Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08988 * 117.61536 * 244.78280 * 11 10 9 13 13 C 1.52998 * 118.12194 * 87.18508 * 11 10 9 14 14 H 1.09006 * 117.44296 * 16.11524 * 13 11 10 15 15 C 1.52999 * 117.44236 * 160.80951 * 13 11 10 16 16 N 1.46500 * 109.47423 * 185.00400 * 15 13 11 17 17 C 1.34773 * 119.99987 * 180.02562 * 16 15 13 18 18 O 1.21634 * 120.00245 * 359.97438 * 17 16 15 19 19 C 1.47191 * 120.00007 * 179.97438 * 17 16 15 20 20 C 1.44422 * 123.46200 * 180.02562 * 19 17 16 21 21 C 1.32769 * 113.08472 * 180.02562 * 20 19 17 22 22 S 1.75505 * 110.57581 * 359.97438 * 21 20 19 23 23 C 1.36010 * 123.45749 * 359.71435 * 19 17 16 24 24 C 1.52998 * 60.55961 * 268.46121 * 13 11 10 25 25 H 1.08993 * 119.54115 * 248.23496 * 24 13 11 26 26 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 27 27 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 28 28 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 29 29 H 1.08993 * 110.40859 * 21.50705 * 10 9 7 30 30 H 1.09002 * 109.47165 * 305.00646 * 15 13 11 31 31 H 1.08997 * 109.46963 * 64.99944 * 15 13 11 32 32 H 0.97006 * 119.99746 * 359.97438 * 16 15 13 33 33 H 1.07997 * 123.45687 * 0.02562 * 20 19 17 34 34 H 1.07996 * 124.71432 * 180.02562 * 21 20 19 35 35 H 1.08000 * 124.59468 * 359.96852 * 23 19 17 36 36 H 1.09000 * 110.40870 * 338.36725 * 26 9 7 37 37 H 1.09000 * 110.40347 * 100.80438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5224 -4.8803 2.0196 13 6 0.2454 -5.0155 1.9367 14 1 -0.4885 -5.1162 1.1370 15 6 0.1859 -6.0902 3.0241 16 7 -1.1903 -6.5746 3.1572 17 6 -1.4839 -7.5301 4.0612 18 8 -0.6062 -7.9907 4.7662 19 6 -2.8667 -8.0164 4.1953 20 6 -3.2645 -9.0356 5.1380 21 6 -4.5608 -9.3174 5.0839 22 16 -5.3550 -8.3358 3.8649 23 6 -3.9022 -7.5476 3.4484 24 6 0.6307 -3.5985 2.3661 25 1 0.7826 -3.3798 3.4230 26 6 0.2748 -2.4294 1.4291 27 1 -0.4850 -0.8361 -0.0809 28 1 1.0942 -4.1697 -0.5284 29 1 2.8053 -3.8102 -0.1463 30 1 0.8383 -6.9197 2.7513 31 1 0.5151 -5.6659 3.9726 32 1 -1.8903 -6.2070 2.5952 33 1 -2.5779 -9.5190 5.8172 34 1 -5.0577 -10.0484 5.7044 35 1 -3.8153 -6.7814 2.6922 36 1 0.1728 -1.5052 1.9979 37 1 -0.6455 -2.6467 0.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977769192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = 29.769055 kcal Electronic energy + Delta-G solvation = -19955.366259 eV Core-core repulsion = 16824.995047 eV Total energy + Delta-G solvation = -3130.371212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16287 -40.42874 -37.81435 -36.54929 -35.22797 -32.75752 -30.99597 -29.25060 -28.60029 -26.77645 -25.50502 -23.05612 -22.34538 -21.69652 -21.00361 -20.10153 -19.53402 -19.09159 -18.04011 -16.97672 -16.53804 -16.42962 -15.84937 -15.66919 -15.39259 -15.15275 -14.75625 -14.47890 -14.25504 -13.94886 -13.69597 -13.59340 -13.38775 -13.35121 -12.61543 -12.52749 -12.37452 -12.17424 -12.10523 -11.90930 -11.61305 -11.21049 -10.96533 -10.72632 -10.59497 -10.22362 -9.99201 -9.36366 -9.09710 -8.39782 -5.41858 -0.23105 0.61878 0.95849 0.98378 1.56353 1.64532 1.83462 2.01695 2.29584 2.60021 2.61380 3.14415 3.48735 3.49829 3.68893 3.81372 3.90218 4.07966 4.14734 4.29488 4.30170 4.34081 4.43959 4.56899 4.64581 4.74658 4.82551 4.86985 4.99901 5.05907 5.13880 5.22428 5.25432 5.28696 5.36154 5.61519 6.25369 6.43990 6.80680 7.11120 7.62200 8.30044 8.96527 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029262 B = 0.002732 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.627366 B =10245.419542 C =10864.869910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.079 4.079 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.342 4.342 8 H 0.061 0.939 9 N -0.625 5.625 10 C 0.147 3.853 11 C -0.155 4.155 12 H 0.129 0.871 13 C -0.104 4.104 14 H 0.113 0.887 15 C 0.163 3.837 16 N -0.711 5.711 17 C 0.574 3.426 18 O -0.583 6.583 19 C -0.184 4.184 20 C -0.111 4.111 21 C -0.232 4.232 22 S 0.241 5.759 23 C -0.211 4.211 24 C -0.175 4.175 25 H 0.116 0.884 26 C 0.170 3.830 27 H 0.255 0.745 28 H 0.026 0.974 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.195 0.805 35 H 0.189 0.811 36 H 0.030 0.970 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 -19.048 8.122 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.274 4.274 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.470 4.470 8 H 0.078 0.922 9 N -0.351 5.351 10 C 0.022 3.978 11 C -0.175 4.175 12 H 0.147 0.853 13 C -0.122 4.122 14 H 0.131 0.869 15 C 0.040 3.960 16 N -0.362 5.362 17 C 0.361 3.639 18 O -0.465 6.465 19 C -0.202 4.202 20 C -0.140 4.140 21 C -0.367 4.367 22 S 0.506 5.494 23 C -0.349 4.349 24 C -0.195 4.195 25 H 0.134 0.866 26 C 0.044 3.956 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.212 0.788 35 H 0.206 0.794 36 H 0.048 0.952 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -12.164 -17.476 8.083 22.775 hybrid contribution 1.566 -1.298 0.007 2.034 sum -10.598 -18.774 8.090 23.026 Atomic orbital electron populations 1.70888 1.07498 1.29439 1.50972 1.27308 0.96719 1.04688 0.98728 0.82791 0.73777 0.71669 0.77391 1.19790 1.20682 1.21553 1.20032 0.97190 0.88344 1.41468 0.92167 1.45588 1.37743 1.01350 1.50408 1.21295 0.98582 0.84227 0.93660 1.23763 0.93816 1.02521 0.97392 0.85304 1.22416 0.98002 0.92121 0.99709 0.86916 1.20717 0.82953 0.95255 0.97104 1.45760 1.11296 1.39815 1.39369 1.17982 0.87948 0.78699 0.79234 1.90760 1.49977 1.59572 1.46217 1.20237 0.93121 1.03665 1.03186 1.21181 0.96301 0.97329 0.99197 1.25879 0.97505 1.07479 1.05859 1.83003 1.06743 1.29520 1.30092 1.26054 0.98577 1.05663 1.04637 1.23809 1.06112 0.90652 0.98898 0.86638 1.20877 0.89744 0.95000 0.89948 0.93544 0.95623 0.92735 0.90284 0.91617 0.75037 0.83710 0.78752 0.79373 0.95159 0.96696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 12.82 21.65 0.28 -58.14 16 2 C -0.08 -4.56 5.12 84.86 0.43 -4.13 16 3 Si 1.12 51.33 29.98 68.60 2.06 53.39 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.34 -19.67 10.19 84.03 0.86 -18.82 16 8 H 0.06 3.42 7.94 -2.91 -0.02 3.40 16 9 N -0.63 -32.28 3.23 -688.91 -2.22 -34.50 16 10 C 0.15 6.06 7.04 86.53 0.61 6.67 16 11 C -0.15 -5.06 6.85 -9.88 -0.07 -5.13 16 12 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 13 C -0.10 -2.82 5.40 -10.80 -0.06 -2.88 16 14 H 0.11 2.94 8.04 -2.38 -0.02 2.92 16 15 C 0.16 3.99 5.95 86.38 0.51 4.50 16 16 N -0.71 -15.72 5.52 -466.60 -2.58 -18.30 16 17 C 0.57 14.96 7.79 86.60 0.67 15.63 16 18 O -0.58 -19.72 16.80 -4.14 -0.07 -19.79 16 19 C -0.18 -3.78 5.98 -19.87 -0.12 -3.90 16 20 C -0.11 -2.07 10.10 22.67 0.23 -1.84 16 21 C -0.23 -2.88 11.12 66.64 0.74 -2.14 16 22 S 0.24 2.54 23.02 -56.49 -1.30 1.23 16 23 C -0.21 -3.06 10.38 67.30 0.70 -2.36 16 24 C -0.17 -6.17 6.72 -10.02 -0.07 -6.24 16 25 H 0.12 3.87 8.12 -2.39 -0.02 3.85 16 26 C 0.17 7.95 4.98 86.40 0.43 8.38 16 27 H 0.25 15.88 6.41 -92.71 -0.59 15.29 16 28 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 32 H 0.41 7.02 6.90 -92.70 -0.64 6.38 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.19 1.90 7.01 -2.91 -0.02 1.88 16 36 H 0.03 1.60 7.47 -2.39 -0.02 1.58 16 37 H 0.02 0.73 7.66 -2.39 -0.02 0.71 16 Total: -1.00 -74.41 326.50 1.66 -72.75 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.62 Total: 15.59 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.88 Total: -12.24 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -4.52 Total: -110.94 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.07 Total: -19.79 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.39 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.30 Total: 1.23 kcal Total: -74.41 1.66 -72.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977769192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.517 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds