Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48492 * 109.47265 * 240.00444 * 3 2 1 5 5 H 1.48497 * 109.46815 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46871 * 119.99871 * 3 2 1 7 7 C 1.38811 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99733 * 164.51844 * 7 2 1 9 9 N 1.36936 * 120.00259 * 344.52724 * 7 2 1 10 10 C 1.47008 * 121.37308 * 335.96176 * 9 7 2 11 11 C 1.50314 * 109.16516 * 222.97150 * 10 9 7 12 12 C 1.29455 * 123.65522 * 349.02341 * 11 10 9 13 13 C 1.50699 * 117.69429 * 180.85832 * 12 11 10 14 14 N 1.46501 * 109.46967 * 94.99998 * 13 12 11 15 15 C 1.34782 * 119.99692 * 179.97438 * 14 13 12 16 16 O 1.21700 * 120.00336 * 0.02562 * 15 14 13 17 17 C 1.46582 * 119.99771 * 179.97438 * 15 14 13 18 18 C 1.36644 * 125.45577 * 180.02562 * 17 15 14 19 19 C 1.37477 * 113.29467 * 179.97438 * 18 17 15 20 20 C 1.33815 * 115.10165 * 0.02562 * 19 18 17 21 21 S 1.70614 * 110.95555 * 359.97438 * 20 19 18 22 22 C 1.49967 * 124.60791 * 1.14058 * 12 11 10 23 23 C 1.47334 * 121.37793 * 155.98917 * 9 7 2 24 24 H 0.96994 * 120.00158 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52001 * 103.06034 * 10 9 7 26 26 H 1.09000 * 109.52071 * 342.87787 * 10 9 7 27 27 H 1.08006 * 118.17275 * 168.99862 * 11 10 9 28 28 H 1.09001 * 109.47291 * 334.99966 * 13 12 11 29 29 H 1.09004 * 109.47133 * 214.99552 * 13 12 11 30 30 H 0.96994 * 120.00486 * 359.97438 * 14 13 12 31 31 H 1.07995 * 123.35720 * 0.25205 * 18 17 15 32 32 H 1.08007 * 122.44963 * 180.02562 * 19 18 17 33 33 H 1.08003 * 124.52273 * 180.02562 * 20 19 18 34 34 H 1.08995 * 109.31673 * 101.01303 * 22 12 11 35 35 H 1.08999 * 109.31062 * 220.43846 * 22 12 11 36 36 H 1.08998 * 109.77801 * 237.78868 * 23 9 7 37 37 H 1.09004 * 109.78028 * 358.59543 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3153 10 6 0.1445 -2.3662 1.1378 11 6 0.2247 -3.4842 2.1393 12 6 1.1204 -4.4181 2.1018 13 6 1.0639 -5.4858 3.1638 14 7 0.3201 -6.6412 2.6556 15 6 0.1415 -7.7245 3.4373 16 8 0.5977 -7.7428 4.5654 17 6 -0.6031 -8.8803 2.9290 18 6 -0.8501 -10.0314 3.6225 19 6 -1.5738 -10.9539 2.9047 20 6 -1.9084 -10.5737 1.6662 21 16 -1.3220 -9.0073 1.3294 22 6 2.2140 -4.5089 1.0796 23 6 1.8591 -3.6720 -0.1546 24 1 -0.4850 0.8400 0.0004 25 1 -0.7265 -2.5115 0.4986 26 1 0.0586 -1.4139 1.6610 27 1 -0.5054 -3.5096 2.9348 28 1 0.5636 -5.0922 4.0486 29 1 2.0768 -5.7922 3.4253 30 1 -0.0438 -6.6265 1.7566 31 1 -0.5143 -10.1982 4.6353 32 1 -1.8520 -11.9153 3.3108 33 1 -2.4748 -11.1774 0.9725 34 1 3.1442 -4.1421 1.5132 35 1 2.3438 -5.5495 0.7822 36 1 1.0848 -4.1737 -0.7350 37 1 2.7477 -3.5292 -0.7695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000399067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = 35.804977 kcal Electronic energy + Delta-G solvation = -20204.802333 eV Core-core repulsion = 17074.692858 eV Total energy + Delta-G solvation = -3130.109475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.81465 -38.03433 -37.44124 -34.97069 -32.96126 -31.07689 -30.09690 -29.64991 -27.08987 -25.18982 -23.94558 -22.77672 -21.53509 -21.02604 -19.57265 -18.80990 -17.64409 -16.40121 -16.00237 -15.68240 -15.41133 -15.14300 -14.89447 -14.02801 -13.79953 -13.70920 -13.41154 -13.26823 -13.01257 -12.82879 -12.55207 -12.27876 -12.06608 -11.59422 -11.39524 -11.21386 -10.92670 -10.74982 -10.45063 -10.35744 -10.15440 -9.85656 -9.63321 -9.25088 -8.96958 -8.84851 -8.70828 -8.10275 -6.77812 -5.82390 -3.21359 0.28236 1.22562 1.63255 2.17347 2.52904 3.12977 3.37655 3.43412 3.44692 3.46034 4.47378 4.66219 4.76708 5.04294 5.11247 5.20925 5.32012 5.37039 5.54388 5.68203 5.78428 5.86028 5.95075 6.03776 6.05831 6.13429 6.29864 6.36611 6.48425 6.69979 6.83826 7.12799 7.21792 7.28438 7.47142 7.69598 7.78996 8.10865 8.35277 9.16677 9.79347 10.37223 11.28099 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.003076 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.195888 B = 9101.529047 C = 9402.362764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.122 4.122 12 C -0.169 4.169 13 C 0.158 3.842 14 N -0.715 5.715 15 C 0.586 3.414 16 O -0.535 6.535 17 C -0.263 4.263 18 C -0.061 4.061 19 C -0.151 4.151 20 C -0.234 4.234 21 S 0.209 5.791 22 C -0.091 4.091 23 C 0.144 3.856 24 H 0.255 0.745 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -19.695 2.952 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.143 4.143 12 C -0.170 4.170 13 C 0.036 3.964 14 N -0.366 5.366 15 C 0.371 3.629 16 O -0.414 6.414 17 C -0.384 4.384 18 C -0.094 4.094 19 C -0.182 4.182 20 C -0.372 4.372 21 S 0.476 5.524 22 C -0.130 4.130 23 C 0.017 3.983 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.234 0.766 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.186 0.814 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.820 -18.549 2.466 19.098 hybrid contribution 0.143 -0.258 0.861 0.910 sum -3.676 -18.807 3.327 19.450 Atomic orbital electron populations 1.69992 1.05173 1.25678 1.54666 1.24989 0.95404 0.98308 1.01155 0.86316 0.78824 0.83212 0.78111 1.20914 1.21617 1.21057 1.19145 0.92235 0.84348 1.41947 0.91377 1.44120 1.29214 1.01225 1.57273 1.19769 0.88838 0.94766 0.89763 1.23317 0.95714 0.96611 0.98623 1.20495 1.00138 0.97223 0.99109 1.20518 0.96153 0.84061 0.95681 1.46099 1.56514 1.16205 1.17777 1.16995 0.79355 0.81393 0.85113 1.90820 1.50421 1.81504 1.18694 1.24757 1.12350 1.01103 1.00141 1.20803 0.96500 0.90973 1.01128 1.20050 1.02174 1.01823 0.94161 1.25357 1.08022 1.01926 1.01916 1.83230 1.46777 1.10746 1.11684 1.20797 0.96581 0.99058 0.96533 1.20991 0.97373 0.87173 0.92733 0.93525 0.94018 0.88813 0.88709 0.91328 0.91251 0.76640 0.82940 0.83776 0.81398 0.91615 0.92911 0.95837 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.84 11.08 55.49 0.61 -25.22 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.10 16 3 Si 0.91 21.51 29.58 -169.99 -5.03 16.48 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -14.60 3.01 -173.57 -0.52 -15.12 16 10 C 0.19 4.49 5.23 -5.10 -0.03 4.46 16 11 C -0.12 -2.28 9.47 -35.78 -0.34 -2.62 16 12 C -0.17 -2.86 5.22 -100.99 -0.53 -3.39 16 13 C 0.16 2.39 5.66 -5.19 -0.03 2.36 16 14 N -0.72 -9.81 5.54 -62.83 -0.35 -10.16 16 15 C 0.59 8.53 7.78 -12.89 -0.10 8.43 16 16 O -0.54 -9.50 16.84 5.19 0.09 -9.41 16 17 C -0.26 -3.11 6.45 -36.79 -0.24 -3.35 16 18 C -0.06 -0.64 10.01 -40.44 -0.40 -1.04 16 19 C -0.15 -1.24 10.15 -41.41 -0.42 -1.66 16 20 C -0.23 -1.81 10.92 29.18 0.32 -1.49 16 21 S 0.21 1.89 22.16 -107.50 -2.38 -0.50 16 22 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 23 C 0.14 2.90 6.59 -3.44 -0.02 2.87 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 27 H 0.09 1.59 7.73 -52.48 -0.41 1.19 16 28 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 29 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.40 4.92 7.58 -40.82 -0.31 4.61 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -30.85 326.17 -9.65 -40.50 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.79 Total: 2.60 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.19 Total: -4.08 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.26 Total: -50.51 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.85 -9.65 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000399067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.300 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds