Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48492 * 109.47265 * 240.00444 * 3 2 1 5 5 H 1.48497 * 109.46815 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46871 * 119.99871 * 3 2 1 7 7 C 1.38811 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99733 * 164.51844 * 7 2 1 9 9 N 1.36936 * 120.00259 * 344.52724 * 7 2 1 10 10 C 1.47008 * 121.37308 * 335.96176 * 9 7 2 11 11 C 1.50314 * 109.16516 * 222.97150 * 10 9 7 12 12 C 1.29455 * 123.65522 * 349.02341 * 11 10 9 13 13 C 1.50699 * 117.69429 * 180.85832 * 12 11 10 14 14 N 1.46501 * 109.46967 * 94.99998 * 13 12 11 15 15 C 1.34782 * 119.99692 * 179.97438 * 14 13 12 16 16 O 1.21700 * 120.00336 * 0.02562 * 15 14 13 17 17 C 1.46582 * 119.99771 * 179.97438 * 15 14 13 18 18 C 1.36644 * 125.45577 * 180.02562 * 17 15 14 19 19 C 1.37477 * 113.29467 * 179.97438 * 18 17 15 20 20 C 1.33815 * 115.10165 * 0.02562 * 19 18 17 21 21 S 1.70614 * 110.95555 * 359.97438 * 20 19 18 22 22 C 1.49967 * 124.60791 * 1.14058 * 12 11 10 23 23 C 1.47334 * 121.37793 * 155.98917 * 9 7 2 24 24 H 0.96994 * 120.00158 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52001 * 103.06034 * 10 9 7 26 26 H 1.09000 * 109.52071 * 342.87787 * 10 9 7 27 27 H 1.08006 * 118.17275 * 168.99862 * 11 10 9 28 28 H 1.09001 * 109.47291 * 334.99966 * 13 12 11 29 29 H 1.09004 * 109.47133 * 214.99552 * 13 12 11 30 30 H 0.96994 * 120.00486 * 359.97438 * 14 13 12 31 31 H 1.07995 * 123.35720 * 0.25205 * 18 17 15 32 32 H 1.08007 * 122.44963 * 180.02562 * 19 18 17 33 33 H 1.08003 * 124.52273 * 180.02562 * 20 19 18 34 34 H 1.08995 * 109.31673 * 101.01303 * 22 12 11 35 35 H 1.08999 * 109.31062 * 220.43846 * 22 12 11 36 36 H 1.08998 * 109.77801 * 237.78868 * 23 9 7 37 37 H 1.09004 * 109.78028 * 358.59543 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3153 10 6 0.1445 -2.3662 1.1378 11 6 0.2247 -3.4842 2.1393 12 6 1.1204 -4.4181 2.1018 13 6 1.0639 -5.4858 3.1638 14 7 0.3201 -6.6412 2.6556 15 6 0.1415 -7.7245 3.4373 16 8 0.5977 -7.7428 4.5654 17 6 -0.6031 -8.8803 2.9290 18 6 -0.8501 -10.0314 3.6225 19 6 -1.5738 -10.9539 2.9047 20 6 -1.9084 -10.5737 1.6662 21 16 -1.3220 -9.0073 1.3294 22 6 2.2140 -4.5089 1.0796 23 6 1.8591 -3.6720 -0.1546 24 1 -0.4850 0.8400 0.0004 25 1 -0.7265 -2.5115 0.4986 26 1 0.0586 -1.4139 1.6610 27 1 -0.5054 -3.5096 2.9348 28 1 0.5636 -5.0922 4.0486 29 1 2.0768 -5.7922 3.4253 30 1 -0.0438 -6.6265 1.7566 31 1 -0.5143 -10.1982 4.6353 32 1 -1.8520 -11.9153 3.3108 33 1 -2.4748 -11.1774 0.9725 34 1 3.1442 -4.1421 1.5132 35 1 2.3438 -5.5495 0.7822 36 1 1.0848 -4.1737 -0.7350 37 1 2.7477 -3.5292 -0.7695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000399067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = 16.930212 kcal Electronic energy + Delta-G solvation = -20205.620804 eV Core-core repulsion = 17074.692858 eV Total energy + Delta-G solvation = -3130.927946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93818 -39.42121 -38.37809 -36.43739 -34.59706 -32.73852 -31.48383 -30.86165 -28.57688 -26.43939 -25.25898 -24.37238 -22.96335 -22.28392 -20.43224 -19.75249 -19.40722 -17.59150 -17.26601 -17.01818 -16.75615 -16.40018 -16.14340 -15.60573 -15.34434 -15.18114 -14.70681 -14.54610 -14.01846 -13.88429 -13.68327 -13.55962 -13.30689 -13.20576 -12.92559 -12.77409 -12.58652 -12.26203 -12.12811 -11.90842 -11.71364 -11.37744 -11.23208 -10.67991 -10.32042 -9.82557 -9.68925 -9.53383 -8.75143 -7.88216 -5.29439 -0.48954 0.49828 0.95098 1.13374 1.41926 1.47614 1.50339 1.56546 2.14129 2.30661 2.51624 3.28867 3.60020 3.74690 3.89056 3.94766 4.15574 4.36991 4.41129 4.52547 4.55097 4.62055 4.71239 4.82438 4.90242 5.03338 5.09121 5.20176 5.23207 5.24390 5.37504 5.39134 5.47366 5.61434 5.74497 6.13883 6.34005 6.37669 7.02150 7.13654 7.83557 8.37321 9.20241 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.003076 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.195888 B = 9101.529047 C = 9402.362764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.139 4.139 12 C -0.142 4.142 13 C 0.167 3.833 14 N -0.710 5.710 15 C 0.587 3.413 16 O -0.576 6.576 17 C -0.303 4.303 18 C -0.058 4.058 19 C -0.159 4.159 20 C -0.217 4.217 21 S 0.225 5.775 22 C -0.085 4.085 23 C 0.139 3.861 24 H 0.250 0.750 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.407 0.593 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.200 0.800 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -22.002 2.582 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.159 4.159 12 C -0.143 4.143 13 C 0.044 3.956 14 N -0.360 5.360 15 C 0.375 3.625 16 O -0.458 6.458 17 C -0.423 4.423 18 C -0.093 4.093 19 C -0.189 4.189 20 C -0.355 4.355 21 S 0.492 5.508 22 C -0.124 4.124 23 C 0.014 3.986 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.243 0.757 31 H 0.167 0.833 32 H 0.189 0.811 33 H 0.217 0.783 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.632 -20.885 2.066 21.299 hybrid contribution 0.074 0.313 0.911 0.966 sum -3.558 -20.572 2.977 21.089 Atomic orbital electron populations 1.70152 1.06462 1.25877 1.56039 1.25729 0.96169 1.01295 1.01607 0.85333 0.77519 0.79317 0.78240 1.20049 1.22049 1.20721 1.19483 0.92580 0.85623 1.41178 0.91188 1.44401 1.29407 1.02178 1.57944 1.19410 0.87797 0.94868 0.89938 1.22991 0.97955 0.96105 0.98898 1.20602 0.98545 0.96552 0.98613 1.20315 0.96649 0.83885 0.94724 1.45938 1.56301 1.15671 1.18127 1.17331 0.78811 0.81905 0.84498 1.90790 1.52293 1.82369 1.20361 1.24573 1.14565 1.00813 1.02336 1.21035 0.96029 0.91033 1.01184 1.20268 1.01897 1.02508 0.94219 1.25803 1.06534 1.01115 1.02078 1.83163 1.46213 1.11765 1.09622 1.20738 0.96273 1.00335 0.95017 1.21179 0.97462 0.85749 0.94254 0.94098 0.96601 0.92405 0.86932 0.91593 0.90852 0.75689 0.83325 0.81135 0.78272 0.91652 0.89524 0.95232 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.97 11.08 21.65 0.24 -54.73 16 2 C -0.05 -2.95 5.01 84.86 0.43 -2.52 16 3 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.26 -14.13 9.71 84.03 0.82 -13.31 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 N -0.62 -30.51 3.01 -703.05 -2.11 -32.62 16 10 C 0.20 9.80 5.23 85.42 0.45 10.25 16 11 C -0.14 -5.18 9.47 27.10 0.26 -4.92 16 12 C -0.14 -4.63 5.22 -15.14 -0.08 -4.71 16 13 C 0.17 4.79 5.66 85.63 0.48 5.27 16 14 N -0.71 -18.45 5.54 -470.90 -2.61 -21.06 16 15 C 0.59 16.61 7.78 86.42 0.67 17.28 16 16 O -0.58 -20.37 16.84 -4.35 -0.07 -20.45 16 17 C -0.30 -6.76 6.45 24.08 0.16 -6.61 16 18 C -0.06 -1.13 10.01 21.72 0.22 -0.91 16 19 C -0.16 -2.12 10.15 21.08 0.21 -1.91 16 20 C -0.22 -2.55 10.92 66.81 0.73 -1.82 16 21 S 0.23 3.52 22.16 -56.49 -1.25 2.27 16 22 C -0.09 -2.73 5.95 29.72 0.18 -2.55 16 23 C 0.14 5.46 6.59 86.32 0.57 6.03 16 24 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 3.15 6.41 -2.39 -0.02 3.13 16 27 H 0.11 3.76 7.73 -2.91 -0.02 3.73 16 28 H 0.07 1.97 7.78 -2.39 -0.02 1.95 16 29 H 0.07 2.10 8.11 -2.38 -0.02 2.08 16 30 H 0.41 9.29 7.58 -92.71 -0.70 8.59 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 2.31 7.96 -2.39 -0.02 2.29 16 Total: -1.00 -68.01 326.17 1.69 -66.32 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.38 Total: 13.87 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.08 Total: -0.43 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -4.48 Total: -108.42 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.07 Total: -20.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.25 Total: 2.27 kcal Total: -68.01 1.69 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000399067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.253 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds