Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08988 * 117.61536 * 244.78280 * 11 10 9 13 13 C 1.52998 * 118.12194 * 87.18508 * 11 10 9 14 14 H 1.09006 * 117.44296 * 16.11524 * 13 11 10 15 15 C 1.52999 * 117.44236 * 160.80951 * 13 11 10 16 16 N 1.46500 * 109.47423 * 185.00400 * 15 13 11 17 17 C 1.34773 * 119.99987 * 180.02562 * 16 15 13 18 18 O 1.21634 * 120.00245 * 359.97438 * 17 16 15 19 19 C 1.47191 * 120.00007 * 179.97438 * 17 16 15 20 20 C 1.44422 * 123.46200 * 180.02562 * 19 17 16 21 21 C 1.32769 * 113.08472 * 180.02562 * 20 19 17 22 22 S 1.75505 * 110.57581 * 359.97438 * 21 20 19 23 23 C 1.36010 * 123.45749 * 359.71435 * 19 17 16 24 24 C 1.52998 * 60.55961 * 268.46121 * 13 11 10 25 25 H 1.08993 * 119.54115 * 248.23496 * 24 13 11 26 26 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 27 27 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 28 28 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 29 29 H 1.08993 * 110.40859 * 21.50705 * 10 9 7 30 30 H 1.09002 * 109.47165 * 305.00646 * 15 13 11 31 31 H 1.08997 * 109.46963 * 64.99944 * 15 13 11 32 32 H 0.97006 * 119.99746 * 359.97438 * 16 15 13 33 33 H 1.07997 * 123.45687 * 0.02562 * 20 19 17 34 34 H 1.07996 * 124.71432 * 180.02562 * 21 20 19 35 35 H 1.08000 * 124.59468 * 359.96852 * 23 19 17 36 36 H 1.09000 * 110.40870 * 338.36725 * 26 9 7 37 37 H 1.09000 * 110.40347 * 100.80438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5224 -4.8803 2.0196 13 6 0.2454 -5.0155 1.9367 14 1 -0.4885 -5.1162 1.1370 15 6 0.1859 -6.0902 3.0241 16 7 -1.1903 -6.5746 3.1572 17 6 -1.4839 -7.5301 4.0612 18 8 -0.6062 -7.9907 4.7662 19 6 -2.8667 -8.0164 4.1953 20 6 -3.2645 -9.0356 5.1380 21 6 -4.5608 -9.3174 5.0839 22 16 -5.3550 -8.3358 3.8649 23 6 -3.9022 -7.5476 3.4484 24 6 0.6307 -3.5985 2.3661 25 1 0.7826 -3.3798 3.4230 26 6 0.2748 -2.4294 1.4291 27 1 -0.4850 -0.8361 -0.0809 28 1 1.0942 -4.1697 -0.5284 29 1 2.8053 -3.8102 -0.1463 30 1 0.8383 -6.9197 2.7513 31 1 0.5151 -5.6659 3.9726 32 1 -1.8903 -6.2070 2.5952 33 1 -2.5779 -9.5190 5.8172 34 1 -5.0577 -10.0484 5.7044 35 1 -3.8153 -6.7814 2.6922 36 1 0.1728 -1.5052 1.9979 37 1 -0.6455 -2.6467 0.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977769192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = 51.087906 kcal Electronic energy + Delta-G solvation = -19954.441804 eV Core-core repulsion = 16824.995047 eV Total energy + Delta-G solvation = -3129.446757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08498 -38.99721 -37.04586 -35.14246 -33.61421 -31.05125 -30.09528 -27.59394 -27.17266 -25.32040 -24.38065 -21.63923 -21.22970 -20.28447 -19.46634 -19.16758 -18.39321 -17.48204 -17.20629 -15.85673 -15.40091 -15.11141 -14.51663 -14.07717 -13.81470 -13.51389 -13.43957 -13.32577 -13.25733 -13.02927 -12.74166 -12.71927 -12.02502 -11.66951 -11.45347 -10.99239 -10.73205 -10.57917 -10.50291 -10.13346 -10.06060 -9.66239 -9.58472 -9.41273 -9.22995 -9.07063 -8.73994 -8.52326 -7.03090 -6.17215 -3.22947 0.44442 1.19809 1.57352 1.73394 3.01151 3.20306 3.47083 3.51037 3.68892 3.97873 4.41148 4.52733 4.71919 4.75705 4.91689 5.05267 5.14522 5.16785 5.33004 5.41464 5.47336 5.59532 5.73195 5.77406 5.81205 5.82154 5.94107 5.95975 6.25202 6.37726 6.51703 6.56191 6.73623 6.93122 6.95712 7.36811 7.71033 8.07497 8.40961 8.93382 9.74260 10.37253 11.18816 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.002732 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.627366 B =10245.419542 C =10864.869910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.069 2.931 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.153 3.847 11 C -0.161 4.161 12 H 0.108 0.892 13 C -0.147 4.147 14 H 0.103 0.897 15 C 0.156 3.844 16 N -0.718 5.718 17 C 0.575 3.425 18 O -0.540 6.540 19 C -0.153 4.153 20 C -0.085 4.085 21 C -0.238 4.238 22 S 0.186 5.814 23 C -0.211 4.211 24 C -0.165 4.165 25 H 0.106 0.894 26 C 0.164 3.836 27 H 0.268 0.732 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.400 0.600 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.066 0.934 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -17.817 7.907 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.322 5.322 10 C 0.027 3.973 11 C -0.181 4.181 12 H 0.126 0.874 13 C -0.166 4.166 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.369 5.369 17 C 0.361 3.639 18 O -0.418 6.418 19 C -0.171 4.171 20 C -0.114 4.114 21 C -0.373 4.373 22 S 0.451 5.549 23 C -0.349 4.349 24 C -0.185 4.185 25 H 0.124 0.876 26 C 0.038 3.962 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.189 0.811 36 H 0.085 0.915 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.264 -16.209 7.884 21.255 hybrid contribution 1.398 -1.602 0.120 2.130 sum -9.866 -17.811 8.004 21.878 Atomic orbital electron populations 1.70775 1.06545 1.30207 1.48311 1.25886 0.96599 1.01265 0.98989 0.83458 0.74699 0.75736 0.76239 1.21896 1.21994 1.20976 1.19751 0.97218 0.86889 1.42013 0.91746 1.45288 1.37262 1.00189 1.49477 1.21157 0.98583 0.86046 0.91515 1.23849 0.91818 1.02528 0.99911 0.87423 1.22524 0.99746 0.94367 0.99934 0.87883 1.20879 0.81958 0.95793 0.98121 1.45877 1.11500 1.40149 1.39422 1.17588 0.87186 0.79191 0.79970 1.90792 1.48518 1.58026 1.44505 1.20354 0.93961 1.01804 1.01028 1.21152 0.95274 0.96492 0.98499 1.25533 0.98182 1.07621 1.05964 1.83115 1.08751 1.31309 1.31728 1.25743 0.98188 1.05801 1.05187 1.24049 1.04264 0.90806 0.99406 0.87616 1.21043 0.90592 0.94617 0.89912 0.92130 0.95904 0.92831 0.90924 0.91101 0.76460 0.82828 0.81281 0.81097 0.91532 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 12.82 55.49 0.71 -26.92 16 2 C -0.03 -0.74 5.12 -17.43 -0.09 -0.83 16 3 Si 1.07 25.27 29.98 -169.99 -5.10 20.17 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.38 10.19 -15.06 -0.15 -9.53 16 8 H 0.06 1.81 7.94 -52.49 -0.42 1.40 16 9 N -0.60 -15.21 3.23 -169.10 -0.55 -15.76 16 10 C 0.15 3.19 7.04 -2.41 -0.02 3.18 16 11 C -0.16 -2.77 6.85 -89.22 -0.61 -3.38 16 12 H 0.11 1.70 8.14 -51.94 -0.42 1.28 16 13 C -0.15 -2.15 5.40 -90.62 -0.49 -2.64 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 15 C 0.16 2.06 5.95 -4.04 -0.02 2.04 16 16 N -0.72 -8.55 5.52 -61.46 -0.34 -8.89 16 17 C 0.58 7.70 7.79 -12.63 -0.10 7.60 16 18 O -0.54 -9.09 16.80 5.25 0.09 -9.00 16 19 C -0.15 -1.66 5.98 -104.63 -0.63 -2.29 16 20 C -0.09 -0.82 10.10 -39.02 -0.39 -1.22 16 21 C -0.24 -1.75 11.12 28.86 0.32 -1.43 16 22 S 0.19 1.26 23.02 -107.50 -2.48 -1.21 16 23 C -0.21 -1.78 10.38 29.93 0.31 -1.46 16 24 C -0.17 -2.99 6.72 -89.43 -0.60 -3.59 16 25 H 0.11 1.83 8.12 -51.93 -0.42 1.40 16 26 C 0.16 3.76 4.98 -2.62 -0.01 3.75 16 27 H 0.27 8.05 6.41 -40.82 -0.26 7.79 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 32 H 0.40 3.86 6.90 -40.82 -0.28 3.58 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.17 1.11 7.01 -52.49 -0.37 0.74 16 36 H 0.07 1.70 7.47 -51.93 -0.39 1.31 16 37 H 0.02 0.57 7.66 -51.93 -0.40 0.17 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -33.41 326.50 -9.92 -43.33 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.70 Total: 3.17 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.48 Total: -9.81 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.17 Total: -51.57 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.10 Total: 20.17 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.48 Total: -1.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.41 -9.92 -43.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977769192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.418 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds