Wall clock time and date at job start Tue Mar 31 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32768 * 124.71836 * 2 1 4 4 C 1.44423 * 113.08758 * 179.97438 * 3 2 1 5 5 C 1.47197 * 123.45995 * 179.97438 * 4 3 2 6 6 O 1.21632 * 119.99711 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99482 * 180.02562 * 5 4 3 8 8 C 1.46508 * 119.99483 * 179.97438 * 7 5 4 9 9 H 1.08997 * 115.51915 * 350.41865 * 8 7 5 10 10 C 1.53001 * 117.44233 * 205.00040 * 8 7 5 11 11 H 1.08998 * 119.54110 * 5.71572 * 10 8 7 12 12 C 1.54382 * 118.12367 * 160.80956 * 10 8 7 13 13 N 1.48152 * 104.61740 * 87.18745 * 12 10 8 14 14 C 1.36934 * 127.83531 * 140.41188 * 13 12 10 15 15 H 1.07997 * 120.00189 * 195.57541 * 14 13 12 16 16 C 1.38821 * 120.00247 * 15.57863 * 14 13 12 17 17 N 1.31620 * 119.99557 * 9.09694 * 16 14 13 18 18 Si 1.86794 * 119.99988 * 189.09802 * 16 14 13 19 19 H 1.48494 * 109.47394 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 119.99956 * 18 16 14 21 21 H 1.48494 * 109.47238 * 239.99891 * 18 16 14 22 22 C 1.48144 * 104.32303 * 320.41998 * 13 12 10 23 23 C 1.52996 * 117.44073 * 135.76181 * 8 7 5 24 24 H 1.09001 * 119.54324 * 355.88252 * 23 8 7 25 25 C 1.36008 * 113.07933 * 0.02562 * 4 3 2 26 26 S 1.70450 * 110.81360 * 359.72433 * 25 4 3 27 27 H 1.08999 * 109.46802 * 90.00129 * 1 2 3 28 28 H 1.08993 * 109.47879 * 210.00135 * 1 2 3 29 29 H 1.09001 * 109.47086 * 330.00635 * 1 2 3 30 30 H 1.08009 * 123.45333 * 359.97438 * 3 2 1 31 31 H 0.97002 * 120.00605 * 0.02562 * 7 5 4 32 32 H 1.08996 * 110.41164 * 205.97373 * 12 10 8 33 33 H 1.09002 * 110.40571 * 328.41127 * 12 10 8 34 34 H 0.97000 * 119.99879 * 180.02562 * 17 16 14 35 35 H 1.09004 * 110.40321 * 158.36892 * 22 13 12 36 36 H 1.08997 * 110.40428 * 280.79296 * 22 13 12 37 37 H 1.07999 * 124.59184 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8001 0.0006 5 6 4.7202 1.8393 0.0002 6 8 4.4072 3.0147 -0.0012 7 7 6.0214 1.4883 0.0002 8 6 7.0590 2.5227 -0.0008 9 1 6.7068 3.5410 -0.1652 10 6 8.4271 2.1484 -0.5745 11 1 8.5646 1.1747 -1.0447 12 6 9.3733 3.2903 -1.0037 13 7 10.1149 3.6446 0.2290 14 6 11.4401 3.9682 0.3482 15 1 11.9124 3.9611 1.3194 16 6 12.1764 4.3056 -0.7792 17 7 11.5680 4.4894 -1.9318 18 14 14.0306 4.4986 -0.6605 19 1 14.4669 4.2398 0.7351 20 1 14.6886 3.5284 -1.5723 21 1 14.4104 5.8802 -1.0503 22 6 9.0975 3.5691 1.3032 23 6 8.2453 2.3322 0.9465 24 1 8.2545 1.4855 1.6328 25 6 3.9477 -0.5329 0.0005 26 16 2.5063 -1.4427 0.0073 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.8615 2.0940 -0.0004 31 1 6.2710 0.5510 0.0002 32 1 10.0613 2.9443 -1.7750 33 1 8.7994 4.1454 -1.3609 34 1 12.0825 4.7248 -2.7197 35 1 9.5776 3.4333 2.2724 36 1 8.4807 4.4677 1.3062 37 1 4.9407 -0.9573 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962064237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:41 Heat of formation + Delta-G solvation = 53.720088 kcal Electronic energy + Delta-G solvation = -19990.683940 eV Core-core repulsion = 16861.351322 eV Total energy + Delta-G solvation = -3129.332617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02284 -38.55359 -37.09289 -34.52091 -32.97993 -32.04264 -30.19993 -27.16427 -27.01234 -25.89848 -24.72061 -21.89706 -20.79043 -20.36169 -19.36866 -19.23150 -17.67228 -17.11310 -16.83468 -15.98094 -14.94451 -14.78329 -14.68503 -14.08471 -14.03400 -13.67017 -13.42275 -13.14460 -12.75680 -12.62042 -12.37032 -12.34557 -12.19747 -11.53095 -11.51077 -11.27164 -10.99135 -10.85428 -10.39370 -10.20584 -10.14099 -9.88551 -9.73980 -9.20499 -9.09725 -8.77373 -8.69437 -8.31323 -6.87286 -5.80302 -3.14524 0.50277 1.21368 1.61698 1.79795 3.10206 3.29184 3.37795 3.43645 3.46228 4.31866 4.39280 4.46509 4.71815 4.84523 4.99847 5.11293 5.16397 5.17570 5.35989 5.38078 5.49854 5.56151 5.64981 5.81106 5.82885 5.89982 6.06964 6.14700 6.22760 6.52391 6.69523 6.79676 6.89666 7.34340 7.52553 7.56043 7.71113 8.19726 8.25779 9.10354 9.73041 10.50093 11.34186 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.002663 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.711026 B =10513.655325 C =10660.447730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.204 4.204 3 C -0.089 4.089 4 C -0.143 4.143 5 C 0.577 3.423 6 O -0.533 6.533 7 N -0.691 5.691 8 C 0.096 3.904 9 H 0.133 0.867 10 C -0.179 4.179 11 H 0.103 0.897 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.155 3.845 23 C -0.182 4.182 24 H 0.102 0.898 25 C -0.216 4.216 26 S 0.180 5.820 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.254 0.746 35 H 0.052 0.948 36 H 0.028 0.972 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 -13.957 3.458 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.321 4.321 3 C -0.118 4.118 4 C -0.161 4.161 5 C 0.363 3.637 6 O -0.411 6.411 7 N -0.340 5.340 8 C -0.010 4.010 9 H 0.151 0.849 10 C -0.200 4.200 11 H 0.121 0.879 12 C 0.059 3.941 13 N -0.316 5.316 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.029 3.971 23 C -0.203 4.203 24 H 0.120 0.880 25 C -0.354 4.354 26 S 0.446 5.554 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.231 0.769 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.588 -14.553 3.340 25.433 hybrid contribution 1.623 0.959 -0.021 1.885 sum -18.966 -13.594 3.319 23.569 Atomic orbital electron populations 1.20339 0.87368 1.03324 1.02962 1.24377 1.00539 0.95981 1.11176 1.21052 0.90329 0.99834 1.00597 1.20308 0.94411 0.92378 1.08982 1.17553 0.81844 0.87941 0.76389 1.90798 1.82039 1.18595 1.49648 1.45228 1.04978 1.09574 1.74176 1.21870 0.82439 0.92838 1.03821 0.84938 1.24652 0.95634 1.02893 0.96850 0.87930 1.21071 0.91257 0.90985 0.90826 1.45186 1.05047 1.79323 1.02094 1.19041 0.82862 1.39281 0.94248 0.90455 1.24915 0.98618 1.00615 0.96212 1.69908 1.33941 1.52477 0.99779 0.86030 0.84836 0.77370 0.77417 1.20364 1.21639 1.21656 1.21121 0.90157 0.92706 0.93142 1.24373 0.99827 1.02341 0.93804 0.87964 1.25626 1.04709 0.97577 1.07482 1.82968 0.93729 1.08521 1.70216 0.90604 0.91235 0.90310 0.82846 0.76925 0.89016 0.95560 0.93569 0.92955 0.95388 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.35 36.00 0.37 -0.10 16 2 C -0.20 -1.77 6.44 -36.18 -0.23 -2.00 16 3 C -0.09 -0.99 9.95 -39.02 -0.39 -1.38 16 4 C -0.14 -1.73 5.98 -104.63 -0.63 -2.35 16 5 C 0.58 8.85 7.79 -12.62 -0.10 8.75 16 6 O -0.53 -10.21 16.36 5.25 0.09 -10.12 16 7 N -0.69 -9.81 5.53 -54.95 -0.30 -10.12 16 8 C 0.10 1.67 5.98 -67.93 -0.41 1.26 16 9 H 0.13 2.61 7.40 -51.93 -0.38 2.22 16 10 C -0.18 -3.40 7.06 -89.22 -0.63 -4.03 16 11 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 12 C 0.18 4.48 5.70 -2.41 -0.01 4.46 16 13 N -0.59 -15.32 3.38 -168.86 -0.57 -15.89 16 14 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 15 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 17 N -0.91 -26.89 10.86 55.49 0.60 -26.28 16 18 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.16 3.33 7.04 -2.41 -0.02 3.32 16 23 C -0.18 -3.29 7.06 -89.22 -0.63 -3.92 16 24 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 25 C -0.22 -2.00 10.38 29.93 0.31 -1.68 16 26 S 0.18 1.36 23.00 -107.50 -2.47 -1.11 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.40 4.40 7.32 -40.82 -0.30 4.10 16 32 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.17 1.18 7.01 -52.49 -0.37 0.82 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -32.68 327.08 -10.10 -42.78 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.74 Total: 3.31 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.61 Total: -4.42 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.27 Total: -52.29 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.68 -10.10 -42.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962064237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.500 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds