0.12 3.97 5.98 44.99 0.27 4.24 16 11 H 0.11 4.25 7.40 -2.39 -0.02 4.23 16 12 C -0.18 -7.03 7.05 -9.92 -0.07 -7.10 16 13 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 14 C 0.19 9.70 5.70 86.55 0.49 10.20 16 15 N -0.62 -32.47 3.38 -688.06 -2.32 -34.79 16 16 C -0.24 -13.58 10.35 84.03 0.87 -12.71 16 17 H 0.09 4.54 7.84 -2.91 -0.02 4.52 16 18 C -0.06 -3.72 5.40 84.86 0.46 -3.26 16 19 N -0.95 -58.20 10.86 21.65 0.24 -57.96 16 20 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 C 0.15 6.19 7.04 86.54 0.61 6.80 16 25 C -0.16 -5.32 7.05 -9.93 -0.07 -5.39 16 26 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.13 5.94 -2.39 -0.01 2.11 16 30 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.17 1.77 7.10 -2.91 -0.02 1.75 16 32 H 0.42 8.08 7.37 -92.71 -0.68 7.39 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.06 3.30 6.51 -2.38 -0.02 3.29 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -73.37 322.10 1.45 -71.91 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.42 Total: 15.87 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.93 Total: -2.00 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.56 Total: -113.41 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Total: -73.37 1.45 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958801580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.158 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds